VarSem: declarative expression and automated inference of variable usage semantics

Author(s):  
Yin Liu ◽  
Eli Tilevich
Keyword(s):  
2018 ◽  
Author(s):  
Youngjun Cho ◽  
Simon J. Julier ◽  
Nadia Bianchi-Berthouze

AbstractBackgroundA smartphone is a promising tool for daily cardiovascular measurement and mental stress monitoring. Photoplethysmography (PPG) and low-cost thermography can be used to create cheap, convenient and mobile systems. However, to achieve robustness, a person has to remain still for several minutes while a measurement is being taken. This is very cumbersome, and limits the usage in applications such producing instant measurements of stress.ObjectiveWe propose to use smartphone-based mobile PPG and thermal imaging to provide a fast binary measure of stress responses to an event using dynamical physiological changes which occur within 20 seconds of the event finishing.MethodsWe propose a system that uses a smartphone and its physiological sensors to reliably and continuously measure over a short window of time a person’s blood volume pulse, the time interval between heartbeats (R-R interval) and the 1D thermal signature of the nose tip. 17 healthy participants, involved in a series of stress-inducing mental activities, measured their physiological response to stress in the 20 second-window immediately following each activity. A 10-cm Visual Analogue Scale was used by them to self-report their level of mental stress. As a main labeling strategy, normalized K-means clustering is used to better treat interpersonal differences in ratings. By taking an array of the R-R intervals and thermal directionality as a low-level feature input, we mainly use an artificial neural network to enable the automatic feature learning and the machine learning inference process. To compare the automated inference performance, we also extracted widely used high level features from HRV (e.g., LF/HF ratio) and the thermal signature and input them to a k-nearest neighbor to infer perceived stress levels.ResultsFirst, we tested the physiological measurement reliability. The measured cardiac signals were considered highly reliable (signal goodness probability used, Mean=0.9584, SD=0.0151). The proposed 1D thermal signal processing algorithm effectively minimized the effect of respiratory cycles on detecting the apparent temperature of the nose tip (respiratory signal goodness probability Mean=0.8998 to Mean=0). Second, we tested the 20 seconds instant perceived stress inference performance. The best results were obtained by using automatic feature learning and classification using artificial neural networks rather than using pre-crafted features. The combination of both modalities produced higher accuracy on the binary classification task using 17-fold leave-one-subject-out (LOSO) cross-validation (accuracy: HRV+Thermal: 76.96%; HRV: 60.29%; Thermal: 61.37%). The results are comparable with the state of the art automatic stress recognition methods requiring long term measurements (a minimum of 2 minutes for up to around 80% accuracy from LOSO). Lastly, we explored the impact of different data labeling strategies used in the field on the sensitivity of our inference methods and the need for normalization within individual.ConclusionsResults demonstrate the capability of smartphone biomedical imaging in instant mental stress recognition. Given that this approach does not require long measurements requiring attention and reduced mobility, it is more feasible for mobile mental healthcare solution in the wild.


Author(s):  
Ranjan Parekh ◽  
Nalin Sharda

Semantic characterization is necessary for developing intelligent multimedia databases, because humans tend to search for media content based on their inherent semantics. However, automated inference of semantic concepts derived from media components stored in a database is still a challenge. The aim of this chapter is to demonstrate how layered architectures and “visual keywords” can be used to develop intelligent search systems for multimedia databases. The layered architecture is used to extract meta-data from multimedia components at various layers of abstractions. While the lower layers handle physical file attributes and low-level features, the upper layers handle high-level features and attempts to remove ambiguities inherent in them. To access the various abstracted features, a query schema is presented, which provides a single point of access while establishing hierarchical pathways between feature-classes. Minimization of the semantic gap is addressed using the concept of “visual keyword” (VK). “Visual keywords” are segmented portions of images with associated low- and high-level features, implemented within a semantic layer on top of the standard low-level features layer, for characterizing semantic content in media components. Semantic information is however predominantly expressed in textual form, and hence is susceptible to the limitations of textual descriptors – viz. ambiguities related to synonyms, homonyms, hypernyms, and hyponyms. To handle such ambiguities, this chapter proposes a domain specific ontology-based layer on top of the semantic layer, to increase the effectiveness of the search process.


2019 ◽  
Author(s):  
Marina Marcet-Houben ◽  
Toni Gabaldón

Abstract Motivation The evolution and role of gene clusters in eukaryotes is poorly understood. Currently, most studies and computational prediction programs limit their focus to specific types of clusters, such as those involved in secondary metabolism. Results We present EvolClust, a python-based tool for the inference of evolutionary conserved gene clusters from genome comparisons, independently of the function or gene composition of the cluster. EvolClust predicts conserved gene clusters from pairwise genome comparisons and infers families of related clusters from multiple (all versus all) genome comparisons. Availability and implementation https://github.com/Gabaldonlab/EvolClust/. Supplementary information Supplementary data are available at Bioinformatics online.


Author(s):  
Athanasios Kokkos ◽  
Theodoros Tzouramanis

Online social networking services have come to dominate the dot com world: Countless online communities coexist on the social Web. Some typically characteristic user attributes, such as gender, age group, sexual orientation, are not automatically part of the profile information. In some cases user attributes can even be deliberately and maliciously falsified. This paper examines automated inference of gender on online social networks by analyzing written text with a combination of natural language processing and classification techniques. Extensive experimentation on LinkedIn and Twitter has yielded accuracy of this gender identification technique of up to 98.4 percent.


2002 ◽  
Vol 17 (1) ◽  
pp. 65-70 ◽  
Author(s):  
ADAM PEASE ◽  
IAN NILES

The IEEE Standard Upper Ontology (IEEE, 2001) is an effort to create a large, general-purpose, formal ontology. The ontology will be an open standard that can be reused for both academic and commercial purposes without fee, and it will be designed to support additional domain-specific ontologies. The effort is targeted for use in automated inference, semantic interoperability between heterogeneous information systems and natural language processing applications. The effort was begun in May 2000 with an e-mail discussion list, and since then there have been over 6000 e-mail messages among 170 subscribers. These subscribers include representatives from government, academia and industry in various countries. The effort was officially approved as an IEEE standards project in December 2000. Recently a successful workshop was held at IJCAI 2001 to discuss progress and proposals for this project (IJCAI, 2001).


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