scholarly journals Complete Genome Sequence of the Human Gut Symbiont Roseburia hominis

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Anthony J. Travis ◽  
Denise Kelly ◽  
Harry J. Flint ◽  
Rustam I. Aminov
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Potential Functions ◽  
Human Feces ◽  
Human Gut ◽  
Coding Sequences

We report here the complete genome sequence of the human gut symbiont Roseburia hominis A2-183 T (= DSM 16839 T = NCIMB 14029 T ), isolated from human feces. The genome is represented by a 3,592,125-bp chromosome with 3,405 coding sequences. A number of potential functions contributing to host-microbe interaction are identified.

scholarly journals Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces

2019 ◽  
Vol 8 (3) ◽  
Author(s):  
Yusuke Ogata ◽  
Wataru Suda ◽  
Nao Ikeyama ◽  
Masahira Hattori ◽  
Moriya Ohkuma ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Analysis ◽  
Gut Microbiome ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Human Feces ◽  
Human Gut ◽  
Content Type ◽  
Human Gut Microbiome

Phascolarctobacterium faecium is an anaerobic microbe known as a member of the human gut microbiome. Here, we report the complete genome sequence of Phascolarctobacterium faecium JCM 30894 and the elucidation of the mechanism for utilization of succinate by this bacterium based on the genome analysis.

scholarly journals Complete Genome Sequence of a Lytic Siphoviridae Bacteriophage Infecting Several Serovars of Salmonella enterica

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Rubina Paradiso ◽  
Serena Lombardi ◽  
Maria Grazia Iodice ◽  
Marita Georgia Riccardi ◽  
Massimiliano Orsini ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Salmonella Enterica ◽  
Complete Genome ◽  
Water Buffalo ◽  
Southern Italy ◽  
Lytic Activity ◽  
Coding Sequences ◽  
Double Stranded Dna

The bacteriophage 100268_sal2 was isolated from water buffalo feces in southern Italy, exhibiting lytic activity against several subspecies of Salmonella enterica . This bacteriophage belongs to the Siphoviridae family and has a 125,114-bp double-stranded DNA (ds-DNA) genome containing 188 coding sequences (CDSs).

scholarly journals Complete Genome Sequence of Lanthionine-Producing Lactobacillus brevis Strain 100D8, Generated by PacBio Sequencing

2018 ◽  
Vol 7 (14) ◽  
Author(s):  
Min-Jung Kim ◽  
Hye Sun Kim ◽  
Sam Churl Kim ◽  
Youn-Sig Kwak
Keyword(s):  
Antifungal Activity ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Lactobacillus Brevis ◽  
Pacbio Sequencing ◽  
Circular Chromosome ◽  
Coding Sequences ◽  
Content Type

Lactobacillus brevis strain 100D8 was isolated from rye silage and showed rapid acidification ability in vitro and antifungal activity against mycotoxin-producing fungi. We report here the complete genome sequence of L. brevis strain 100D8, which has a circular chromosome (2,351,988 bp, 2,304 coding sequences [CDSs]) and three plasmids (45,061 bp, 57 CDSs; 40,740 bp, 40 CDSs; and 39,943 bp, 57 CDSs).

scholarly journals Complete Genome Sequence of Bacillus velezensis Strain DKU_NT_04, Isolated from a Traditional Korean Food Made from Soybeans (Cheonggukjang)

2020 ◽  
Vol 9 (24) ◽  
Author(s):  
Man-Seok Bang ◽  
Hee-Won Jeong ◽  
Yea-Jin Lee ◽  
Sang-Cheol Lee ◽  
Gi Soo Lee ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bacillus Velezensis ◽  
Coding Sequences ◽  
Content Type ◽  
Fermented Soybean ◽  
Soybean Paste ◽  
Korean Food

ABSTRACT In the present work, we report the complete genome sequence of Bacillus velezensis DKU_NT_04, isolated from cheonggukjang, which is a traditional Korean fermented soybean paste. The final genome assembly consists of a 4.328-Mbp chromosome with 4,134 coding sequences and a G+C content of 45.21%.

scholarly journals Complete Genome Sequence of Potential Probiotic Lactobacillus sp. HFC8, Isolated from Human Gut Using PacBio SMRT Sequencing

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Madhu Kumari ◽  
Mohit Kumar Swarnkar ◽  
Sanjay Kumar ◽  
Anil Kumar Singh ◽  
Mahesh Gupta
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bacteriocin Production ◽  
Smrt Sequencing ◽  
Human Gut ◽  
Gene Coding ◽  
Probiotic Lactobacillus ◽  
Pacbio Smrt Sequencing ◽  
Production Cell

We report a 3.07-Mb complete genome sequence of a lactic acid bacterium, Lactobacillus sp. HFC8. The gene-coding clusters are predicated for probiotic characteristics, like bacteriocin production, cell adhesion, bile salt hydrolysis, lactose metabolism, autoaggregation, and tolerance to oxidative stress.

scholarly journals Complete genome sequence of a commensal bacterium, Hafnia alvei CBA7124, isolated from human feces

Gut Pathogens ◽  
2017 ◽  
Vol 9 (1) ◽  
Author(s):  
Hye Seon Song ◽  
Joon Yong Kim ◽  
Yeon Bee Kim ◽  
Myeong Seon Jeong ◽  
Jisu Kang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Human Feces ◽  
Commensal Bacterium ◽  
Hafnia Alvei

scholarly journals Complete Genome Sequence of the Marine Hydrocarbon Degrader Alcaligenes aquatilis QD168, Isolated from Crude Oil-Polluted Sediment of Quintero Bay, Central Chile

2019 ◽  
Vol 8 (5) ◽  
Author(s):  
Roberto E. Durán ◽  
Bárbara Barra-Sanhueza ◽  
Francisco Salvà-Serra ◽  
Valentina Méndez ◽  
Daniel Jaén-Luchoro ◽  
...  
Keyword(s):  
Crude Oil ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Central Chile ◽  
Coding Sequences ◽  
Content Type ◽  
Polluted Sediment ◽  
Degrading Bacterium ◽  
Hydrocarbon Degrader

Alcaligenes aquatilis strain QD168 (= CCUG 69566) is a marine hydrocarbon-degrading bacterium isolated from crude oil-polluted sediment from Quintero Bay, Central Chile. Here, we present the 4.32-Mb complete genome sequence of strain QD168, with 3,892 coding sequences, 58 tRNAs, and a 56.3% G+C content.

scholarly journals Complete Genome Sequence of Bifidobacterium longum Strain Jih1, Isolated from Human Feces

2020 ◽  
Vol 9 (22) ◽  
Author(s):  
Hikaru Inoue ◽  
Sayaka Shibata ◽  
Konosuke Ii ◽  
Joe Inoue ◽  
Shinji Fukuda ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bifidobacterium Longum ◽  
Human Feces ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT We report the complete genome sequence of Bifidobacterium longum strain Jih1, isolated from human feces. The assembled genome comprised one circular chromosome of 2.37 Mb. The chromosome harbors 1,941 protein-coding genes.

scholarly journals Complete Genome Sequence of Streptococcus salivarius HSISS4, a Human Commensal Bacterium Highly Prevalent in the Digestive Tract

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Johann Mignolet ◽  
Laetitia Fontaine ◽  
Michiel Kleerebezem ◽  
Pascal Hols
Keyword(s):  
Small Intestine ◽  
Microbial Communities ◽  
Digestive Tract ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Streptococcus Salivarius ◽  
Commensal Bacterium ◽  
Circular Chromosome ◽  
Coding Sequences

The human commensal bacterium Streptococcus salivarius plays a major role in the equilibrium of microbial communities of the digestive tract. Here, we report the first complete genome sequence of a Streptococcus salivarius strain isolated from the small intestine, namely, HSISS4. Its circular chromosome comprises 1,903 coding sequences and 2,100,988 nucleotides.

scholarly journals Complete Genome Sequence of Pseudomonas syringae pv. lapsa Strain ATCC 10859, Isolated from Infected Wheat

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Jun Kong ◽  
Hongshan Jiang ◽  
Baiyun Li ◽  
Wenjun Zhao ◽  
Zhihong Li ◽  
...  
Keyword(s):  
Pseudomonas Syringae ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Gene Clusters ◽  
Strain Atcc ◽  
Circular Chromosome ◽  
Coding Sequences

Pseudomonas syringae pv. lapsa is a pathovar of Pseudomonas syringae that can infect wheat. The complete genome of P. syringae pv. lapsa strain ATCC 10859 contains a 5,918,899-bp circular chromosome with 4,973 coding sequences, 16 rRNAs, 69 tRNAs, and an average GC content of 59.13%. The analysis of this genome revealed several gene clusters that are related to pathogenesis and virulence.

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