scholarly journals Characterization of Hydrogenase II from the Hyperthermophilic Archaeon Pyrococcus furiosus and Assessment of Its Role in Sulfur Reduction

2000 ◽  
Vol 182 (7) ◽  
pp. 1864-1871 ◽  
Author(s):  
Kesen Ma ◽  
Robert Weiss ◽  
Michael W. W. Adams
Keyword(s):  
Amino Acid ◽  
Elemental Sulfur ◽  
Pyrococcus Furiosus ◽  
Electron Paramagnetic Resonance Spectroscopy ◽  
Amino Acid Sequences ◽  
Electron Donors ◽  
Resonance Spectroscopy ◽  
Paramagnetic Resonance ◽  
Nucleotide Binding Sites ◽  
Γ Subunit

ABSTRACT The fermentative hyperthermophile Pyrococcus furiosuscontains an NADPH-utilizing, heterotetrameric (αβγδ), cytoplasmic hydrogenase (hydrogenase I) that catalyzes both H2 production and the reduction of elemental sulfur to H2S. Herein is described the purification of a second enzyme of this type, hydrogenase II, from the same organism. Hydrogenase II has an M r of 320,000 ± 20,000 and contains four different subunits withM rs of 52,000 (α), 39,000 (β), 30,000 (γ), and 24,000 (δ). The heterotetramer contained Ni (0.9 ± 0.1 atom/mol), Fe (21 ± 1.6 atoms/mol), and flavin adenine dinucleotide (FAD) (0.83 ± 0.1 mol/mol). NADPH and NADH were equally efficient as electron donors for H2 production withKm values near 70 μM andk cat/Km values near 350 min−1 mM−1. In contrast to hydrogenase I, hydrogenase II catalyzed the H2-dependent reduction of NAD (Km , 128 μM;k cat/Km , 770 min−1 mM−1). Ferredoxin from P. furiosus was not an efficient electron carrier for either enzyme. Both H2 and NADPH served as electron donors for the reduction of elemental sulfur (S0) and polysulfide by hydrogenase I and hydrogenase II, and both enzymes preferentially reduce polysulfide to sulfide rather than protons to H2using NADPH as the electron donor. At least two [4Fe-4S] and one [2Fe-2S] cluster were detected in hydrogenase II by electron paramagnetic resonance spectroscopy, but amino acid sequence analyses indicated a total of five [4Fe-4S] clusters (two in the β subunit and three in the δ subunit) and one [2Fe-2S] cluster (in the γ subunit), as well as two putative nucleotide-binding sites in the γ subunit which are thought to bind FAD and NAD(P)(H). The amino acid sequences of the four subunits of hydrogenase II showed between 55 and 63% similarity to those of hydrogenase I. The two enzymes are present in the cytoplasm at approximately the same concentration. Hydrogenase II may become physiologically relevant at low S0concentrations since it has a higher affinity than hydrogenase I for both S0 and polysulfide.

Incorporation of Vanadium and Molybdenum into Yttrium-Arsenotungstates Supported by Amino Acid Ligands

2020 ◽  
Vol 73 (3) ◽  
pp. 137
Author(s):  
Fateme Akhlaghi Bagherjeri ◽  
Chris Ritchie ◽  
Robert W. Gable ◽  
Gary Bryant ◽  
Colette Boskovic
Keyword(s):  
Amino Acid ◽  
Electron Paramagnetic Resonance Spectroscopy ◽  
Central Core ◽  
Resonance Spectroscopy ◽  
X Ray Diffraction ◽  
Paramagnetic Resonance ◽  
X Ray ◽  
Uv Visible ◽  
Visible Reflectance ◽  
Electron Paramagnetic

The preference for incorporation of molybdenum over tungsten into specific sites of a family of yttrium-arsenotungstates with amino acid ligands prompted exploration of the incorporation of other metals, affording three new vanadium-containing (V/W and V/Mo/W) analogues: K2(GlyH)10[As4(V2W2)W44Y4O160(Gly)8(H2O)12]·11Gly (1), (MBAH)9(L-NleH)3[As4(V2W2)W44Y4O160(L-Nle)8(H2O)12] (2), and (MBAH)9(L-NleH)3[As4(V2W2)Mo2W42Y4O160(L-Nle)8(H2O)12] (3) (Gly=glycine and L-Nle=l-norleucine, MBAH=4-methylbenzylammonium). These hybrid polyoxometalates all possess a tetrametallic oxo-bridged {VIV2WVI2} central core surrounded by an amino acid-ligated cyclic metal-oxo framework. X-Ray photoelectron, UV-visible reflectance, and electron paramagnetic resonance spectroscopy, together with metal analysis, confirm the incorporation of vanadium into the polyoxometalates, while single crystal X-ray diffraction analysis supports the location of the vanadium atoms in the central core.

scholarly journals Tauroursodeoxycholic Acid (TUDCA)—Lipid Interactions and Antioxidant Properties of TUDCA Studied in Model of Photoreceptor Membranes

Membranes ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 327
Author(s):  
Michał J. Sabat ◽  
Anna M. Wiśniewska-Becker ◽  
Michał Markiewicz ◽  
Katarzyna M. Marzec ◽  
Jakub Dybas ◽  
...  
Keyword(s):  
Antioxidant Activity ◽  
Plasma Membranes ◽  
Electron Paramagnetic Resonance Spectroscopy ◽  
Protective Action ◽  
Antioxidant Properties ◽  
Model Membranes ◽  
Dynamics Simulation ◽  
Resonance Spectroscopy ◽  
Paramagnetic Resonance ◽  
Tauroursodeoxycholic Acid

Tauroursodeoxycholic acid (TUDCA), a hydrophilic bile acid containing taurine conjugated with the ursodeoxycholic acid (UDCA), has been known and used from ancient times as a therapeutic compound in traditional Chinese medicine. TUDCA has recently been gaining significant interest as a neuroprotective agent, also exploited in the visual disorders. Among several mechanisms of TUDCA’s protective action, its antioxidant activity and stabilizing effect on mitochondrial and plasma membranes are considered. In this work we investigated antioxidant activity of TUDCA and its impact on structural properties of model membranes of different composition using electron paramagnetic resonance spectroscopy and the spin labeling technique. Localization of TUDCA molecules in a pure POPC bilayer has been studied using a molecular dynamics simulation (MD). The obtained results indicate that TUDCA is not an efficient singlet oxygen (1O2 (1Δg)) quencher, and the determined rate constant of its interaction with 1O2 (1Δg) is only 1.9 × 105 M−1s−1. However, in lipid oxidation process induced by a Fenton reaction, TUDCA reveals substantial antioxidant activity significantly decreasing the rate of oxygen consumption in the system studied. In addition, TUDCA induces slight, but noticeable changes in the polarity and fluidity of the investigated model membranes. The results of performed MD simulation correspond very well with the experimental results.

scholarly journals Ambient base-free glycerol oxidation over bimetallic PdFe/SiO2 by in situ generated active oxygen species

2021 ◽  
Author(s):  
Ricci Underhill ◽  
Mark Douthwaite ◽  
Richard J. Lewis ◽  
Peter J. Miedziak ◽  
Robert D. Armstrong ◽  
...  
Keyword(s):  
Heterogeneous Catalysts ◽  
Bimetallic Catalyst ◽  
Electron Paramagnetic Resonance Spectroscopy ◽  
Active Oxygen Species ◽  
Catalytic Performance ◽  
Resonance Spectroscopy ◽  
Oxygen Species ◽  
Paramagnetic Resonance ◽  
Temperature Oxidation

AbstractLow temperature oxidation of alcohols over heterogeneous catalysts is exceptionally challenging, particularly under neutral conditions. Herein, we report on an efficient, base-free method to oxidise glycerol over a 0.5%Pd-0.5%Fe/SiO2 catalyst at ambient temperature in the presence of gaseous H2 and O2. The exceptional catalytic performance was attributed to the in situ formation of highly reactive surface-bound oxygenated species, which promote the dehydrogenation on the alcohol. The PdFe bimetallic catalyst was determined to be significantly more active than corresponding monometallic analogues, highlighting the important role both metals have in this oxidative transformation. Fe leaching was confirmed to occur over the course of the reaction but sequestering experiments, involving the addition of bare carbon to the reactions, confirmed that the reaction was predominantly heterogeneous in nature. Investigations with electron paramagnetic resonance spectroscopy suggested that the reactivity in the early stages was mediated by surface-bound reactive oxygen species; no homogeneous radical species were observed in solution. This theory was further evidenced by a direct H2O2 synthesis study, which confirmed that the presence of Fe in the bimetallic catalyst neither improved the synthesis of H2O2 nor promoted its decomposition over the PdFe/SiO2 catalyst.

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