scholarly journals Omics-Inferred Partitioning and Expression of Diverse Biogeochemical Functions in a Low-O 2 Cyanobacterial Mat Community

mSystems ◽  
2021 ◽  
Author(s):  
Sharon L. Grim ◽  
Alexander A. Voorhies ◽  
Bopaiah A. Biddanda ◽  
Sunit Jain ◽  
Stephen C. Nold ◽  
...  
Keyword(s):  
Natural History ◽  
Chemical Evolution ◽  
Bacterial Species ◽  
Low Oxygen ◽  
Cyanobacterial Mats ◽  
Geological Time ◽  
Cyanobacterial Mat ◽  
Oxygen Conditions

Cyanobacterial mats are dense communities of microorganisms that contain photosynthetic cyanobacteria along with a host of other bacterial species that play important yet still poorly understood roles in this ecosystem. Although such cyanobacterial mats were critical agents of Earth’s biological and chemical evolution through geological time, little is known about how they function under the low-oxygen conditions that characterized most of their natural history.

scholarly journals Emergent Bacteria in Cystic Fibrosis:In VitroBiofilm Formation and Resilience under Variable Oxygen Conditions

2014 ◽  
Vol 2014 ◽  
pp. 1-7 ◽  
Author(s):  
Susana P. Lopes ◽  
Nuno F. Azevedo ◽  
Maria O. Pereira
Keyword(s):  
Bacterial Species ◽  
Low Oxygen ◽  
Antibiotic Susceptibilities ◽  
Oxygen Conditions ◽  
Mode Of Life ◽  
Lung Infections ◽  
Biofilm Development ◽  
The Impact

Concurrent to conventional bacterial pathogens, unusual microbes are emerging from cystic fibrosis (CF) airways. Nonetheless, little is known about the contribution of these newly microbes to the resilience of CF-associated biofilms, particularly under variable-oxygen concentrations that are known to occurin vivoin the mucus of CF patients. Two CF-emergent bacterial species,Inquilinus limosusandDolosigranulum pigrum, and the major pathogenPseudomonas aeruginosawere studied in terms of biofilm development and antibiotic susceptibilities underin vitroatmospheres with different oxygen availabilities. All species were able to developin vitrobiofilms under different oxygen-available environments, withD. pigrumaccumulating high amounts of biomass and respiratory activities. When established, biofilms were of difficult eradication, with antibiotics losing their effectiveness in comparison with the corresponding planktonic populations. Surprisingly, biofilms of each emergent organism displayed multidrug resistance under aerobic environments, enduring even in low-oxygen atmospheres. This study suggests a potential prospect on the impact of nonconventional organismsI. limosusandD. pigrumon CF lung infections, demonstrating capacity to adapt to biofilm mode of life under restricted-oxygen atmospheres resembling CF airways, which may ultimately endanger the efficacy of currently used antibiotic regimens.

scholarly journals Identification and Functional Analysis of ThADH1 and ThADH4 Genes Involved in Tolerance to Waterlogging Stress in Taxodium hybrid ‘Zhongshanshan 406’

Genes ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 225
Author(s):  
Lei Xuan ◽  
Jianfeng Hua ◽  
Fan Zhang ◽  
Zhiquan Wang ◽  
Xiaoxiao Pei ◽  
...  
Keyword(s):  
Ethanol Metabolism ◽  
Flooding Tolerance ◽  
Transcriptome Data ◽  
Low Oxygen ◽  
Anaerobic Conditions ◽  
Waterlogging Tolerance ◽  
Waterlogging Stress ◽  
Adh Genes ◽  
Oxygen Conditions ◽  
Stems And Leaves

The Taxodium hybrid ‘Zhongshanshan 406’ (T. hybrid ‘Zhongshanshan 406’) [Taxodium mucronatum Tenore × Taxodium distichum (L.). Rich] has an outstanding advantage in flooding tolerance and thus has been widely used in wetland afforestation in China. Alcohol dehydrogenase genes (ADHs) played key roles in ethanol metabolism to maintain energy supply for plants in low-oxygen conditions. Two ADH genes were isolated and characterized—ThADH1 and ThADH4 (GenBank ID: AWL83216 and AWL83217—basing on the transcriptome data of T. hybrid ‘Zhongshanshan 406’ grown under waterlogging stress. Then the functions of these two genes were investigated through transient expression and overexpression. The results showed that the ThADH1 and ThADH4 proteins both fall under ADH III subfamily. ThADH1 was localized in the cytoplasm and nucleus, whereas ThADH4 was only localized in the cytoplasm. The expression of the two genes was stimulated by waterlogging and the expression level in roots was significantly higher than those in stems and leaves. The respective overexpression of ThADH1 and ThADH4 in Populus caused the opposite phenotype, while waterlogging tolerance of the two transgenic Populus significantly improved. Collectively, these results indicated that genes ThADH1 and ThADH4 were involved in the tolerance and adaptation to anaerobic conditions in T. hybrid ‘Zhongshanshan 406’.

Pilot-scale production of cloudy juice from low-quality pear fruit under low-oxygen conditions

2015 ◽  
Vol 173 ◽  
pp. 827-837 ◽  
Author(s):  
Domien De Paepe ◽  
Katleen Coudijzer ◽  
Bart Noten ◽  
Dirk Valkenborg ◽  
Kelly Servaes ◽  
...  
Keyword(s):  
Pilot Scale ◽  
Scale Production ◽  
Low Oxygen ◽  
Pear Fruit ◽  
Pilot Scale Production ◽  
Oxygen Conditions

scholarly journals The radiosensitising effect of gemcitabine and its main metabolite dFdU under low oxygen conditions is in vitro not dependent on functional HIF-1 protein

BMC Cancer ◽  
2014 ◽  
Vol 14 (1) ◽  
Author(s):  
An Wouters ◽  
Bea Pauwels ◽  
Natalie Burrows ◽  
Marc Baay ◽  
Vanessa Deschoolmeester ◽  
...  
Keyword(s):  
Low Oxygen ◽  
Main Metabolite ◽  
Oxygen Conditions

scholarly journals Do low oxygen environments facilitate marine invasions? Relative tolerance of native and invasive species to low oxygen conditions

2017 ◽  
Vol 23 (6) ◽  
pp. 2321-2330 ◽  
Author(s):  
Marcelo E. Lagos ◽  
Diego R. Barneche ◽  
Craig R. White ◽  
Dustin J. Marshall
Keyword(s):  
Invasive Species ◽  
Low Oxygen ◽  
Marine Invasions ◽  
Relative Tolerance ◽  
Oxygen Conditions

Benthic foraminiferal response to relative sea-level changes in the Maastrichtian–Danian succession at the Dakhla Oasis, Western Desert, Egypt

2016 ◽  
Vol 155 (3) ◽  
pp. 729-746 ◽  
Author(s):  
SHERIF FAROUK ◽  
SREEPAT JAIN
Keyword(s):  
Sea Level ◽  
Western Desert ◽  
Level Curve ◽  
Sea Level Changes ◽  
Low Oxygen ◽  
Benthic Environment ◽  
Oxygen Conditions ◽  
Early Paleocene ◽  
Dakhla Oasis ◽  
Regional Tectonics

AbstractThe Maastrichtian–Danian benthic foraminiferal diversity and assemblages through sequence stratigraphy were studied at Dakhla Oasis, Egypt. Benthic foraminifera numbers (BFN), high-flux species and characteristic benthic foraminiferal species and genera distribution are also incorporated to assess palaeobathymetry, palaeoenvironment and palaeoproductivity. All these proxies are then taken together to construct a sea-level curve and interpreted in terms of regional tectonics, climate and eustasy. Data suggest a remarkably highly equitable benthic environment deposited in a brackish littoral and/or marsh setting with moderate (?) to low oxygen conditions and reduced salinity (oligotrophic), possibly due to increased precipitation and terrestrial runoff. The interrupted dominance of calcareous forms and high-organic-flux species suggests occasional marine incursions and high palaeoproductivity, due to local upwelling. The inferred sea-level curve replicates the global eustatic curve and suggests that the curve is more influenced by the prevailing climate and global eustasy rather than by regional tectonics. The post-Cretaceous–Palaeogene boundary displays improvement in the environment in terms of diversity and number of species and specimens, with a marked reduction in the abundance of high-organic-flux species during early Paleocene (Danian) time, indicating a shift from a more mesotrophic open marine environment to much reduced oligotrophic conditions.

scholarly journals Oxygenated Mesoproterozoic lake revealed through magnetic mineralogy

2018 ◽  
Vol 115 (51) ◽  
pp. 12938-12943 ◽  
Author(s):  
Sarah P. Slotznick ◽  
Nicholas L. Swanson-Hysell ◽  
Erik A. Sperling
Keyword(s):  
Iron Oxide ◽  
Intermediate Water ◽  
Low Oxygen ◽  
Mineral Assemblages ◽  
Oxygen Conditions ◽  
Terrestrial Environments ◽  
Anoxic Environment ◽  
Nuanced Understanding ◽  
Textural Analyses ◽  
Shed Light

Terrestrial environments have been suggested as an oxic haven for eukaryotic life and diversification during portions of the Proterozoic Eon when the ocean was dominantly anoxic. However, iron speciation and Fe/Al data from the ca. 1.1-billion-year-old Nonesuch Formation, deposited in a large lake and bearing a diverse assemblage of early eukaryotes, are interpreted to indicate persistently anoxic conditions. To shed light on these distinct hypotheses, we analyzed two drill cores spanning the transgression into the lake and its subsequent shallowing. While the proportion of highly reactive to total iron (FeHR/FeT) is consistent through the sediments and typically in the range taken to be equivocal between anoxic and oxic conditions, magnetic experiments and petrographic data reveal that iron exists in three distinct mineral assemblages resulting from an oxycline. In the deepest waters, reductive dissolution of iron oxides records an anoxic environment. However, the remainder of the sedimentary succession has iron oxide assemblages indicative of an oxygenated environment. At intermediate water depths, a mixed-phase facies with hematite and magnetite indicates low oxygen conditions. In the shallowest waters of the lake, nearly every iron oxide has been oxidized to its most oxidized form, hematite. Combining magnetics and textural analyses results in a more nuanced understanding of ambiguous geochemical signals and indicates that for much of its temporal duration, and throughout much of its water column, there was oxygen in the waters of Paleolake Nonesuch.

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