scholarly journals Draft Genome Sequences of Two Pseudomonas Strains That Are Able To Use Furan Derivatives as Their Sole Carbon Source

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Carlos Farkas ◽  
Raúl A. Donoso ◽  
Carla Gárate-Castro ◽  
Pamela Villegas ◽  
Roberto E. Durán ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Carbon Source ◽  
Sole Carbon Source ◽  
Draft Genome ◽  
Genome Sequences ◽  
Catabolic Pathways ◽  
Furan Derivatives ◽  
Treatment Facilities ◽  
Shed Light

Pseudomonas sp. strains ALS1279 and ALS1131 were isolated from wastewater treatment facilities on the basis of their ability to use furfural, a key lignocellulose-derived inhibitor, as their only carbon source. Here, we present the draft genome sequences of both strains, which can shed light on catabolic pathways for furan compounds in pseudomonads.

scholarly journals Draft Genome Sequences of Three Clostridia Isolates Involved in Lactate-Based Chain Elongation

2020 ◽  
Vol 9 (32) ◽  
Author(s):  
Bin Liu ◽  
Denny Popp ◽  
Heike Sträuber ◽  
Hauke Harms ◽  
Sabine Kleinsteuber
Keyword(s):  
Carbon Source ◽  
Sole Carbon Source ◽  
Draft Genome ◽  
Chain Elongation ◽  
Genome Sequences ◽  
High Quality ◽  
Long Read

ABSTRACT Hitherto, few species have been reported to convert lactate to n-caproate. Here, we report the high-quality draft genomes of three Clostridia strains isolated on lactate as the sole carbon source. The genomes were assembled using a hybrid short- and long-read sequencing approach. The genes involved in lactate-based chain elongation were identified.

scholarly journals Draft Genome Sequences of Bacterial Strains Capable of Degrading Ulvan from the Green Alga Ulva ohnoi

2020 ◽  
Vol 9 (3) ◽  
Author(s):  
Ratna Mondal ◽  
Miho Satoh ◽  
Kouhei Ohnishi
Keyword(s):  
Carbon Source ◽  
Green Alga ◽  
Sole Carbon Source ◽  
Draft Genome ◽  
Bacterial Strains ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Degradation ◽  
Ulva Ohnoi

We present here the draft genome sequences of four marine bacterial strains which can use ulvan as their sole carbon source. We used ulvan extracted from the green alga Ulva ohnoi. Each bacterium contains a polysaccharide-utilizing locus, which is necessary for the complete degradation of ulvan.

scholarly journals Draft Genome Sequences of Eight CanadianCitrobacter braakiiandCitrobacter freundiiStrains

2019 ◽  
Vol 8 (27) ◽  
Author(s):  
Marc-Olivier Duceppe ◽  
Beverley Phipps-Todd ◽  
Catherine Carrillo ◽  
Hongsheng Huang
Keyword(s):  
Wastewater Treatment ◽  
Infectious Diseases ◽  
Draft Genome ◽  
Citrobacter Freundii ◽  
Opportunistic Pathogens ◽  
Genome Sequences ◽  
Gram Negative ◽  
Content Type ◽  
Treatment Facilities

ABSTRACTCitrobacter braakiiandCitrobacter freundiiare Gram-negative opportunistic pathogens associated with many infectious diseases, including septicemia, in humans and animals. Here, we report the draft genome sequences of sevenC. braakiistrains and oneC. freundiistrain isolated from Canadian wastewater treatment facilities.

scholarly journals Draft Genome Sequence of a Chlorinated-Ethene Degrader,Cupriavidus necatorStrain PHE3-6 (NBRC 110655)

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Kenta Yonezuka ◽  
Jun Shimodaira ◽  
Michiro Tabata ◽  
Shun Nagase ◽  
Daisuke Kasai ◽  
...  
Keyword(s):  
Carbon Source ◽  
Genome Sequence ◽  
Sole Carbon Source ◽  
Draft Genome ◽  
Cupriavidus Necator ◽  
Chlorinated Ethenes ◽  
Draft Genome Sequence ◽  
Chlorinated Ethene

Cupriavidus necatorstrain PHE3-6 grows on phenol as a sole carbon source and cometabolizescis-andtrans-dichloroethenes and trichloroethene. Here, we report the draft genome sequence of PHE3-6, which provides insights into the degradation system of phenol and chlorinated ethenes.

scholarly journals Genome Sequence of Bacillus megaterium O1, a Saponin-Degrading Bacterium

2020 ◽  
Vol 9 (40) ◽  
Author(s):  
Cassandra E. Overney ◽  
Jean J. Huang
Keyword(s):  
Carbon Source ◽  
Genome Sequence ◽  
Bacillus Megaterium ◽  
Sole Carbon Source ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Degrading Bacterium ◽  
Sapindus Saponaria ◽  
Insight Into

ABSTRACT Bacillus megaterium strain O1 was isolated from a soapnut (Sapindus saponaria) surface and degrades Quillaja saponin as a sole carbon source. We report the draft genome sequence of B. megaterium O1, which has an estimated size of 5.1 Mb. Study of this isolate will provide insight into mechanisms of saponin degradation.

scholarly journals Draft Genome Sequences of Three β-Lactam-Catabolizing Soil Proteobacteria

2017 ◽  
Vol 5 (32) ◽  
Author(s):  
Terence S. Crofts ◽  
Bin Wang ◽  
Aaron Spivak ◽  
Tara A. Gianoulis ◽  
Kevin J. Forsberg ◽  
...  
Keyword(s):  
Carbon Cycle ◽  
Draft Genome ◽  
Carbon Sources ◽  
Genome Sequences ◽  
Catabolic Pathways

ABSTRACT Most antibiotics are derived from the soil, but their catabolism there, which is necessary to close the antibiotic carbon cycle, remains uncharacterized. We report the first draft genome sequences of soil Proteobacteria identified for subsisting solely on β-lactams as their carbon sources. The genomes encode multiple β-lactamases, although their antibiotic catabolic pathways remain enigmatic.

scholarly journals Draft Genome Sequences of Three Terrestrial Isoprene-Degrading Rhodococcus Strains

2017 ◽  
Vol 5 (45) ◽  
Author(s):  
Andrew T. Crombie ◽  
Helen Emery ◽  
Terry J. McGenity ◽  
J. Colin Murrell
Keyword(s):  
Carbon Source ◽  
Draft Genome ◽  
Gc Content ◽  
Tree Leaves ◽  
Genome Sequences ◽  
East Anglia ◽  
The University

ABSTRACT Isoprene is produced in abundance by plants and constitutes a carbon source for microbes. The genomes of three isoprene degraders isolated from tree leaves or soil from the campus of the University of East Anglia were sequenced. These high-GC-content isolates are actinobacteria belonging to the genus Rhodococcus.

scholarly journals Draft Genome Sequence of Alcaligenes faecalis Strain IITR89, an Indole-Oxidizing Bacterium

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Raj Kumar Regar ◽  
Vivek Kumar Gaur ◽  
Gayatri Mishra ◽  
Sudhir Jadhao ◽  
Mohan Kamthan ◽  
...  
Keyword(s):  
Carbon Source ◽  
Genome Sequence ◽  
Sole Carbon Source ◽  
Draft Genome ◽  
Alcaligenes Faecalis ◽  
Draft Genome Sequence ◽  
Complete Sequencing ◽  
Insight Into

We report the draft genome sequence of Alcaligenes faecalis strain IITR89, a bacterium able to form indigo by utilizing indole as the sole carbon source. The Alcaligenes species is increasingly reported for biodegradation of diverse toxicants and thus complete sequencing may provide insight into biodegradation capabilities and other phenotypes.

scholarly journals Draft Genome Sequence of Paenibacillus sp. Strain OT2-17, a Triclosan-Degrading Rhizobacterium

2020 ◽  
Vol 9 (16) ◽  
Author(s):  
Ashley M. Garcia ◽  
Priscilla P. Carlo ◽  
Monica O. Mendez
Keyword(s):  
Carbon Source ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Sole Carbon Source ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
A Genome ◽  
Paenibacillus Sp

We report the draft genome sequence of a strain (OT2-17) of Paenibacillus isolated from the rhizosphere of onions irrigated with triclosan. Strain OT2-17 demonstrated the use of triclosan as the sole carbon source. A genome assembly of approximately 5.8 Mb was generated with a calculated G+C content of 45.5%.

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