TECHNIQUES FOR OPTIMIZATION OF QUERIES ON INTEGRATED BIOLOGICAL RESOURCES

2004 ◽  
Vol 02 (02) ◽  
pp. 375-411 ◽  
Author(s):  
ZOÉ LACROIX ◽  
LOUIQA RASCHID ◽  
BARBARA A. ECKMAN
Keyword(s):  
Scientific Discovery ◽  
Heterogeneous Data ◽  
Semantic Knowledge ◽  
Scientific Data ◽  
Integration Platform ◽  
Domain Specific ◽  
Heterogeneous Data Sources ◽  
Support Tools ◽  
Efficient Integration ◽  
Scientific Integration

Today, scientific data are inevitably digitized, stored in a wide variety of formats, and are accessible over the Internet. Scientific discovery increasingly involves accessing multiple heterogeneous data sources, integrating the results of complex queries, and applying further analysis and visualization applications in order to collect datasets of interest. Building a scientific integration platform to support these critical tasks requires accessing and manipulating data extracted from flat files or databases, documents retrieved from the Web, as well as data that are locally materialized in warehouses or generated by software. The lack of efficiency of existing approaches can significantly affect the process with lengthy delays while accessing critical resources or with the failure of the system to report any results. Some queries take so much time to be answered that their results are returned via email, making their integration with other results a tedious task. This paper presents several issues that need to be addressed to provide seamless and efficient integration of biomolecular data. Identified challenges include: capturing and representing various domain specific computational capabilities supported by a source including sequence or text search engines and traditional query processing; developing a methodology to acquire and represent semantic knowledge and metadata about source contents, overlap in source contents, and access costs; developing cost and semantics based decision support tools to select sources and capabilities, and to generate efficient query evaluation plans.

scholarly journals agINFRA: a research data hub for agriculture, food and the environment

F1000Research ◽  
2015 ◽  
Vol 4 ◽  
pp. 127
Author(s):  
Andreas Drakos ◽  
Vassilis Protonotarios ◽  
Nikos Manouselis
Keyword(s):  
Agricultural Research ◽  
Heterogeneous Data ◽  
Multiple Roles ◽  
Scientific Communities ◽  
Data Intensive ◽  
Domain Specific ◽  
Food Research ◽  
Heterogeneous Data Sources ◽  
Funded Project ◽  
Research And Education

The agINFRA project (www.aginfra.eu) was a European Commission funded project under the 7th Framework Programme that aimed to introduce agricultural scientific communities to the vision of open and participatory data-intensive science. agINFRA has now evolved into the European hub for data-powered research on agriculture, food and the environment, serving the research community through multiple roles.Working on enhancing the interoperability between heterogeneous data sources, the agINFRA project has left a set of grid- and cloud- based services that can be reused by future initiatives and adopted by existing ones, in order to facilitate the dissemination of agricultural research, educational and other types of data. On top of that, agINFRA provided a set of domain-specific recommendations for the publication of agri-food research outcomes. This paper discusses the concept of the agINFRA project and presents its major outcomes, as adopted by existing initiatives activated in the context of agricultural research and education.

scholarly journals agINFRA: a research data hub for agriculture, food and the environment

F1000Research ◽  
2015 ◽  
Vol 4 ◽  
pp. 127 ◽  
Author(s):  
Andreas Drakos ◽  
Vassilis Protonotarios ◽  
Nikos Manouselis
Keyword(s):  
Agricultural Research ◽  
Heterogeneous Data ◽  
Research Data ◽  
Scientific Communities ◽  
Data Intensive ◽  
Domain Specific ◽  
Food Research ◽  
Heterogeneous Data Sources ◽  
Funded Project ◽  
Research And Education

The agINFRA project (www.aginfra.eu) is a European Commission funded project under the 7th Framework Programme that aimed to introduce agricultural scientific communities to the vision of open and participatory data-intensive science. Working on enhancing the interoperability between heterogeneous data sources, the agINFRA project has left a set of grid- and cloud- based services that can be reused by future initiatives and adopted by existing ones, in order to facilitate the dissemination of agricultural research, educational and other types of data. On top of that, agINFRA provided a set of domain-specific recommendations for the publication of agri-food research outcomes. This paper discusses the concept of the agINFRA project and presents its major outcomes, as adopted by existing initiatives activated in the context of agricultural research and education.

scholarly journals Accessible Routes Integrating Data from Multiple Sources

2020 ◽  
Vol 10 (1) ◽  
pp. 7
Author(s):  
Miguel R. Luaces ◽  
Jesús A. Fisteus ◽  
Luis Sánchez-Fernández ◽  
Mario Munoz-Organero ◽  
Jesús Balado ◽  
...  
Keyword(s):  
Information System ◽  
Data Model ◽  
Large Scale ◽  
Heterogeneous Data ◽  
Multiple Sources ◽  
Heterogeneous Data Sources ◽  
Different Types ◽  
Software Sensors ◽  
The City

Providing citizens with the ability to move around in an accessible way is a requirement for all cities today. However, modeling city infrastructures so that accessible routes can be computed is a challenge because it involves collecting information from multiple, large-scale and heterogeneous data sources. In this paper, we propose and validate the architecture of an information system that creates an accessibility data model for cities by ingesting data from different types of sources and provides an application that can be used by people with different abilities to compute accessible routes. The article describes the processes that allow building a network of pedestrian infrastructures from the OpenStreetMap information (i.e., sidewalks and pedestrian crossings), improving the network with information extracted obtained from mobile-sensed LiDAR data (i.e., ramps, steps, and pedestrian crossings), detecting obstacles using volunteered information collected from the hardware sensors of the mobile devices of the citizens (i.e., ramps and steps), and detecting accessibility problems with software sensors in social networks (i.e., Twitter). The information system is validated through its application in a case study in the city of Vigo (Spain).

scholarly journals Bridging Science and Practice-Importance of Stakeholders in the Development of Decision Support: Lessons Learned

2021 ◽  
Vol 13 (10) ◽  
pp. 5744
Author(s):  
Innocent K. Tumwebaze ◽  
Joan B. Rose ◽  
Nynke Hofstra ◽  
Matthew E. Verbyla ◽  
Daniel A. Okaali ◽  
...  
Keyword(s):  
Decision Support ◽  
Stakeholder Participation ◽  
Scientific Data ◽  
Lessons Learned ◽  
Future Research ◽  
Decision Support Tools ◽  
Local Data ◽  
Funding Sources ◽  
Sanitation And Hygiene ◽  
Support Tools

User-friendly, evidence-based scientific tools to support sanitation decisions are still limited in the water, sanitation and hygiene (WASH) sector. This commentary provides lessons learned from the development of two sanitation decision support tools developed in collaboration with stakeholders in Uganda. We engaged with stakeholders in a variety of ways to effectively obtain their input in the development of the decision support tools. Key lessons learned included: tailoring tools to stakeholder decision-making needs; simplifying the tools as much as possible for ease of application and use; creating an enabling environment that allows active stakeholder participation; having a dedicated and responsive team to plan and execute stakeholder engagement activities; involving stakeholders early in the process; having funding sources that are flexible and long-term; and including resources for the acquisition of local data. This reflection provides benchmarks for future research and the development of tools that utilize scientific data and emphasizes the importance of engaging with stakeholders in the development process.

scholarly journals Improving Sustainability of Smart Cities through Visualization Techniques for Big Data from IoT Devices

2020 ◽  
Vol 12 (14) ◽  
pp. 5595 ◽  
Author(s):  
Ana Lavalle ◽  
Miguel A. Teruel ◽  
Alejandro Maté ◽  
Juan Trujillo
Keyword(s):  
Big Data ◽  
Smart City ◽  
Smart Cities ◽  
Fire Department ◽  
Heterogeneous Data ◽  
Fire Extinguishing ◽  
Heterogeneous Data Sources ◽  
Iot Devices ◽  
Visualization Techniques ◽  
The Impact

Fostering sustainability is paramount for Smart Cities development. Lately, Smart Cities are benefiting from the rising of Big Data coming from IoT devices, leading to improvements on monitoring and prevention. However, monitoring and prevention processes require visualization techniques as a key component. Indeed, in order to prevent possible hazards (such as fires, leaks, etc.) and optimize their resources, Smart Cities require adequate visualizations that provide insights to decision makers. Nevertheless, visualization of Big Data has always been a challenging issue, especially when such data are originated in real-time. This problem becomes even bigger in Smart City environments since we have to deal with many different groups of users and multiple heterogeneous data sources. Without a proper visualization methodology, complex dashboards including data from different nature are difficult to understand. In order to tackle this issue, we propose a methodology based on visualization techniques for Big Data, aimed at improving the evidence-gathering process by assisting users in the decision making in the context of Smart Cities. Moreover, in order to assess the impact of our proposal, a case study based on service calls for a fire department is presented. In this sense, our findings will be applied to data coming from citizen calls. Thus, the results of this work will contribute to the optimization of resources, namely fire extinguishing battalions, helping to improve their effectiveness and, as a result, the sustainability of a Smart City, operating better with less resources. Finally, in order to evaluate the impact of our proposal, we have performed an experiment, with non-expert users in data visualization.

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