scholarly journals Two Metagenome-Assembled Genomes of Hydrogen-Dependent Methanomassiliicoccales Methanogens from the Zoige Wetland of the Tibetan Plateau

2021 ◽  
Vol 10 (17) ◽  
Author(s):  
Juanli Yun ◽  
Wenbin Du

Wetlands in the Tibetan Plateau play a crucial role in global carbon cycling. Here, we report the metagenome-assembled genomes (MAGs) of two hydrogen-dependent methanogens from the Zoige wetland of the Tibetan Plateau. The novel species belong to Methanomassiliicoccales , the seventh euryarchaeal methanogenic order.

2020 ◽  
Vol 20 (10) ◽  
pp. 6159-6175 ◽  
Author(s):  
Rui Li ◽  
Yilong Zhao ◽  
Wenhui Zhou ◽  
Ya Meng ◽  
Ziyu Zhang ◽  
...  

Abstract. We developed a two-stage model called the random-forest–generalised additive model (RF–GAM), based on satellite data, meteorological factors, and other geographical covariates, to predict the surface 8 h O3 concentrations across the remote Tibetan Plateau. The 10-fold cross-validation result suggested that RF–GAM showed excellent performance, with the highest R2 value (0.76) and lowest root-mean-square error (RMSE) (14.41 µg m−3), compared with other seven machine-learning models. The predictive performance of RF–GAM showed significant seasonal discrepancy, with the highest R2 value observed in summer (0.74), followed by winter (0.69) and autumn (0.67), and the lowest one in spring (0.64). Additionally, the unlearning ground-observed O3 data collected from open-access websites were applied to test the transferring ability of the novel model and confirmed that the model was robust in predicting the surface 8 h O3 concentration during other periods (R2=0.67, RMSE = 25.68 µg m−3). RF–GAM was then used to predict the daily 8 h O3 level over the Tibetan Plateau during 2005–2018 for the first time. It was found that the estimated O3 concentration displayed a slow increase, from 64.74±8.30 µg m−3 to 66.45±8.67 µg m−3 from 2005 to 2015, whereas it decreased from the peak to 65.87±8.52 µg m−3 during 2015–2018. Besides this, the estimated 8 h O3 concentrations exhibited notable spatial variation, with the highest values in some cities of the northern Tibetan Plateau, such as Huangnan (73.48±4.53 µg m−3) and Hainan (72.24±5.34 µg m−3), followed by the cities in the central region, including Lhasa (65.99±7.24 µg m−3) and Shigatse (65.15±6.14 µg m−3), and the lowest O3 concentration occurred in a city of the southeastern Tibetan Plateau called Aba (55.17±12.77 µg m−3). Based on the 8 h O3 critical value (100 µg m−3) provided by the World Health Organization (WHO), we further estimated the annual mean nonattainment days over the Tibetan Plateau. It should be noted that most of the cities on the Tibetan Plateau had excellent air quality, while several cities (e.g. Huangnan, Haidong, and Guoluo) still suffered from more than 40 nonattainment days each year, which should be given more attention in order to alleviate local O3 pollution. The results shown herein confirm that the novel hybrid model improves the prediction accuracy and can be applied to assess the potential health risk, particularly in remote regions with few monitoring sites.


2020 ◽  
Vol 125 (4) ◽  
Author(s):  
Meta Francis Justine ◽  
Kaiwen Pan ◽  
Nambajimana Jean de Dieu ◽  
Fidele Karamage ◽  
Zebene Tadesse ◽  
...  

2008 ◽  
Vol 74 (19) ◽  
pp. 6114-6120 ◽  
Author(s):  
Guishan Zhang ◽  
Na Jiang ◽  
Xiaoli Liu ◽  
Xiuzhu Dong

ABSTRACT The Zoige wetland of the Tibetan plateau is at permanent low temperatures and is a methane emission heartland of the plateau; however, cold-adaptive methanogens in the soil are poorly understood. In this study, a variety of methanogenic enrichments at 15�C and 30�C were obtained from the wetland soil. It was demonstrated that hydrogenotrophic methanogenesis was the most efficient type at 30�C, while methanol supported the highest methanogenesis rate at 15�C. Moreover, methanol was the only substrate to produce methane more efficiently at 15�C than at 30�C. A novel psychrophilic methanogen, strain R15, was isolated from the methanol enrichment at 15�C. Phylogenetic analysis placed strain R15 within the genus Methanolobus, loosely clustered with Methanolobus taylorii (96.7% 16S rRNA similarity). R15 produced methane from methanol, trimethylamine, and methyl sulfide and differed from other Methanolobus species by growing and producing methane optimally at 18�C (specific growth rate of 0.063 � 0.001 h−1) and even at 0�C. Based on these characteristics, R15 was proposed to be a new species and named “Methanolobus psychrophilus” sp. nov. The Km and V max of R15 for methanol conversion were determined to be 87.5 � 0.4 μM and 0.39 � 0.04 mM h−1 at 18�C, respectively, indicating a high affinity and conversion efficiency for methanol. The proportion of R15 in the soil was determined by quantitative PCR, and it accounted for 17.2% � 2.1% of the total archaea, enumerated as 107 per gram of soil; the proportion was increased to 42.4% � 2.3% in the methanol enrichment at 15�C. This study suggests that the psychrophilic methanogens in the Zoige wetland are likely to be methylotrophic and to play a role in methane emission of the wetland.


2017 ◽  
Vol 37 (19) ◽  
Author(s):  
王蓥燕 WANG Yingyan ◽  
卢圣鄂 LU Sheng'e ◽  
陈小敏 CHEN Xiaomin ◽  
李跃飞 LI Yuefei ◽  
辜运富 GU Yunfu

2021 ◽  
Author(s):  
Haiyan Feng ◽  
Zhe Wang ◽  
Pengli Jia ◽  
Jingping Gai ◽  
Baodong Chen ◽  
...  

Abstract Soil CO2-fixing microbes play a significant role in CO2-fixation in the terrestrial ecosystems, particularly in the Tibetan Plateau. To understand carbon sequestration by soil CO2-fixing microbes and the carbon cycling in alpine meadow soils, microbial diversity and their driving environmental factors were explored along an elevation gradient from 3900m to 5100m, on both east and west slopes of Mila Mountain region on the Tibetan Plateau. The CO2-fixing microbial communities were characterized by high-throughput sequencing targeting the cbbL gene,encoding the large subunit for the CO2-fixing protein ribulose 1, 5-bisphosphate carboxylase/oxygenase. The overall OTU abundance is concentrated at an altitude between 4300m~4900m. The species richness and distribution uniformity on the east slope is better than those on the west slope. In terms of microbial community composition, Proteobacteria is dominant, and the most abundant genera are Cupriavidus, Rhodobacter, Sulfurifustis and Thiobacillus. The CO2-fixing microbial community structure dramatically shifted along the elevation. It was jointly driven by vegetation coverage, soil moisture content, and soil organic carbon and soil particle size, and most environmental factors are positively correlated. Our results are helpful to understand the variation in soil microbial community and its role in soil carbon cycling along elevation gradients.


2010 ◽  
Vol 60 (9) ◽  
pp. 2165-2169 ◽  
Author(s):  
Jianqing Tian ◽  
Yanfen Wang ◽  
Xiuzhu Dong

An obligately anaerobic, methanogenic archaeon, strain HCT, was isolated from soil of the Zoige wetland on the Tibetan plateau, China. The strain was isolated through construction of an artificial butyrate-degrading consortium in co-culture with a syntrophic bacterium, ‘Syntrophomonas erecta subsp. sporosyntropha’ JCM 13344. Cells of strain HCT were irregular coccoids, 0.8–2 μm in diameter, that occurred singly and utilized only H2/CO2 for growth and methane production. Growth occurred at 18–45 °C (optimum around 37 °C). The pH for growth was 5.0–8.5 (optimal growth around pH 6.6). The G+C content of the genomic DNA was 60.2 mol%. 16S rRNA gene sequence analysis indicated that strain HCT was affiliated to the genus Methanoculleus, with sequence similarities of 94.8–97.2 % to existing members. However, strain HCT was distinguished from described Methanoculleus species by not using formate for growth or methane formation and not requiring acetate as a growth factor. On the basis of phylogenetic analysis and phenotypic characteristics, the novel species Methanoculleus hydrogenitrophicus sp. nov. is proposed, with strain HCT (=CGMCC 1.5146T =JCM 16311T) as the type strain.


2011 ◽  
Vol 63 (4) ◽  
pp. 835-843 ◽  
Author(s):  
Juanli Yun ◽  
Guoqiang Zhuang ◽  
Anzhou Ma ◽  
Hongguang Guo ◽  
Yanfen Wang ◽  
...  

2019 ◽  
Vol 113 (12) ◽  
pp. 1727-1736 ◽  
Author(s):  
Nicolai Kallscheuer ◽  
Mareike Jogler ◽  
Sandra Wiegand ◽  
Stijn H. Peeters ◽  
Anja Heuer ◽  
...  

AbstractPlanctomycetes is a fascinating phylum of mostly aquatic bacteria, not only due to the environmental importance in global carbon and nitrogen cycles, but also because of a unique cell biology. Their lifestyle and metabolic capabilities are not well explored, which motivated us to study the role of Planctomycetes in biofilms on marine biotic surfaces. Here, we describe the novel strain Pan54T which was isolated from algae in a hydrothermal area close to the volcanic island Panarea in the Tyrrhenian Sea, north of Sicily in Italy. The strain grew best at pH 9.0 and 26 °C and showed typical characteristics of planctomycetal bacteria, e.g. division by polar budding, formation of aggregates and presence of stalks and crateriform structures. Phylogenetically, the strain belongs to the genus Rubinisphaera. Our analysis suggests that Pan54T represents a novel species of this genus, for which we propose the name Rubinisphaera italica sp. nov. We suggest Pan54T (= DSM 29369 = LMG 29789) as the type strain of the novel species.


Author(s):  
Juanli Yun ◽  
Andrew T. Crombie ◽  
Muhammad Farhan Ul Haque ◽  
Yuanfeng Cai ◽  
Xiaowei Zheng ◽  
...  

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