generalised additive model
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2022 ◽  
pp. bjophthalmol-2021-320541
Author(s):  
Shengjie Li ◽  
Yichao Qiu ◽  
Jian Yu ◽  
Mingxi Shao ◽  
Yingzhu Li ◽  
...  

AimTo evaluate the association between serum levels of complement component (C) 3, C4 and C1q and visual field (VF) loss in patients with primary angle closure glaucoma (PACG).MethodsIn this prospective cohort study, a total of 308 patients with PACG were included. The patients were followed up every 6 months (at least 2 years), with clinical examination and VF testing. Based on their sex and age, the subjects were stratified into male and female subgroups, and by age at <60 and ≥60 years per subgroup.ResultsOne hundred twenty-three (39.94%) patients showed glaucoma VF progression. The serum levels of C3, C4 and C1q were significantly lower (p<0.05) in the progression group compared with the non-progression group in the ≥60 years female subgroup. In female patients with age ≥60 years, (1) lower levels of baseline C3 (HR=0.98, p<0.001), C4 (HR=0.96, p=0.01) and C1q levels (HR=0.99, p=0.003) were associated with a greater risk of VF progression; (2) patients with lower C3 levels had significantly (p<0.05) higher rates of VF loss progression, similar to those with lower C4 and lower C1q levels; and (3) the generalised additive model revealed a negative correlation between baseline C3 (p<0.001), C4 (p<0.001) and C1q (p<0.001) levels with the risk of VF progression. No statistical significance was observed in the male (<60 and ≥60 years) and female (<60 years) subgroups.ConclusionDecreased C3, C4 and C1q levels at baseline were significantly associated with a greater risk of VF loss progression only in older women with PACG.


BMJ Open ◽  
2022 ◽  
Vol 12 (1) ◽  
pp. e056281
Author(s):  
Linfeng He ◽  
Lijuan Bai ◽  
Lihua Liu ◽  
Yun Liu ◽  
Ruiyun Wang ◽  
...  

ObjectiveTo evaluate arteriosclerosis using Cardio-Ankle Vascular Index (CAVI) and to explore the relation between the body fat percentage (BFP) and CAVI.DesignA retrospective observational study.Setting and participantsA total of 1152 patients admitted to a geriatric unit and general practice at a mega hospital in Wuhan, China, from November 2018 to November 2019 were included in this study.Primary outcomeAssociation between BFP and CAVI.ResultsMultiple linear regression analysis showed that BFP was positively correlated with CAVI after correction for potential confounding variables (β=0.03; 95% CI: 0.01 to 0.05); this association persisted after BFP was treated by quartile categorical variables and the trend test was statistically significant (p for trend=0.002). Meanwhile, the generalised additive model showed a non-linear association between BFP and CAVI. When BFP<20.6%, BFP is not associated with CAVI for (β=−0.02; 95% CI: −0.06 to 0.03), but when BFP≥20.6%, there is a linear positive association between BFP and CAVI (β=0.05; 95% CI: 0.02 to 0.07). Subgroup analysis showed that there was an interaction between BFP and CAVI in the age stratification (p interaction=0.038).ConclusionBFP was non-linearly correlated with CAVI, with a 0.05 increase in CAVI for every 1% increase in BFP when BFP≥20.6% and a 0.03 increase in CAVI in those >65 years of age.


2021 ◽  
pp. 00552-2021
Author(s):  
Luis Felipe Reyes ◽  
Srinivas Murthy ◽  
Esteban Garcia-Gallo ◽  
Mike Irvine ◽  
Laura Merson ◽  
...  

Due to the large number of patients with severe COVID-19, many were treated outside of the traditional walls of the ICU, and in many cases, by personnel who were not trained in critical care. The clinical characteristics and the relative impact of caring for severe COVID-19 patients outside of the ICU is unknown. This was a multinational, multicentre, prospective cohort study embedded in the ISARIC WHO COVID-19 platform. Severe COVID-19 patients were identified as those admitted to an ICU and/or those treated with one of the following treatments: invasive or non-invasive mechanical ventilation, high-flow nasal cannula, inotropes, and vasopressors. A logistic Generalised Additive Model was used to compare clinical outcomes among patients admitted and not to the ICU. A total of 40 440 patients from 43 countries and six continents were included in this analysis. Severe COVID-19 patients were frequently male (62.9%), older adults (median [IQR], 67 years [55, 78]), and with at least one comorbidity (63.2%). The overall median (IQR) length of hospital stay was 10 days (5–19) and was longer in patients admitted to an ICU than in those that were cared for outside of ICU (12 [6–23] versus 8 [4–15] days, p<0.0001). The 28-day fatality ratio was lower in ICU-admitted patients (30.7% [5797/18831] versus 39.0% [7532/19295], p<0.0001). Patients admitted to an ICU had a significantly lower probability of death than those who were not (adjusted OR:0.70, 95%CI: 0.65-0.75, p<0.0001). Patients with severe COVID-19 admitted to an ICU had significantly lower 28-day fatality ratio than those cared for outside of an ICU.


Author(s):  
Paul Burns ◽  
Volkmar Timmermann ◽  
Jon M. Yearsley

AbstractThe ascomycete Hymenoscyphus fraxineus has spread across most of the host range of European ash with a high level of mortality, causing important economic, cultural and environmental effects. We present a novel method combining a Monte-Carlo approach with a generalised additive model that confirms the importance of meteorology to the magnitude and timing of H. fraxineus spore emissions. The variability in model selection and the relative degree to which our models are over- or under-fitting the data has been quantified. We find that both the daily magnitude and timing of spore emissions are affected by meteorology during and prior to the spore emission diurnal peak. We found the daily emission magnitude has the strongest associations to weekly average net radiation and leaf moisture before the emission, soil temperature during the day before emission and net radiation during the spore emission. The timing of the daily peak in spore emissions has the strongest associations to net radiation both during spore emission and in the day preceding the emission. The seasonal peak in spore emissions has a near-exponential increase/decrease, and the mean daily emission peak is approximately Gaussian.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Małgorzata Raduła ◽  
Sebastian Świerszcz ◽  
Marcin Nobis ◽  
Sylwia Nowak ◽  
Agnieszka Nobis ◽  
...  

AbstractIn a period of ongoing climate changes, identifying drivers of overall and endemic species diversity is a key element in constructing new ecological patterns and determining the main goals of conservation. Such studies are especially crucial if they concern biodiversity hotspot areas. In this study, we explore patterns and drivers of plant endemism (the proportion of endemic plant species to overall plant species richness; PE) in Tajikistan. We used three groups of climatic measures featuring the contemporary and glacial climates as well as climatic changes since the Last Glacial Maximum in the Pleistocene (LGM). To explore relationships between PE and climatic groups, and the most important climatic variables, we applied the Generalised Additive Model and regression trees method respectively. Glacial climate predicted PE variation the most (74.3%), followed by climate stability (55.4%) and current climate (62.4%). The most important variables represented change in precipitation of driest quarter, glacial mean annual temperature and current annual precipitation. LGM climate and its change to date have the greatest influence on contemporary PE patterns in Tajikistan, revealing the evolutionary dependencies between limited-range plants and past climate. Accordingly, annual temperature and precipitation regimes have been the most crucial drivers of PE since the LGM until today. The study revealed the dependence of the PE on a stabilized water-energy supply. The changing temperature and precipitations regimes during the ongoing climate warming may, therefore, increases the threat to geographically isolated cryophilous plants of Tajikistan, while their escape potential to suitable cold habitats is highly topographically limited.


2021 ◽  
Vol 13 (3) ◽  
pp. 1072-1082
Author(s):  
Rajneesh Dwevedi ◽  
Vishal Deo ◽  
Janmejay Sethy ◽  
Renuka Gupta ◽  
Mahendiran Mylswamy

The breeding population of birds are dynamic and are affected by multiple factors including climate and local environmental conditions. However, often to understand such relations requires long-term data modelling. Such long-term population data is either lacking or has data gaps. This study demonstrates the use of Multiple Imputation Chained Equation (MICE) to overcome the problem of missing data population census. This is also the first comprehensive study, modelling the 36-year (1980-2015) long-term breeding population data of a near-threatened bird, Painted Stork, from Keoladeo National Park, India. It tests the effect of local water availability, i.e., water released to the park, and regional rainfall, i.e, climatic condition, on the breeding population using Generalised Additive Model (GAM). Both imputation and observed data series-based GAM models identified the local water availability as the most important factor influencing the breeding population of Painted Stork. More than 80% population decline was observed, despite a slight increase in the rainfall at regional scale, suggesting local hydrological conditions are limiting to the breeding population and not the climate. According to the visual assessment of partial plot of GAM, minimum 200-300 million cubic feet of water is needed each nesting season to ensure  sustenance of breeding population. Post-1989, the breeding population was unable to match the long-term mean (~726) except in 1992, 1995, and 1996. The maximum decline was observed between 2000-2009, a decade of frequent droughts. The breeding population was stable until the end of this study, but it was far below the long term mean.


Author(s):  
Xiaodong Li ◽  
Jing Wang ◽  
Ya Liu ◽  
Yingbin Wang

Background: Portunus trituberculatus is an important economic crab in the East China Sea. With the increase of tonnage and power of offshore fishing vessels, fishing intensity also increases, which has caused great pressure on P. trituberculatus resources. Protecting P. trituberculatus and achieving sustainable utilisation of resources are urgent problems that need to be solved. Therefore, protection and rational development of P. trituberculatus resources are important to accurately understand its spatial and temporal distribution. Methods: In this study, the temporal and spatial distribution predictive models of P. trituberculatus in the northern East China Sea were built on the basis of three analysis methods (generalised additive model [GAM], random forest [RF] and artificial neural network [ANN]) using bottom trawl survey data and environmental data from 2006 to 2007. The fitting and prediction performances of these three models were compared. Result: Season and sea bottom temperature were the most important factors on the distribution of P. trituberculatus. The fitting performance of ANNs was better than those of GAMs and RFs, but its predictive performance was worse than those of GAMs and RFs. Therefore, RFs was the appropriate model in predicting the distribution of P. trituberculatus in the northern East China Sea. The abundance of P. trituberculatus was significantly higher in summer than in other seasons (P less than 0.01) and generally higher in the northern part of the study area than in the southern part in all seasons.


Open Heart ◽  
2021 ◽  
Vol 8 (2) ◽  
pp. e001720
Author(s):  
Edda Bahlmann ◽  
Eigir Einarsen ◽  
Dana Cramariuc ◽  
Helga Midtbø ◽  
Costantino Mancusi ◽  
...  

ObjectivesIn hypertension, low myocardial energetic efficiency (MEEi) has been documented as an integrated marker of metabolic and left ventricular (LV) myocardial dysfunction. We tested the predictive performance of MEEi in initially asymptomatic aortic stenosis (AS) patients free from diabetes and known cardiovascular disease.MethodsData from 1703 patients with mostly moderate AS enrolled in the Simvastatin and Ezetimibe in Aortic Stenosis study followed for 4.3 years was used. MEE was calculated from Doppler stroke volume/([heart rate/60]) and indexed to LV mass (MEEi). The threshold value for MEEi associated with increased mortality was identified in generalised additive model with smoothing splines. Covariables of MEEi were identified in logistic regression analysis. Outcome was assessed in Cox regression analysis and reported as HR and 95% CI.ResultsMEEi <0.34 mL/s per gram was associated with increased cardiovascular mortality (n=80) (HR 2.53 (95% CI 1.50 to 4.28)) and all-cause mortality (n=155) (HR 1.74 (95% CI 1.20 to 2.52)) (both p<0.01). The association was independent of confounders of low MEEI (<0.34 mL/s per gram) identified in multivariable logistic regression analysis, including more severe AS, higher body mass index, lower LV midwall shortening and ejection fraction and presence of hypertension. Comparison of the Cox models with and without MEEi among the covariables demonstrated that MEEi significantly improved the prognostic yield (both p<0.01).ConclusionsIn patients with initially asymptomatic AS, low MEEi was associated with clustering of cardiometabolic risk factors, lower LV myocardial function and subsequent increased mortality during 4.3 years follow-up, independent of known prognosticators.Trial registration numberNCT00092677.


2021 ◽  
Vol 75 (8) ◽  
Author(s):  
Mònica Arso Civil ◽  
Emily Hague ◽  
Izzy Langley ◽  
Lindesay Scott-Hayward

AbstractFostering and allo-suckling are widespread among pinnipeds, and several hypotheses have been formulated to explain their occurrence. Here, we describe the occurrence of allo-suckling in harbour seals from photo-identification data of females and pups in Orkney (Scotland) during the pupping seasons between 2016 and 2019. We used a generalised linear model framework to investigate the effect of allo-suckling on the duration of lactation (females) and of nursing period (pups). A generalised additive model framework was used to explore how the probability of allo-suckling varied throughout the pupping season, and with changes in mother-pup separation time. Allo-suckling was observed in 31 females, at higher rates (18–37% of lactating females and 18–47% of the pups every year) than those observed in other phocid populations, with 13 females allo-suckling in multiple years. The duration of the pups’ nursing period was not affected by allo-suckling occurrence. However, females in mother-pup pairs where both mother and pup allo-suckled had longer lactation duration than when only the pup allo-suckled, or than in pairs where no allo-suckling was observed. The probability of allo-suckling increased during the pupping season and with increased mother-pup separation time. However, the proximate causes and the consequences on future reproductive output and pup survival remain unknown.Significance statementAllo-suckling, where females nurse others’ young, is widespread in pinnipeds, particularly among true seals. Given the high costs of lactation in pinnipeds, allo-suckling is a puzzling behaviour. Using photo-identification and field observations, we examined the occurrence of allo-suckling in harbour seals at a colony in Orkney, Scotland. We found that allo-suckling is common among seals at the study site, and at rates higher than reported elsewhere. Our results show that allo-suckling does not appear to affect the duration of the pups’ nursing period but does increase the lactation duration of females who suckle other pups and whose own pups also allo-suckle. This study highlights an area which requires further investigation as the energetic costs and benefits of allo-suckling remain poorly understood.


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