IMPACTS OF PHYLOGENETIC DILUTION AND CONCENTRATION EFFECTS ON SPECIES DIVERSITY AND DISTRIBUTION PATTERNS

2017 ◽  
Vol 25 (01) ◽  
pp. 71-81
Author(s):  
YOUHUA CHEN

In theoretical ecology and community ecology, it is still unclear how phylogenetic community structure and species distributions are linked together. In this paper, a neutral model for evaluating phylogenetic constraints on species diversity and distribution patterns is developed to address these issues. To accomplish this, temporal species distribution and diversity patterns are evaluated and simulated by considering the impact of phylogenetic relatedness of species in a lattice landscape with square grids. A continuous patch for the resultant distributional range map of a species is defined as a group of grids in which the interior grids are adjacent to each other while the edge grids of the patch are isolated from other remaining grids in the range map. The adjacency or isolation of a grid with respect to another grid follows the von Neumann neighborhood criterion. The hypothesis tested is: phylogenetically closely related species tend to avoid each other (phylogenetic dilution), which produces a phylogenetic overdispersion pattern. In this case, all species have similar species abundances and distribution-patch size patterns. In contrast, if closely related species tend to associate together (phylogenetic concentration), a phylogenetic clustering pattern emerges: phylogenetically distinct species tend to have higher abundances and more large distribution patches. Using simulations, this paper presents results which demonstrate the reverse phenomenon: if it is assumed that phylogenetic relatedness of species is modeled as a dilution effect, the resultant distributional maps for evolutionarily distinct species present significantly increased numbers of continuous large patches. An evolutionarily distinct clade tends to have significantly higher relative abundance than other clades in all simulations. It was also found that if phylogenetic relatedness of species is modeled as a concentration effect, the simulated distributional map of each species would present a similar percentage of large patches for both evolutionarily unique and common clades for many cases when the community size is large enough. However, being similar to dilution effect, the resultant species relative abundance for evolutionarily unique clade is significantly higher than that for evolutionarily common clade. In conclusion, evolutionary distinct species will have more chances to survive with high populations and less fragmented distributional range in environments where the phylogenetic dilution effect is functioning. It is hoped that these results contributed to clarifying the complex associations generated by phylogenetic community structure in future ecological and evolutionary studies.

Phytotaxa ◽  
2021 ◽  
Vol 528 (2) ◽  
pp. 93-110
Author(s):  
JOSÉ SAID GUTIÉRREZ-ORTEGA ◽  
MIGUEL ANGEL PÉREZ-FARRERA ◽  
JEFFREY CHEMNICK ◽  
TIMOTHY J. GREGORY

The cycad genus Dioon comprises 17 species from Mexico and Honduras, all of them delimited based on their morphological variation and geographic distribution. A recent evaluation of the biological variation among Dioon populations from Oaxaca and Chiapas, Mexico, demonstrated that the concept of the species Dioon merolae actually consists of three lineages that should be recognized as different taxa. One lineage was already described as Dioon oaxacensis, leaving the concept of Dioon merolae comprising two lineages distributed on both sides of the Isthmus of Tehuantepec. However, there are conspicuous morphological differences between these two lineages. Here, we tested whether such a differentiation within the concept of Dioon merolae merits the differentiation of two different taxa. We evaluated the qualitative and morphometric variation among populations belonging to the Dioon merolae lineages, and compared it with the closely related species Dioon oaxacensis. Morphological observations and statistical tests demonstrated that the populations of southeastern Oaxaca, traditionally considered as part of Dioon merolae, represent a distinct species that we described as Dioon salas-moralesae. Identifying the diagnostic characters of this new species helps enable an understanding of the criteria that should be considered to delineate the boundaries between other cycad species.


2021 ◽  
Vol 66 (1) ◽  
pp. 355-372
Author(s):  
Clément Gilbert ◽  
Jean Peccoud ◽  
Richard Cordaux

Insects are major contributors to our understanding of the interaction between transposable elements (TEs) and their hosts, owing to seminal discoveries, as well as to the growing number of sequenced insect genomes and population genomics and functional studies. Insect TE landscapes are highly variable both within and across insect orders, although phylogenetic relatedness appears to correlate with similarity in insect TE content. This correlation is unlikely to be solely due to inheritance of TEs from shared ancestors and may partly reflect preferential horizontal transfer of TEs between closely related species. The influence of insect traits on TE landscapes, however, remains unclear. Recent findings indicate that, in addition to being involved in insect adaptations and aging, TEs are seemingly at the cornerstone of insect antiviral immunity. Thus, TEs are emerging as essential insect symbionts that may have deleterious or beneficial consequences on their hosts, depending on context.


Phytotaxa ◽  
2019 ◽  
Vol 397 (2) ◽  
pp. 169
Author(s):  
YA QUN TAO ◽  
GUO GENG JIA ◽  
SEIN LAI LAI AUNG ◽  
QING LI WU ◽  
HONG XUE LU ◽  
...  

Two Alternaria species, A. carotiincultae and A. glehniae sp. nov. are isolated from necrotic leaf symptoms of Ligusticum chuanxiong Hort. and Glehnia littoralis Fr. Schmidt ex Miq in China, respectively. The two species are determined as distinct species belonging to sect. Radicina of Alternaria based on morphology and a multigene analysis of ITS, EF-1α, RPB2 and ATPase sequences. Alternaria glehniae is illustrated here as a novel species because the conidial size, septa and sporulation patterns are different from its closely related species. A. carotiincultae is also described as a new record in China.


2012 ◽  
Vol 81 (4) ◽  
pp. 199-221 ◽  
Author(s):  
Bert W. Hoeksema

A phylogenetically based comparative analysis of onshore-offshore distribution patterns of mushroom coral species (Scleractinia: Fungiidae) was made to reconstruct an evolutionary scenario for differentiation in fungiid shelf habitats. This phyloecological study integrates data on fungiid distribution patterns along environmental gradients on the Spermonde Shelf, SW Sulawesi, with a recently published phylogeny reconstruction of the Fungiidae. A mushroom coral fauna of 34 species was used to compare their distributions by use of 50-m2 belt quadrats in transects (1) from the mainland to the shelf edge, (2) around reefs with regard to predominant wind directions, and (3) over bathymetrical reef zones. Species association ordinations were made for each of the four shelf zones using both abundance and incidence data to examine whether closely related species cooccurred. Some closely related species or even sister species appeared to show very similar distribution patterns and to coexist in high abundances. These results indicate that there may not be community saturation and competitive exclusion among mushroom corals species, most of which are free-living. In reconstructions of fungiid habitat evolution, offshore reef slopes appear to be original (ancestral), whereas onshore habitats, shallow reef flats, and deep sandy reef bases seem to be derived. The latter is in contrast with an earlier hypothesis, in which deep sandy substrates were considered ancestral mushroom coral habitats.


2013 ◽  
Vol 59 (4) ◽  
pp. 449-457 ◽  
Author(s):  
Youhua Chen

Abstract In this contribution, I identify possible biotic elements of reptiles of China using biotic element analysis. I test whether the vicariance model could significantly shape reptilian current distribution patterns. My results show that dispersal is prevailing for reptiles in China. There are four major biotic elements in reptilian distribution, which are East Xizang, Yunnan-Guizhou Plateau, Taiwan and Hainan, respectively. The test of distributional areas is significantly more clustered than expected by chance, while in another test that closely related species are homogeneously distributed across biotic elements cannot be rejected. Therefore I argued that vicariance might be one of the key processes in patterning reptilian distribution in China. In addition, I develop an improved biotic element analysis in biogeographic studies, by performing biotic element analysis in an iterative manner in order to diagnose more geographically restricted elements until no noise components found. The importance of antecedent selection of distributional data for the subsequent analysis is also discussed. Besides, my study indicates that biodiversity hotspots are not fully overlapped with areas of endemism for reptilians in East Asia.


1963 ◽  
Vol 41 (6) ◽  
pp. 1069-1077 ◽  
Author(s):  
G. A. Schad

The genus Pseudophysaloptera, recognized as a genus distinct from Physatoptera, is tentatively considered monotypic. The several species previously assigned to the genus Pseudophysaloptera, and the closely related species Physaloptera kotlani, have been reduced to one polytypic species, Pseudophysaloptera formosana, with two subspecies, P. f. formosana and P. f. soricina. The former occurs in Oriental species of Suncus, while the latter occurs in Palaearctic and Ethiopian soricid insectivores. North American specimens, which may represent a distinct species, are tentatively assigned to P. f. soricina. Presently available collections are only sufficient for a tentative identification of the Nearctic form.


Lankesteriana ◽  
2014 ◽  
Vol 14 (2) ◽  
Author(s):  
Stig Dalström

The plant that was first called “Odontoglossum wyattianum” by Gurney Wilson was exhibited at a meeting of the Royal Horticultural Society on January 3, 1928. No official description was ever published and no type specimen was ever designated, or has surfaced, hence making this distinct species a taxonomic ‘ghost’. The taxonomic validation of Odontoglossum wyattianum is made here through the designation of a holotype, together with a diagnosis, a brief taxonomic history and comparison with similar and closely related species.


2004 ◽  
Vol 61 (1) ◽  
pp. 31-39
Author(s):  
T. KUROSAWA

Two new species of Euphorbiaceae (sensu stricto), Mallotus bicarpellatus (Acalyphoideae) and Croton nepalensis (Crotonoideae), are described from Nepal. Mallotus bicarpellatus is closely related to M. philippensis but differs in having 1 or 2 pairs of leaf glands distinctly separated from the petiole attachment, pistillate flowers with staminodes and longer pedicels, and fewer locules and stigmas. Croton nepalensis differs from C. tiglium in having leaves with truncate, subcordate or rounded base, smaller, broadly ovoid capsules, and smaller seeds. A table is provided showing how Croton nepalensis differs from other closely related species. Croton himalaicus is here regarded as a synonym of C. tiglium, though it has been treated variously as a distinct species or a synonym of C. tiglium or C. birmanicus by recent authors. Distribution maps and graphs of altitudinal distribution are given for the new species.


2014 ◽  
Vol 59 (2) ◽  
pp. 221-228 ◽  
Author(s):  
Eugene A. Borovichev ◽  
Vadim A. Bakalin ◽  
Masanobu Higuchi

Abstract The discovery of Mannia androgyna (L.) A. Evans in Russian Asian and Japanese localities changes the conception of the distribution patterns of the taxon, previously regarded as principally a Mediterranean species. A description and illustrations based on specimens collected in Russian Asia and Japan are provided. The history of the taxonomic understanding of Mannia androgyna is briefly reviewed, and features differentiating closely related species are discussed.


1977 ◽  
Vol 109 (1) ◽  
pp. 67-76
Author(s):  
Eugene Munroe

AbstractLectotypes are designated for Margaronia curvilinea Janse, 1924, and Margaronia pratti Janse, 1924. These species are referred to Palpita Hübner, [1808], as new combinations. They are redescribed and differentiated from certain closely related species. Phalaena Geometra annulata Fabricius, 1794, and Botys partialis Lederer, 1863, are treated as species inquirenda in the absence of type material. Glyphodes celsalis Walker, 1859, and Margaronia inusitata Butler, 1879, are treated as distinct species and are transferred to Palpita as new combinations. Margaronia warrenalis Swinhoe, 1894, is transferred to Palpita as a new combination; a lectotype is designated for this species and its characters are compared with those of P. curvilinea. Palpita varii n. sp., from Manusela, Ceram, and P. jansei n. sp., from the Island of Mioswar, Geelvink Bay, New Guinea, are described from holotypes drawn from the type-series of P. pratti; characters differentiating these three species are given.


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