scholarly journals Draft Genome Sequences of Six Vibrio Strains Isolated from the Atlantic Intertidal Marine Sponge Ophlitaspongia papilla

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Anoop Alex ◽  
Vijayakumari Pratheepa ◽  
Joana Martins ◽  
Agostinho Antunes
Keyword(s):  
Comparative Genomics ◽  
Marine Sponge ◽  
Molecular Mechanisms ◽  
Draft Genome ◽  
Genome Mining ◽  
Genome Sequences ◽  
Content Type ◽  
Bioactive Potential ◽  
Microbial Symbioses

ABSTRACT We report here the genome sequences of six Vibrio strains isolated from an Atlantic intertidal marine sponge, Ophlitaspongia papilla. Genome mining and comparative genomics will assist in deciphering the bioactive potential of the symbiotic microbes and molecular mechanisms of sponge-microbial symbioses.

scholarly journals Draft Genome Sequences of Two Mycobacterium bovis Strains Isolated from Beef Cattle in Paraguay

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Lidia Sanabria ◽  
Lorena Lagrave ◽  
Christiane Nishibe ◽  
Augusto C. A. Ribas ◽  
Martín J. Zumárraga ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
South America ◽  
Beef Cattle ◽  
Lymph Nodes ◽  
Mycobacterium Bovis ◽  
Draft Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Beef Farm

ABSTRACT This work reports the draft genome sequences of the Mycobacterium bovis strains M1009 and M1010, isolated from the lymph nodes of two infected cows on a beef farm in Paraguay. Comparative genomics between these strains and other regional strains may provide more insights regarding M. bovis epidemiology in South America.

scholarly journals Draft Genome Sequences of 28 Actinobacteria of the Family Microbacteriaceae Associated with Nematode-Infected Plants

2021 ◽  
Vol 10 (9) ◽  
Author(s):  
Sergey V. Tarlachkov ◽  
Irina P. Starodumova ◽  
Lubov V. Dorofeeva ◽  
Natalia V. Prisyazhnaya ◽  
Tatiana V. Roubtsova ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Molecular Mechanisms ◽  
Sequence Data ◽  
Draft Genome ◽  
Parasitic Nematodes ◽  
Plant Parasitic Nematodes ◽  
Genome Sequences ◽  
The Family ◽  
Baseline Information ◽  
Plant Parasitic

ABSTRACT Draft genome sequences of 28 strains of Microbacteriaceae from plants infested by plant-parasitic nematodes were obtained using Illumina technology. The sequence data will provide useful baseline information for the development of comparative genomics and systematics of Microbacteriaceae and facilitate understanding of molecular mechanisms involved in interactions between plants and nematode-associated bacterial complexes.

scholarly journals Draft Genome Sequences of New Genomospecies “Candidatus Pectobacterium maceratum” Strains, Which Cause Soft Rot in Plants

2018 ◽  
Vol 6 (15) ◽  
pp. e00260-18 ◽  
Author(s):  
Fedor V. Shirshikov ◽  
Aleksei A. Korzhenkov ◽  
Kirill K. Miroshnikov ◽  
Anastasia P. Kabanova ◽  
Alla P. Barannik ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Draft Genome ◽  
Soft Rot ◽  
Genome Sequences ◽  
Phytopathogenic Bacteria ◽  
Content Type

ABSTRACT Investigation of collections of phytopathogenic bacteria has revealed some strains distinct from known Pectobacterium spp. We report here the draft genome sequences of five such strains, isolated during the period of 1947 to 2012. Based on comparative genomics, we propose a new candidate genomospecies of the genus Pectobacterium, “Candidatus Pectobacterium maceratum.”

scholarly journals Draft Genome Sequences of Three Isolates of Golubevia sp. Basidiomycete Fungi Isolated from Powdery Mildew Pustules

2020 ◽  
Vol 9 (23) ◽  
Author(s):  
Lina Russ ◽  
Sven Warris ◽  
Carin Lombaers-van der Plas ◽  
Lia H. Groenenboom-de Haas ◽  
Jan H. G. Cordewener ◽  
...  
Keyword(s):  
Powdery Mildew ◽  
Molecular Mechanisms ◽  
Draft Genome ◽  
Blumeria Graminis ◽  
Genome Sequences ◽  
Content Type ◽  
Basidiomycete Fungi

ABSTRACT The genomes of three Golubevia isolates (BC0812, BC0850, and BC0902) that have been shown to reduce conidiation of Blumeria graminis f. sp. tritici were sequenced using a dual-platform approach. The assembled genomes will help to elucidate the molecular mechanisms underlying the biocontrol effect of this understudied group.

scholarly journals Draft Genome Sequences of Type VI Secretion System-Encoding Vibrio fischeri Strains FQ-A001 and ES401

2019 ◽  
Vol 8 (20) ◽  
Author(s):  
Katherine M. Bultman ◽  
Andrew G. Cecere ◽  
Tim Miyashiro ◽  
Alecia N. Septer ◽  
Mark J. Mandel
Keyword(s):  
Comparative Genomics ◽  
Direct Contact ◽  
Vibrio Fischeri ◽  
Draft Genome ◽  
Secretion System ◽  
Euprymna Scolopes ◽  
Type Vi Secretion System ◽  
Genome Sequences ◽  
Content Type ◽  
Type Vi Secretion

The type VI secretion system (T6SS) facilitates lethal competition between bacteria through direct contact. Comparative genomics has facilitated the study of these systems in Vibrio fischeri, which colonizes the squid host Euprymna scolopes.

scholarly journals Mining Genomes of Three Marine Sponge-Associated Actinobacterial Isolates for Secondary Metabolism

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Hannes Horn ◽  
Ute Hentschel ◽  
Usama Ramadan Abdelmohsen
Keyword(s):  
Secondary Metabolism ◽  
Marine Sponge ◽  
Draft Genome ◽  
Genome Mining ◽  
Gene Clusters ◽  
Genome Sequences

Here, we report the draft genome sequences of three actinobacterial isolates, Micromonospora sp. RV43, Rubrobacter sp. RV113, and Nocardiopsis sp. RV163 that had previously been isolated from Mediterranean sponges. The draft genomes were analyzed for the presence of gene clusters indicative of secondary metabolism using antiSMASH 3.0 and NapDos pipelines. Our findings demonstrated the chemical richness of sponge-associated actinomycetes and the efficacy of genome mining in exploring the genomic potential of sponge-derived actinomycetes.

scholarly journals Draft Genome Sequences of 12 Mycolicibacterium smegmatis Strains Resistant to Imidazo[1,2-b][1,2,4,5]Tetrazines

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Aleksey A. Vatlin ◽  
Kirill V. Shur ◽  
Valery N. Danilenko ◽  
Dmitry A. Maslov
Keyword(s):  
Draft Genome ◽  
Transcriptional Repressor ◽  
Antituberculosis Drug ◽  
Genome Sequences ◽  
Content Type ◽  
Drug Candidates

Here, we report 12 draft genome sequences of mutant Mycolicibacterium smegmatis strains resistant to imidazo[1,2-b][1,2,4,5]tetrazines, which are antituberculosis drug candidates. We have identified 7 different mutations in the MSMEG_1380 gene, which encodes the AcrR/TetR_N transcriptional repressor, which may activate efflux-mediated resistance.

scholarly journals Draft Genome Sequences of Three Flavobacterium psychrophilum Strains Isolated from Diseased Ayu (Plecoglossus altivelis altivelis) Caught at Three Sites in the Kagami River in Kochi, Japan

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Hazuki Yamashita ◽  
Takayuki Wada ◽  
Yusuke Kato ◽  
Takuji Ikeda ◽  
Masayuki Imajoh
Keyword(s):  
Draft Genome ◽  
Psychrophilic Bacterium ◽  
Genome Sequences ◽  
Plecoglossus Altivelis ◽  
Gram Negative ◽  
Content Type ◽  
Flavobacterium Psychrophilum ◽  
Skin Ulcers ◽  
The Family

Flavobacterium psychrophilum is a Gram-negative, psychrophilic bacterium within the family Flavobacteriaceae. Here, we report the draft genome sequences of three F. psychrophilum strains isolated from skin ulcers of diseased ayu caught by tomozuri angling at three sites in the Kagami River in Japan.

scholarly journals Draft Genome Sequences of Escherichia coli Strains FP2 and FP3, Isolated from the Canada Goose (Branta canadensis)

2018 ◽  
Vol 7 (9) ◽  
Author(s):  
Allison L. Denny ◽  
Susan E. Arruda
Keyword(s):  
Escherichia Coli ◽  
Draft Genome ◽  
Branta Canadensis ◽  
Canada Goose ◽  
Genome Sequences ◽  
Content Type

Draft genomes of two strains of Escherichia coli, FP2 and FP3, isolated from the feces of the Canada goose (Branta canadensis), were sequenced. Genome sizes were 5.26 Mb with a predicted G+C content of 50.54% (FP2) and 5.07 Mb with a predicted G+C content of 50.41% (FP3).

scholarly journals Draft Genome Sequences of Fungus Aspergillus calidoustus

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Fabian Horn ◽  
Jörg Linde ◽  
Derek J. Mattern ◽  
Grit Walther ◽  
Reinhard Guthke ◽  
...  
Keyword(s):  
Secondary Metabolite ◽  
Genome Sequence ◽  
Functional Annotation ◽  
Draft Genome ◽  
Genome Mining ◽  
Gene Clusters ◽  
Draft Genome Sequence ◽  
Genome Sequences

Here, we report the draft genome sequence of Aspergillus calidoustus (strain SF006504) . The functional annotation of A. calidoustus predicts a relatively large number of secondary metabolite gene clusters. The presented genome sequence builds the basis for further genome mining.

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