HORDEIN VARIATION IN WILD (HORDEUM SPONTANEUM) AND CULTIVATED (H. VULGARE) BARLEY

1979 ◽  
Vol 21 (3) ◽  
pp. 391-404 ◽  
Author(s):  
Hans Doll ◽  
A. H. D. Brown
Keyword(s):  
Linkage Disequilibrium ◽  
Wild Species ◽  
Storage Protein ◽  
Natural Populations ◽  
Hordeum Spontaneum ◽  
Allele Frequencies ◽  
Evolutionary Processes ◽  
Highly Correlated ◽  
The Individual ◽  
Allozyme Loci

The storage protein hordein contains two major groups of polypeptides which are highly polymorphic in barley, and in its evolutionary progenitor Hordeum spontaneum Koch. Crosses between the two species showed that the complex electrophoretic phenotypes within the two groups of polypeptides are governed by codominant alleles at two corresponding loci, Hor-1 and Hor-2, which are moderately linked (11% ± 2). In natural populations of the wild species, the two complex hordein loci were much more polymorphic than the allozyme loci. Furthermore, the variation at these two loci was highly correlated so that individuals differ from one another at both loci much more frequently than expected from the allele frequencies at the individual loci. Considerable hordein variation was also present in Composite Cross XXI, and there was evidence of reassortment of patterns by the seventeenth generation. Thus the complex hordein loci, with their extreme diversity and linkage disequilibrium, are ideal markers for monitoring evolutionary processes in both natural, or composite cross populations.

Estimation of mating system parameters in two Italian natural populations of Fagussylvatica

1996 ◽  
Vol 26 (7) ◽  
pp. 1187-1192 ◽  
Author(s):  
Patrizia Rossi ◽  
Giovanni Giuseppe Vendramin ◽  
Raffaello Giannini
Keyword(s):  
Mating System ◽  
Natural Populations ◽  
Female Parent ◽  
European Beech ◽  
Allele Frequencies ◽  
Mixed Mating ◽  
System Parameters ◽  
Fixation Indices ◽  
Mixed Mating Model ◽  
Allozyme Loci

Mating system parameters were estimated in two Italian natural populations of European beech (Fagussylvatica L.) using a mixed mating model and considering seven allozyme loci (Idh-A, Lap-A, Mdh-B, Pgd-A, Pgd-B, Pgd-C, Skd-A). High values of multilocus estimates of the outcrossing rate were found in both populations, ranging from 94 to 98%. Comparison of single- and multi-locus estimates of outcrossing rates seems to indicate the presence of consanguineous matings, probably because the populations are substructured. This hypothesis seems to be confirmed by the presence of a heterogeneity of the pollen allele frequencies across female parent trees and by the significant coefficient of the regression of pollen allele frequencies on ovule genotype. Variation in the fixation indices in different life-cycle phases was observed, indicating possible presence of selective processes between seed set and sexual maturity. Possible explanations of these results are presented.

scholarly journals Analysis of linkage disequilibria between allozyme loci in natural populations of Drosophila melanogaster

1978 ◽  
Vol 32 (3) ◽  
pp. 215-229 ◽  
Author(s):  
Charles H. Langley ◽  
Diana B. Smith ◽  
F. M. Johnson
Keyword(s):  
Drosophila Melanogaster ◽  
Linkage Disequilibrium ◽  
Natural Population ◽  
Analysis Of Variance ◽  
Natural Populations ◽  
Correlation Coefficients ◽  
Absolute Value ◽  
Linkage Disequilibria ◽  
Enzyme Loci ◽  
Allozyme Loci

SUMMARYLinkage disequilibria between pairs of 8 polymorphic enzyme loci (αGpdh, Mdh, Adh, Est-6, Pgm, Odh, Est-C and Acph) in some 100 natural population samples of Drosophila melanogaster were examined. The estimates of linkage disequilibrium were made from zygotic frequencies. The magnitude of linkage disequilibria are small and similar to those in previous reports. Variation in linkage disequilibrium among related subpopulations was analysed by analysis of variance of the correlation coefficients. Despite the small absolute value of linkage disequilibrium there is a suggestion of a correlation among related subpopulations. The magnitude of linkage disequilibrium was observed to be positively correlated with linkage. Two cage populations were observed to demonstrate large amounts of linkage disequilibrium between closely linked loci in contrast to the situation in natural populations. This is attributable to the finite sizes of these cage populations.

scholarly journals Stable linkage disequilibrium owing to sexual antagonism

2010 ◽  
Vol 278 (1707) ◽  
pp. 855-862 ◽  
Author(s):  
Francisco Úbeda ◽  
David Haig ◽  
Manus M. Patten
Keyword(s):  
Linkage Disequilibrium ◽  
Genomic Structure ◽  
Natural Populations ◽  
Allele Frequencies ◽  
Population Subdivision ◽  
Sexual Antagonism ◽  
Antagonistic Selection ◽  
Sexually Antagonistic Selection ◽  
Males And Females ◽  
Frequent Observation

Linkage disequilibrium (LD) is an association between genetic loci that is typically transient. Here, we identify a previously overlooked cause of stable LD that may be pervasive: sexual antagonism. This form of selection produces unequal allele frequencies in males and females each generation, which upon admixture at fertilization give rise to an excess of haplotypes that couple male-beneficial with male-beneficial and female-beneficial with female-beneficial alleles. Under sexual antagonism, LD is obtained for all recombination frequencies in the absence of epistasis. The extent of LD is highest at low recombination and for stronger selection. We provide a partition of the total LD into distinct components and compare our result for sexual antagonism with Li and Nei's model of LD owing to population subdivision. Given the frequent observation of sexually antagonistic selection in natural populations and the number of traits that are often involved, these results suggest a major contribution of sexual antagonism to genomic structure.

scholarly journals FREQUENCY DISTRIBUTION OF ESTERASE-5 ALLELES IN TWO POPULATIONS OF DROSOPHILA PSEUDOOBSCURA

Genetics ◽  
1983 ◽  
Vol 105 (1) ◽  
pp. 135-155
Author(s):  
Tim Perri Keith
Keyword(s):  
Sex Ratio ◽  
Statistical Tests ◽  
Large Population ◽  
Natural Populations ◽  
Purifying Selection ◽  
Allele Frequencies ◽  
Drosophila Pseudoobscura ◽  
Frequency Distributions ◽  
Neutral Models ◽  
The Individual

ABSTRACT Statistical tests comparing allele frequencies in natural populations with those predicted by various theories of genic variation depend critically on the accurate enumeration of alleles. This study used a series of five sequential electrophoretic conditions to characterize the allele frequency distributions of esterase-5 in two large population samples of Drosophila pseudoobscura from California. In Standard chromosome lines 12 electromorphs were discriminated using a single electrophoretic condition. When four additional criteria were used, the number of electromorphs increased to 41, 33 in one population and 22 in the other. Both populations had the same two alleles in high frequency, with other alleles present in frequencies of 6% or less. Although each population had a number of unique alleles, a χ2 contingency test demonstrated no significant genetic divergence between them. A statistical comparison of allele frequencies in both populations with that predicted by neutral models suggests that the individual and combined distributions deviate from neutrality in the direction of purifying selection.—Sex-Ratio chromosomes differed markedly from Standard chromosomes in both allelic content and diversity. In 32 Sex-Ratio chromosomes from one population only three alleles were found, all of which were detected under the initial "standard" electrophoretic conditions. Moreover, none of these alleles was found in the Standard chromosome lines.

scholarly journals LINKAGE DISEQUILIBRIUM IN NATURAL POPULATIONS OF DROSOPHILA MELANOGASTER. SEASONAL VARIATION

Genetics ◽  
1977 ◽  
Vol 86 (2) ◽  
pp. 447-454
Author(s):  
Charles H Langley ◽  
Kazuko Ito ◽  
Robert A Voelker
Keyword(s):  
Drosophila Melanogaster ◽  
Seasonal Variation ◽  
Linkage Disequilibrium ◽  
Natural Population ◽  
Natural Populations ◽  
The Other ◽  
Allozyme Loci

ABSTRACT Linkage disequilibrium among ten polymorphic allozyme loci and polymorphic inversions on chromosomes 2 and 3 in a natural population of Drosophila melanogaster was examined early and late in the annual season. Similar to previous studies, little linkage disequilibrium was observed among allozymes. The two significant cases that were observed in the first sample behaved in a contradictory way. One declined much more rapidly than expected due simply to recombination; the other declined slowly as expected. There was little change in allozyme or inversion frequencies during the season.

scholarly journals Linkage Disequilibrium Between Allozymes in Natural Populations of Lodgepole Pine

Genetics ◽  
1987 ◽  
Vol 115 (2) ◽  
pp. 341-352
Author(s):  
B K Epperson ◽  
R W Allard
Keyword(s):  
Linkage Disequilibrium ◽  
Pinus Contorta ◽  
Lodgepole Pine ◽  
Random Mating ◽  
Natural Populations ◽  
Population Substructure ◽  
Population Subdivision ◽  
Chi Square ◽  
Pairwise Linkage Disequilibrium ◽  
Allozyme Loci

ABSTRACT Pairwise linkage disequilibrium values (D) were estimated for 14 allozyme loci in two natural populations of lodgepole pine (Pinus contorta ssp. latifolia). Maternal multilocus genotypes were inferred from samples of (haploid) megagametophytic seed-endosperms. Coupling/repulsion double heterozygotes were distinguished for closely linked pairs of loci. Assays of seven of the loci in seed embryos allowed estimates of D for these loci in the outcross pollen pool (estimates of outcrossing rates indicate no significant departures from random mating in either population). No disequilibrium was observed between unlinked loci in either maternal genotypes or outcross pollen. However, significant disequilibrium was observed within and between gametes for some allelic combinations of four tightly linked loci; the assumption of random association of gamete types within individuals is thus invalid for some loci in lodgepole pine. Possible causes of the observed D were examined using the noncentrality parameter of the general noncentral chi square distribution. We concluded, from estimates of population size, linkage and measurements of population substructure, that neither drift nor population subdivision was responsible for the significant values of D which were observed and that epistatic selection was the most likely cause of the disequilibrium observed.

scholarly journals NULL ALLELE FREQUENCIES AT ALLOZYME LOCI IN NATURAL POPULATIONS OF DROSOPHILA MELANOGASTER

Genetics ◽  
1981 ◽  
Vol 99 (1) ◽  
pp. 151-156
Author(s):  
Charles H Langley ◽  
Robert A Voelker ◽  
Andrew J Leigh Brown ◽  
Seido Ohnishi ◽  
Barbara Dickson ◽  
...  
Keyword(s):  
North Carolina ◽  
Drosophila Melanogaster ◽  
Null Allele ◽  
Natural Populations ◽  
Allele Frequencies ◽  
Null Alleles ◽  
Carolina Population ◽  
The Mean ◽  
Allozyme Loci ◽  
Two Populations

ABSTRACT We have sampled a London population of Drosophila melanogaster for null alleles at twenty-five allozyme loci. The same loci and biochemical techniques were used as in our previous survey of a North Carolina population (Voelker et al. 1980). This second survey is completely concordant with the first. No nulls were detected among the five X-linked loci. The mean frequency of nulls at the twenty autosomal loci was 0.0023. Although there is significant interlocus heterogeneity, the two populations appear to have the same frequencies at each locus. This suggests that null alleles at these allozyme loci are in mutation-selection balance, and we estimate the average heterozygous effect of an allozyme null to be 0.0015. Consideration of allozyme null-allele frequencies, the effects of allozyme null alleles on viability and fertility and the generally greater amount of genetic variability at allozyme loci determined by electrophoresis lead us to doubt the validity of generalizing from allozyme data to the whole genome.

Allozyme differentiation among populations, stands, and cohorts in Monterey pine

1986 ◽  
Vol 16 (6) ◽  
pp. 1155-1164 ◽  
Author(s):  
Martha E. Plessas ◽  
Steven H. Strauss
Keyword(s):  
Gene Diversity ◽  
Random Mating ◽  
Natural Populations ◽  
Morphological Characters ◽  
Allele Frequencies ◽  
Monterey Pine ◽  
Fixation Indices ◽  
The One ◽  
Old Trees ◽  
Allozyme Loci

Four- to six-year-old trees were sampled from 9 to 10 stands in each of three natural populations of Monterey pine (Pinusradiata D. Don) and studied for genetic diversity at 37 allozyme loci. Among loci, Nei's gene diversity ranged from 73 to 100% within stands, 0 to 10% between stands within populations, and 0 to 27% between populations; average values were 94.9, 1.6, and 3.5%, respectively. F-statistic analyses (B. S. Weir and C. C. Cockerham. 1984. Evolution (Lawrence, Kans.), 38: 1358–1370) indicated higher levels of stand and population differentiation than did Nei's diversity statistics: 2.6 ± 0.7 and 6.2 ± 2.6%, respectively. Homozygotes were significantly in excess relative to expectations under random mating (FIS = 0.065). Most loci showed highly significant variation of allele frequencies among populations; Nei's genetic distance averaged 0.014. Genetic and geographic distances among stands were correlated only at Año Nuevo. Introgression of genes from knobcone pine (Pinusattenuata Lemm.) was evident in the one stand where the species were sympatric. Contrary to inferences from growth and morphological characters, allozyme frequencies and other biochemical characters suggest that the Año Nuevo population diverged prior to Cambria and Monterey. Differentiation among three cohorts was studied at 10 loci. Allele frequencies varied nonsignificantly between cohorts; mean fixation indices, however, decreased monotonically with cohort age, from 0.081 in embryos to 0.038 in 5-year-old trees to −0.119 in 14- to 17-year-old trees. Selection for the more outbred progeny was the outcome of stand development.

scholarly journals LINKAGE DISEQUILIBRIUM IN NATURAL POPULATIONS OF DROSOPHILA MELANOGASTER

Genetics ◽  
1974 ◽  
Vol 78 (3) ◽  
pp. 921-936
Author(s):  
Charles H Langley ◽  
Yoshiko N Tobari ◽  
Ken-Ichi Kojima
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Variation ◽  
Linkage Disequilibrium ◽  
Natural Populations ◽  
Chromosomal Gene ◽  
Gene Frequencies ◽  
Linkage Disequilibria ◽  
Allozyme Loci ◽  
Two Populations ◽  
Stable Populations

ABSTRACT Two large, stable populations (Texas and Japan) of Drosophila melanogaster were surveyed at 21 allozyme loci on the second and third chromosomes and for chromosomal gene arrangements on those two chromosomes. Over 220 independent gametes were sampled from each population. The types and frequencies of the surveyed genetic variation are similar to those observed previously and suggest only slight differentiation among geographically distant populations. Linkage disequilibrium among linked allozymes loci is only slightly, if at all, detectable with these sample sizes. Linkage disequilibrium between linked inversions and allozymes loci is common especially when located in the same arm. These disequilibria appear to be in the same direction for most comparisons in the two population samples. This result is interpreted as evidence of similar selective environments (ecological and genetic) in the two populations. It is also noted that the direction of these linkage disequilibria appears to be oriented with respect to the gene frequencies at the component loci.

scholarly journals INVERSIONS FAIL TO ACCOUNT FOR ALLOZYME CLINES

Genetics ◽  
1978 ◽  
Vol 88 (3) ◽  
pp. 515-527
Author(s):  
R A Voelker ◽  
C Clark Cockerham ◽  
F M Johnson ◽  
H E Schaffer ◽  
Terumi Mukai ◽  
...  
Keyword(s):  
United States ◽  
Drosophila Melanogaster ◽  
Natural Populations ◽  
Allele Frequencies ◽  
Eastern United States ◽  
Allozyme Loci ◽  
And Inversion

ABSTRACT Allozyme and inversion data from natural populations of Drosophila melanogaster from the eastern United States were analyzed to determine whether the clines at allozyme loci are due to nonrandom associations with common cosmopolitan inversions. All inversions show strong clines. Clines were large and significant for half of the eight allozyme loci. An analysis of the contribution of inversions to clines of allozyme genes revealed three outcomes: the inversion cline (1) enhanced the allozyme cline, but was only partly responsible, (2) reduced the allozyme cline, and (3) had no effect. The allozyme clines were mainly determined by the pattern of allele frequencies within the chromosomal arrangements. Consequently, it was concluded that allozyme clines would exist in the absence of inversion clines.

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