Detection of Handling Mortality and its Effects on Jolly–Seber Estimates for Mark–Recapture Experiments

1987 ◽  
Vol 44 (S1) ◽  
pp. s64-s73 ◽  
Author(s):  
A. N. Arnason ◽  
K. H. Mills

Handling mortality occurs in mark–recapture experiments if animals handled and released in a given sample have a higher mortality rate than animals that were alive but not sampled. This violates the assumption of equal survival required for forming the Jolly–Seber estimates of population abundance, survival, and recruitment. We show that handling mortality can produce very large biases in these estimates, and we develop a test to detect it. We investigate the power of this test and find that quite large biases can be produced at handling mortality rates that are too low to be detected. We recommend methods to prevent handling mortality from occurring in fish sampling experiments and methods to reduce bias in the estimates. The test and the bias corrections are applied to mark–recapture data for a lake whitefish (Coregonus clupeaformis) population and to data from simulated mark–recapture experiments. Because of unavoidable inadequacies in the detection and reduction of bias due to handling effects, we strongly recommend that fisheries biologists take great care to prevent its occurrence.

1981 ◽  
Vol 38 (9) ◽  
pp. 1077-1095 ◽  
Author(s):  
A. N. Arnason ◽  
K. H. Mills

A crucial, though often ignored, assumption of mark–recapture experiments is that animals do not lose their marks (tags). We present results of theoretical analyses of the effects of tag loss on estimates of population size ([Formula: see text]), survival ([Formula: see text]), births or new entries ([Formula: see text]), and on their standard errors (SE()), for the Jolly–Seber (full) model allowing birth and death. We show that[Formula: see text], SE([Formula: see text]) and SE([Formula: see text]) are not biased by tag loss, while [Formula: see text], [Formula: see text], and SE([Formula: see text]) are biased. A similar analysis for the Jolly–Seber (death-only) model where births are known not to occur shows that [Formula: see text], [Formula: see text], and SE([Formula: see text]) are strongly biased by tag loss while only SE([Formula: see text]) is unbiased. Moreover, for both models, tag loss causes a loss in precision in all estimates (i.e. an increase in the standard error of the estimate, leading to wider confidence intervals). Throughout the paper, we assume that tag loss is homogeneous among animals; that is, it is the same for all marked animals regardless of age, sex, or tag-retention time, although the rate per unit time may change over time (e.g. over years or seasons within years).We develop analytic formulae for both models that allow calculation of the expected bias and SE in an estimate at given tag loss rates in a population of given size, subject to specified sampling, survival, and birth rates. The analytic formulae are large sample approximations, but are shown, by simulations, to be adequate provided marked captures (mi) and subsequent recoveries (ri) are no lower than around 5.We discuss how these calculations can be used in practical situations to plan experiments that will yield adequately precise estimates and to determine whether corrections to compensate for tag loss are necessary. In general, corrections are unnecessary if bias is slight or precision is poor. Otherwise, they should be corrected. The biased estimates from the full model ([Formula: see text], SE([Formula: see text]), and [Formula: see text]) are correctable only if an estimate of tag-loss rate is available. The death-only model estimates can all be corrected to eliminate bias due to tag loss both with and without knowledge of the tag-loss, rate. Knowledge of the tag-loss rate will usually give higher precision of the corrected estimates over those corrected without knowing the tag-loss rate.The Robson–Regier method of estimating tag loss can be used in experiments with double tagging where one tag is a permanent batch mark and where all recaptured animals are removed. We extend this method to allow for the multiple mark–recapture case where recaptures may be returned to the population. An example of the methods of estimating tag loss and then correcting the death-only model estimates is presented for some lake whitefish (Coregonus clupeaformis) data. Without the corrections, the estimates for these data would have been in serious error. The example provides some evidence that the correction may work even when the tag loss is not homogeneous across all animals.Recommendations are presented for planning mark–recapture experiments to minimize the problems created by tag loss.Key words: marking methods, tag loss, bias of estimates, capture–recapture, Jolly–Seber estimates, population estimates, survival, mortality, lake whitefish


1983 ◽  
Vol 40 (10) ◽  
pp. 1556-1567 ◽  
Author(s):  
B. A. Henderson ◽  
J. J. Collins ◽  
J. A. Reckahn

A population of lake whitefish (Coregonus clupeaformis) in the waters off eastern Manitoulin Island in Lake Huron was sampled from 1950 to 1982 by an experimental pound net in the outer basin of South Bay. Year-class strength increased markedly from 1947 to 1977; the increase began with the decline of the 1943 year-class. The fork length attained by age 1–3 fish decreased during the study, but no trend was apparent for older fish. Natural mortality of year-classes varied considerably, and was probably related to the abundance of lamprey. The annual exploitation rate increased from 1 to 37% between 1960 and 1977. Year-class strength was not correlated with the thermal regime during spawning and hatching. Recruitment was a function of parental stock size, and there was evidence that survival from the egg to juvenile stage was inversely correlated with parental stock size. Instantaneous growth rates (G) during the 2nd year of growth were inversely related to year-class strength. Growth (G) in the 1st year was positively correlated with estimated surface water temperatures. The sizes attained by ages 2 and 3 were inversely related to total population abundance. Catchability coefficients in 144-mm-mesh gill nets were inversely related to estimated population sizes. An intrinsic mechanism of population regulation is proposed whereby recruitment is a function of parental stock size, juvenile survival is inversely related to stock size, and growth is inversely correlated with population abundance.


1987 ◽  
Vol 44 (S2) ◽  
pp. s129-s135
Author(s):  
John J. Collins

During 1979–81, Lake Huron fishermen changed from using 36-mesh monofilament nets to deeper (50-mesh) nets in the commercial fishery for lake whitefish (Coregonus clupeaformis). Simultaneous catch comparisons between the two gears showed that overall, deep nets were 1.7 times more efficient (but varied seasonally) for whitefish. The increase in efficiency exceeded that expected from the increase in area of the deeper nets. Simulation modeling demonstrates that the expression of enhanced catchability of deep nets is inversely proportional to the intensity of the fishery and thus total mortality rates (Z). Further, the temporal distribution of yield to the fishery would be advanced within the fishing period. This most recent change in catchability has introduced further bias in commercial catch and effort statistics.


2005 ◽  
Vol 8 (2) ◽  
pp. 89 ◽  
Author(s):  
Kevin M. Harris ◽  
Avinash Reddy ◽  
Dorothee Aepplii ◽  
Betsy Wilson ◽  
Robert W. Emery

Background: Patients undergoing on-pump coronary artery bypass surgery (CAB) with coexistent moderate ischemic mitral regurgitation (IMR) have a significant mortality rate compared to patients without MR. The mortality rate is elevated both perioperatively (0%-12% mortality), as well as over a 1- and 2-year postoperative period (15%-25%). It is thought that some patients are best served by off-pump CAB (OPCAB); however, outcomes have not been reported for such patients with coexistent moderate IMR. Methods: We reviewed the independent database of patients undergoing OPCAB between 1995 and 2002 to find 989 patients, 17 (1.7%) of whom had moderate or moderately severe MR. Patients were contacted and clinical and echocardiographic data were obtained. Results: The patient group consisted of 11 men and 6 women (age, 65 15 years). The study group had a PA pressure of 52 14, creatinine of 1.6 0.7, and left ventricular ejection fraction of 43 18. Nine patients (53%) had advanced New York Heart Association (class III-IV) heart failure. Mortality rates perioperatively and at 1, 2, and 3 years were 0%, 6.25% (1/16), 12.5% (2/16), and 38% (4/8), respectively. At the time of this report, no patient had returned for a reparative procedure. Conclusion: In patients felt to be best served by OPCAB with ischemic MR, operative and intermediate mortality rates are remarkably similar to those previously reported for on-pump series. These data underscore the continued need to understand which patients undergoing CAB require mitral valve problems to be addressed at the time of surgery.


2021 ◽  
Vol 31 (1) ◽  
Author(s):  
Alime Bayindir Erol ◽  
Oktay Erdoğan ◽  
İsmail Karaca

Abstract Background In this study, commercial bioinsecticides including entomopathogenic fungi, Beauveria bassiana, Metarhizium anisopliae, and Verticillium lecanii, and Spinetoram active ingredient insecticide were evaluated against the tomato leaf miner, Tuta absoluta (Meyrick, 1917) (Lepidoptera: Gelechiidae) larvae. Main body The active ingredients were prepared at the recommended concentrations under laboratory conditions and applied to the 2nd instar larvae of T. absoluta by spraying with a hand sprayer. On the 1st, 3rd, 5th, and 7th days of the application, evaluations were made by counting survived individuals. The findings showed that the highest mortality rates were detected in the case of Spinetoram with 56, 60, 88, and 100% on all counting days of the experiments, respectively. The highest mortality rate among bioinsecticides was recorded for M. anisopliae, with 87% mortality on the 7th day of application. Short conclusion As a result, Spinetoram was found the most effective insecticide when applied to T. absoluta, followed by M. anisopliae.


Author(s):  
Macarena Valdés Salgado ◽  
Pamela Smith ◽  
Mariel Opazo ◽  
Nicolás Huneeus

Background: Several countries have documented the relationship between long-term exposure to air pollutants and epidemiological indicators of the COVID-19 pandemic, such as incidence and mortality. This study aims to explore the association between air pollutants, such as PM2.5 and PM10, and the incidence and mortality rates of COVID-19 during 2020. Methods: The incidence and mortality rates were estimated using the COVID-19 cases and deaths from the Chilean Ministry of Science, and the population size was obtained from the Chilean Institute of Statistics. A chemistry transport model was used to estimate the annual mean surface concentration of PM2.5 and PM10 in a period before the current pandemic. Negative binomial regressions were used to associate the epidemiological information with pollutant concentrations while considering demographic and social confounders. Results: For each microgram per cubic meter, the incidence rate increased by 1.3% regarding PM2.5 and 0.9% regarding PM10. There was no statistically significant relationship between the COVID-19 mortality rate and PM2.5 or PM10. Conclusions: The adjusted regression models showed that the COVID-19 incidence rate was significantly associated with chronic exposure to PM2.5 and PM10, even after adjusting for other variables.


2021 ◽  
pp. 1-7
Author(s):  
Julia Velz ◽  
Marian Christoph Neidert ◽  
Yang Yang ◽  
Kevin Akeret ◽  
Peter Nakaji ◽  
...  

<b><i>Objective:</i></b> Brainstem cavernous malformations (BSCM)-associated mortality has been reported up to 20% in patients managed conservatively, whereas postoperative mortality rates range from 0 to 1.9%. Our aim was to analyze the actual risk and causes of BSCM-associated mortality in patients managed conservatively and surgically based on our own patient cohort and a systematic literature review. <b><i>Methods:</i></b> Observational, retrospective single-center study encompassing all patients with BSCM that presented to our institution between 2006 and 2018. In addition, a systematic review was performed on all studies encompassing patients with BSCM managed conservatively and surgically. <b><i>Results:</i></b> Of 118 patients, 54 were treated conservatively (961.0 person years follow-up in total). No BSCM-associated mortality was observed in our conservatively as well as surgically managed patient cohort. Our systematic literature review and analysis revealed an overall BSCM-associated mortality rate of 2.3% (95% CI: 1.6–3.3) in 22 studies comprising 1,251 patients managed conservatively and of 1.3% (95% CI: 0.9–1.7) in 99 studies comprising 3,275 patients with BSCM treated surgically. <b><i>Conclusion:</i></b> The BSCM-associated mortality rate in patients managed conservatively is almost as low as in patients treated surgically and much lower than in frequently cited reports, most probably due to the good selection nowadays in regard to surgery.


1995 ◽  
Vol 10 (1) ◽  
pp. 19-23 ◽  
Author(s):  
Michael J. VanRooyen ◽  
Edward P. Sloan ◽  
John A. Barrett ◽  
Robert F. Smith ◽  
Hernan M. Reyes

AbstractHypothesis:Pediatric mortality is predicted by age, presence of head trauma, head trauma with a low Glasgow Coma Scale (GCS) score, a low Pediatric Trauma Score (PTS), and transport directly to a pediatric trauma center.Population:Studied were 1,429 patients younger than 16 years old admitted to or declared dead on arrival (DOA) in a pediatric trauma center from January through October, 1988. The trauma system, which served 3-million persons, included six pediatric trauma centers.Methods:Data were obtained by a retrospective review of summary statistics provided to the Chicago Department of Health by the pediatric trauma centers.Results:Overall mortality was 4.8% (68 of 1429); 32 of the patients who died (47.1%) were DOA. The in-hospital mortality rate was 2.6%. Head injury was the principal diagnosis in 46.2% of admissions and was a factor in 72.2% of hospital deaths. The mortality rate was 20.3% in children with a GCS≤10 and 0.4% when the GCS was >10 (odds ratio [OR] = 67.0, 95% CI = 15.0–417.4). When the PTS was ≤ 5, mortality was 25.6%; with a PTS > 5, the mortality was 0.2% (OR = 420.7, 95% CI = 99.3–2,520). Although transfers to a pediatric trauma center accounted for 73.6% of admissions, direct field triage to a pediatric trauma center was associated with a 3.2 times greater mortality risk (95% CI = 1.58–6.59). Mortality rates were equal for all age groups. Pediatric trauma center volume did not influence mortality rates.Conclusions:Head injury and death occur in all age groups, suggesting the need for broad prevention strategies. Specific GCS and PTS values that predict mortality can be used in emergency medical services (EMS) triage protocols. Although the high proportion of transfers mandates systemwide transfer protocols, the lower mortality in these patients suggests appropriate EMS field triage. These factors should be considered as states develop pediatric trauma systems.


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