scholarly journals Draft Genome Sequence of Nitrosomonas sp. Strain APG5, a Betaproteobacterial Ammonia-Oxidizing Bacterium Isolated from Beach Sand

2019 ◽  
Vol 8 (21) ◽  
Author(s):  
Hidetoshi Urakawa ◽  
Jorie Skutas ◽  
Jose V. Lopez
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Draft Genome Sequence ◽  
Beach Sand ◽  
Northwest Coast ◽  
Content Type ◽  
Nitrosomonas Oligotropha ◽  
Ammonia Oxidizing Bacterium ◽  
A New Species

Nitrosomonas sp. strain APG5 (=NCIMB 14870 = ATCC TSA-116) was isolated from dry beach sand collected from a supralittoral zone of the northwest coast of the United States. The draft genome sequence revealed that it represents a new species of the cluster 6 Nitrosomonas spp. that is closely related to Nitrosomonas ureae and Nitrosomonas oligotropha.

scholarly journals Draft Genome Sequence of Pelagicola sp. Strain LXJ1103, Isolated from Coastal Surface Seawater

2018 ◽  
Vol 7 (14) ◽  
Author(s):  
Dexi Zhao ◽  
Jia Li ◽  
Shan Lin ◽  
Xuejiao Liang ◽  
Xiaopei Lin ◽  
...  
Keyword(s):  
New Species ◽  
Genome Sequence ◽  
Surface Waters ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Surface Seawater ◽  
Content Type ◽  
The Family ◽  
A New Species

Pelagicola sp. strain LXJ1103, a representative of a new species in the family Rhodobacteraceae, was isolated from the coastal surface waters in Xiamen, China.

scholarly journals Genomic Analysis of Xanthomonas oryzae Isolates from Rice Grown in the United States Reveals Substantial Divergence from Known X. oryzae Pathovars

2011 ◽  
Vol 77 (12) ◽  
pp. 3930-3937 ◽  
Author(s):  
L. R. Triplett ◽  
J. P. Hamilton ◽  
C. R. Buell ◽  
N. A. Tisserat ◽  
V. Verdier ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Xanthomonas Oryzae ◽  
Draft Genome Sequence ◽  
Diagnostic Tools ◽  
Putative Gene ◽  
Content Type ◽  
The U.S

ABSTRACTThe speciesXanthomonas oryzaeis comprised of two designated pathovars, both of which cause economically significant diseases of rice in Asia and Africa. AlthoughX. oryzaeis not considered endemic in the United States, anX. oryzae-like bacterium was isolated from U.S. rice and southern cutgrass in the late 1980s. The U.S. strains were weakly pathogenic and genetically distinct from characterizedX. oryzaepathovars. In the current study, a draft genome sequence from two U.S.Xanthomonasstrains revealed that the U.S. strains form a novel clade within theX. oryzaespecies, distinct from all strains known to cause significant yield loss. Comparative genome analysis revealed several putative gene clusters specific to the U.S. strains and supported previous reports that the U.S. strains lack transcriptional activator-like (TAL) effectors. In addition to phylogenetic and comparative analyses, the genome sequence was used for designing robust U.S. strain-specific primers, demonstrating the usefulness of a draft genome sequence in the rapid development of diagnostic tools.

scholarly journals Draft Genome Sequence of Bacillus albus Strain IB84, Isolated from Mexican Soil

2021 ◽  
Vol 10 (17) ◽  
Author(s):  
Jorge H. García-García ◽  
Carlos J. Moreno-Peña ◽  
Cesar I. Hernández-Vásquez ◽  
Luis J. Galán-Wong ◽  
Benito Pereyra-Alférez
Keyword(s):  
New Species ◽  
Bacillus Thuringiensis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Gene Sequences ◽  
Content Type ◽  
A New Species

ABSTRACT Bacillus albus is a new species, but it lies on the borderline with Bacillus thuringiensis. In this work, we report a strain previously identified as Bacillus thuringiensis IB84, which now, based on average nucleotide identity and rRNA 16S, gyrB, groEL, and xre gene sequences, must be identified as Bacillus albus.

scholarly journals Draft Genome Sequence of Mycobacterium virginiense Strain GF75, Isolated from the Mud of a Swine Farm in Japan

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Toshihiro Ito ◽  
Fumito Maruyama ◽  
Kotaro Sawai ◽  
Keiko Nozaki ◽  
Keiko Otsu ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Draft Genome Sequence ◽  
Swine Farm ◽  
Content Type

ABSTRACT Mycobacterium virginiense , a newly described species of the Mycobacterium terrae complex, is a cause of tenosynovitis and osteomyelitis in the United States. Here, we report the 4,849,424-bp draft genome sequence of M. virginiense strain GF75, isolated from a mud sample taken from a Japanese swine farm.

scholarly journals Draft Genome Sequence of “Nocardia suismassiliense” Strain S-137 (CSUR P4007)

2018 ◽  
Vol 6 (16) ◽  
pp. e00212-18
Author(s):  
Mustapha Fellag ◽  
Anthony Levasseur ◽  
Jérémy Delerce ◽  
Fadi Bittar ◽  
Jean-Lou Marié ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Dna Hybridization ◽  
Sus Scrofa ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
A New Species

ABSTRACT “Nocardia suismassiliense” strain S-137 isolated from Sus scrofa feces exhibits a 9.4-Mb (67.1% GC content) draft genome sequence containing 8,658 protein-coding genes, 66 tRNAs, and 9 rRNAs. In silico DNA-DNA hybridization confirmed strain S-137 as representative of a new species, “Nocardia suismassiliense,” closely related to N. tenerifensis and N. brasiliensis.

scholarly journals Draft Genome Sequence of the Fish Strain Edwardsiella tarda NCIMB 2034

2017 ◽  
Vol 5 (20) ◽  
Author(s):  
Noemí Buján ◽  
Aide Lasa ◽  
Alicia E. Toranzo ◽  
Beatriz Magariños
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Edwardsiella Tarda ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Diseased Fish

ABSTRACT Edwardsiella tarda is an important pathogen for fish. The strain NCIMB 2034, obtained from the National Collection of Industrial Food and Marine Bacteria, was isolated from unknown diseased fish in the United States. The draft genome sequence has 3.79 Mb with a G+C content of 57.1% and >3,340 protein-coding genes.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain MWU12-2534b, Isolated from a Wild Cranberry Bog in Truro, Massachusetts

2018 ◽  
Vol 7 (13) ◽  
Author(s):  
Ghazal Ebadzadsahrai ◽  
Jonathon Thomson ◽  
Scott Soby
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Draft Genome Sequence ◽  
Cape Cod ◽  
Pseudomonas Sp ◽  
Content Type ◽  
National Seashore

An unknown Pseudomonas sp. most closely related to Pseudomonas ficuserectae and Pseudomonas protegens was isolated from the rhizospheres of wild cranberry plants in the Cape Cod National Seashore, in the United States.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of a Vibrio harveyi Strain Associated with Vibriosis in Pacific White Shrimp (Litopenaeus vannamei)

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Emille Moreno ◽  
Marci Parks ◽  
Lee J. Pinnell ◽  
James J. Tallman ◽  
Jeffrey W. Turner
Keyword(s):  
Genome Sequence ◽  
Litopenaeus Vannamei ◽  
Vibrio Harveyi ◽  
Draft Genome ◽  
Penaeid Shrimp ◽  
Pacific White Shrimp ◽  
Draft Genome Sequence ◽  
White Shrimp ◽  
Content Type ◽  
Future Studies

ABSTRACT Vibrio harveyi is a Gram-negative bacterium associated with vibriosis in penaeid shrimp. Here, we report the draft genome sequence of a V. harveyi strain isolated from Pacific white shrimp (Litopenaeus vannamei) during a vibriosis outbreak. The availability of this genome will aid future studies of vibriosis in shrimp aquaculture.

scholarly journals Draft Genome Sequence of Pantoea sp. Strain A4, a Rafflesia-Associated Bacterium That ProducesN-Acylhomoserine Lactones as Quorum-Sensing Molecules

2012 ◽  
Vol 194 (23) ◽  
pp. 6610-6610 ◽  
Author(s):  
Kar-Wai Hong ◽  
Han Ming Gan ◽  
Siew-Moon Low ◽  
Patrick Kok Yuen Lee ◽  
Yee-Meng Chong ◽  
...  
Keyword(s):  
Quorum Sensing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
First Time

ABSTRACTPantoeasp. strain A4 is a Gram-negative bacterium isolated from theRafflesiaflower. We present here, for the first time, the genome sequence ofRafflesia-associatedPantoeasp. strain A4, which exhibited quorum-sensing activity.

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