Turbulence and Coral Reefs

2021 ◽  
Vol 13 (1) ◽  
pp. 343-373
Author(s):  
Kristen A. Davis ◽  
Geno Pawlak ◽  
Stephen G. Monismith
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Coherent Structures ◽  
Recent Progress ◽  
Complex Geometry ◽  
Numerical Models ◽  
Rough Boundary ◽  
Scalar Flux ◽  
Future Work ◽  
Surrounding Seawater

The interaction of coral reefs, both chemically and physically, with the surrounding seawater is governed, at the smallest scales, by turbulence. Here, we review recent progress in understanding turbulence in the unique setting of coral reefs—how it influences flow and the exchange of mass and momentum both above and within the complex geometry of coral reef canopies. Flow above reefs diverges from canonical rough boundary layers due to their large and highly heterogeneous roughness and the influence of surface waves. Within coral canopies, turbulence is dominated by large coherent structures that transport momentum both into and away from the canopy, but it is also generated at smaller scales as flow is forced to move around branches or blades, creating wakes. Future work interpreting reef-related observations or numerical models should carefully consider the influence that spatial variation has on momentum and scalar flux.

Identifying Physico-Chemical Laws from the Robotically Collected Data

2019 ◽  
Author(s):  
Liwei Cao ◽  
Danilo Russo ◽  
Vassilios S. Vassiliadis ◽  
Alexei Lapkin
Keyword(s):  
Experimental Data ◽  
Numerical Models ◽  
Predictor Variable ◽  
Physical Models ◽  
Training Data ◽  
Mixed Integer ◽  
Physico Chemical ◽  
Data Points ◽  
Future Work ◽  
The Relationship

<p>A mixed-integer nonlinear programming (MINLP) formulation for symbolic regression was proposed to identify physical models from noisy experimental data. The formulation was tested using numerical models and was found to be more efficient than the previous literature example with respect to the number of predictor variables and training data points. The globally optimal search was extended to identify physical models and to cope with noise in the experimental data predictor variable. The methodology was coupled with the collection of experimental data in an automated fashion, and was proven to be successful in identifying the correct physical models describing the relationship between the shear stress and shear rate for both Newtonian and non-Newtonian fluids, and simple kinetic laws of reactions. Future work will focus on addressing the limitations of the formulation presented in this work, by extending it to be able to address larger complex physical models.</p><p><br></p>

Prominence of environmental and anthropogenic agents on the occurrence of coral reef bleaching syndrome and coral diseases

2024 ◽  
Vol 74 (10) ◽  
pp. 6139-2024
Author(s):  
MICHAŁ SCHULZ ◽  
ALEKSANDRA ŁOŚ ◽  
PATRYCJA SKOWRONEK ◽  
ANETA STRACHECKA
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Oil Spills ◽  
Global Scale ◽  
Ecological Processes ◽  
Coral Diseases ◽  
Rapid Changes ◽  
Anthropogenic Threats ◽  
Negative Factors ◽  
Main Relationship

Coral reefs are the most productive ecosystems on Earth. They ensure the conservation of biodiversity and are a live habitat for 25% of all marine organisms. The main relationship on the coral reef is the symbiosis between corals and algae from the genus Symbiodinium (commonly called zooxanthellae). The authors of this publication have characterized and described the factors limiting the occurrence of coral reefs, including: water temperature, salinity, access to sunlight, contamination, physicochemical and hydromechanical parameters of water. Moreover anthropogenic threats to coral reefs have been specified, including diving tourism, ecological disasters (e.g. oil spills) and the development of marine aquaristics. Rapid changes in the basic living conditions are dangerous for corals and their symbionts and may cause the unsuitability of the new environment resulting in diseases such as coral bleaching. Corals bleaching is a disease associated with the break of the coral and algae relationship which results in a coral reef death on a global scale. Awareness of these negative factors, often related to human activity, may allow us to better understand the ecological processes that are the basis of reef functioning and might enable us to prevent and oppose to the changes and ecological recessions of coral reefs.

scholarly journals Turbid Coral Reefs: Past, Present and Future—A Review

Diversity ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 251
Author(s):  
Adi Zweifler (Zvifler) ◽  
Michael O’Leary ◽  
Kyle Morgan ◽  
Nicola K. Browne
Keyword(s):  
Climate Change ◽  
Coral Reef ◽  
Coral Reefs ◽  
Environmental Change ◽  
Scientific Literature ◽  
Conservation Status ◽  
Climate Change Impacts ◽  
Geographic Range ◽  
Reef Complex ◽  
Sediment Input

Increasing evidence suggests that coral reefs exposed to elevated turbidity may be more resilient to climate change impacts and serve as an important conservation hotspot. However, logistical difficulties in studying turbid environments have led to poor representation of these reef types within the scientific literature, with studies using different methods and definitions to characterize turbid reefs. Here we review the geological origins and growth histories of turbid reefs from the Holocene (past), their current ecological and environmental states (present), and their potential responses and resilience to increasing local and global pressures (future). We classify turbid reefs using new descriptors based on their turbidity regime (persistent, fluctuating, transitional) and sources of sediment input (natural versus anthropogenic). Further, by comparing the composition, function and resilience of two of the most studied turbid reefs, Paluma Shoals Reef Complex, Australia (natural turbidity) and Singapore reefs (anthropogenic turbidity), we found them to be two distinct types of turbid reefs with different conservation status. As the geographic range of turbid reefs is expected to increase due to local and global stressors, improving our understanding of their responses to environmental change will be central to global coral reef conservation efforts.

scholarly journals Stokes drift through corals

2021 ◽  
Author(s):  
Joseph J. Webber ◽  
Herbert E. Huppert
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Porous Layer ◽  
Large Scale ◽  
Fluid Layer ◽  
Ocean Waves ◽  
Stokes Drift ◽  
Inviscid Fluid ◽  
Porous Bed ◽  
Vertical Drift

AbstractMotivated by shallow ocean waves propagating over coral reefs, we investigate the drift velocities due to surface wave motion in an effectively inviscid fluid that overlies a saturated porous bed of finite depth. Previous work in this area either neglects the large-scale flow between layers (Phillips in Flow and reactions in permeable rocks, Cambridge University Press, Cambridge, 1991) or only considers the drift above the porous layer (Monismith in Ann Rev Fluid Mech 39:37–55, 2007). Overcoming these limitations, we propose a model where flow is described by a velocity potential above the porous layer and by Darcy’s law in the porous bed, with derived matching conditions at the interface between the two layers. Both a horizontal and a novel vertical drift effect arise from the damping of the porous bed, which requires the use of a complex wavenumber k. This is in contrast to the purely horizontal second-order drift first derived by Stokes (Trans Camb Philos Soc 8:441–455, 1847) when working with solely a pure fluid layer. Our work provides a physical model for coral reefs in shallow seas, where fluid drift both above and within the reef is vitally important for maintaining a healthy reef ecosystem (Koehl et al. In: Proceedings of the 8th International Coral Reef Symposium, vol 2, pp 1087–1092, 1997; Monismith in Ann Rev Fluid Mech 39:37–55, 2007). We compare our model with field measurements by Koehl and Hadfield (J Mar Syst 49:75–88, 2004) and also explain the vertical drift effects as documented by Koehl et al. (Mar Ecol Prog Ser 335:1–18, 2007), who measured the exchange between a coral reef layer and the (relatively shallow) sea above.

scholarly journals Evaluation of coral reef carbonate production models at a global scale

2015 ◽  
Vol 12 (5) ◽  
pp. 1339-1356 ◽  
Author(s):  
N. S. Jones ◽  
A. Ridgwell ◽  
E. J. Hendy
Keyword(s):  
Coral Reef ◽  
Predictive Power ◽  
Numerical Models ◽  
Coral Cover ◽  
Light Availability ◽  
Global Scale ◽  
Data Set ◽  
Carbonate Production ◽  
Future Global Warming ◽  
Atmospheric Co2 Concentrations

Abstract. Calcification by coral reef communities is estimated to account for half of all carbonate produced in shallow water environments and more than 25% of the total carbonate buried in marine sediments globally. Production of calcium carbonate by coral reefs is therefore an important component of the global carbon cycle; it is also threatened by future global warming and other global change pressures. Numerical models of reefal carbonate production are needed for understanding how carbonate deposition responds to environmental conditions including atmospheric CO2 concentrations in the past and into the future. However, before any projections can be made, the basic test is to establish model skill in recreating present-day calcification rates. Here we evaluate four published model descriptions of reef carbonate production in terms of their predictive power, at both local and global scales. We also compile available global data on reef calcification to produce an independent observation-based data set for the model evaluation of carbonate budget outputs. The four calcification models are based on functions sensitive to combinations of light availability, aragonite saturation (Ωa) and temperature and were implemented within a specifically developed global framework, the Global Reef Accretion Model (GRAM). No model was able to reproduce independent rate estimates of whole-reef calcification, and the output from the temperature-only based approach was the only model to significantly correlate with coral-calcification rate observations. The absence of any predictive power for whole reef systems, even when consistent at the scale of individual corals, points to the overriding importance of coral cover estimates in the calculations. Our work highlights the need for an ecosystem modelling approach, accounting for population dynamics in terms of mortality and recruitment and hence calcifier abundance, in estimating global reef carbonate budgets. In addition, validation of reef carbonate budgets is severely hampered by limited and inconsistent methodology in reef-scale observations.

scholarly journals Can we measure beauty? Computational evaluation of coral reef aesthetics

PeerJ ◽  
2015 ◽  
Vol 3 ◽  
pp. e1390 ◽  
Author(s):  
Andreas F. Haas ◽  
Marine Guibert ◽  
Anja Foerschner ◽  
Tim Co ◽  
Sandi Calhoun ◽  
...  
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Local Population ◽  
Machine Learning Algorithms ◽  
Monitoring Tool ◽  
Photographic Images ◽  
Aesthetic Appearance ◽  
The Aesthetic ◽  
Monitoring Protocols ◽  
Aesthetic Values

The natural beauty of coral reefs attracts millions of tourists worldwide resulting in substantial revenues for the adjoining economies. Although their visual appearance is a pivotal factor attracting humans to coral reefs current monitoring protocols exclusively target biogeochemical parameters, neglecting changes in their aesthetic appearance. Here we introduce a standardized computational approach to assess coral reef environments based on 109 visual features designed to evaluate the aesthetic appearance of art. The main feature groups include color intensity and diversity of the image, relative size, color, and distribution of discernable objects within the image, and texture. Specific coral reef aesthetic values combining all 109 features were calibrated against an established biogeochemical assessment (NCEAS) using machine learning algorithms. These values were generated for ∼2,100 random photographic images collected from 9 coral reef locations exposed to varying levels of anthropogenic influence across 2 ocean systems. Aesthetic values proved accurate predictors of the NCEAS scores (root mean square error < 5 forN≥ 3) and significantly correlated to microbial abundance at each site. This shows that mathematical approaches designed to assess the aesthetic appearance of photographic images can be used as an inexpensive monitoring tool for coral reef ecosystems. It further suggests that human perception of aesthetics is not purely subjective but influenced by inherent reactions towards measurable visual cues. By quantifying aesthetic features of coral reef systems this method provides a cost efficient monitoring tool that targets one of the most important socioeconomic values of coral reefs directly tied to revenue for its local population.

scholarly journals Using virtual reality to estimate aesthetic values of coral reefs

2018 ◽  
Vol 5 (4) ◽  
pp. 172226 ◽  
Author(s):  
Julie Vercelloni ◽  
Sam Clifford ◽  
M. Julian Caley ◽  
Alan R. Pearse ◽  
Ross Brown ◽  
...  
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Structural Complexity ◽  
Natural Environments ◽  
Natural Ecosystems ◽  
Aesthetic Value ◽  
Natural Systems ◽  
Holistic Conservation ◽  
Past Experiences ◽  
Aesthetic Values

Aesthetic value, or beauty, is important to the relationship between humans and natural environments and is, therefore, a fundamental socio-economic attribute of conservation alongside other ecosystem services. However, beauty is difficult to quantify and is not estimated well using traditional approaches to monitoring coral-reef aesthetics. To improve the estimation of ecosystem aesthetic values, we developed and implemented a novel framework used to quantify features of coral-reef aesthetics based on people's perceptions of beauty. Three observer groups with different experience to reef environments (Marine Scientist, Experienced Diver and Citizen) were virtually immersed in Australian's Great Barrier Reef (GBR) using 360° images. Perceptions of beauty and observations were used to assess the importance of eight potential attributes of reef-aesthetic value. Among these, heterogeneity, defined by structural complexity and colour diversity, was positively associated with coral-reef-aesthetic values. There were no group-level differences in the way the observer groups perceived reef aesthetics suggesting that past experiences with coral reefs do not necessarily influence the perception of beauty by the observer. The framework developed here provides a generic tool to help identify indicators of aesthetic value applicable to a wide variety of natural systems. The ability to estimate aesthetic values robustly adds an important dimension to the holistic conservation of the GBR, coral reefs worldwide and other natural ecosystems.

scholarly journals Les rivages des Bermudes et les formes littorales de dissolution du calcaire

2005 ◽  
Vol 2 (2) ◽  
pp. 115-137 ◽  
Author(s):  
François Taillefer
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Mechanical Action ◽  
Intermediate Position ◽  
Striking Feature ◽  
Tidal Range ◽  
Intermediate Type ◽  
North East ◽  
The North

The littoral morphology of the Bermudas is an erosional morphology in limestones, the main processes being mechanical action and solution. The temperatures, in January and February, of the waters washing the Bermudas, are low enough to prevent the growing of true coral reefs. Therefore, it is not the morphology of a coral reef. The predominance of wave-cut cliffs is the most striking feature, despite the low and gently rolling topography. There are, however, other types of coasts on the islands, the mangrove being found on many sheltered shores. The writer thus opposes the sheltered shores of the sounds to the ones exposed on the southcoast, while the shores of the north and north-east coasts belong to an intermediate type. The steplike arrangement of the coastal forms of solution of the Bermudas limestones is primarily linked to the amount of the tidal range. These features are similar to those described on the shores of the warm seas, where the tide is negligible or weak. The Bermudas occupy an intermediate position between the regions where reefs are built by corals, and those, to the north, where solution, helped by other processes, occurs without compensation.

scholarly journals Measuring Sound at a Cold-Water Coral Reef to Assess the Impact of COVID-19 on Noise Pollution

2021 ◽  
Vol 8 ◽  
Author(s):  
Laurence H. De Clippele ◽  
Denise Risch
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Sea Level ◽  
Cold Water ◽  
Noise Pollution ◽  
Ecosystem Functions ◽  
Noise Levels ◽  
Level Height ◽  
Water Coral

This study compares the noise levels at the cold-water coral Tisler reef, before and after the closure of the border between Norway and Sweden, which occurred as a direct result of the COVID-19 pandemic. The Tisler reef is a marine protected area located under a ferry “highway” that connects Norway and Sweden. Cold-water coral reefs are recognised as being important hotspots of both biodiversity and biomass, they function as breeding and nursing grounds for commercially important fish and are essential in providing ecosystem functions. Whilst studies have shown that fishery, ocean warming, and acidification threaten them, the effects of noise pollution on cold-water coral reefs remains unstudied. To study the severity of noise pollution at the Tisler reef, a long-term acoustic recorder was deployed from 29 January 2020 until 26 May 2020. From 15 March COVID-19 lockdown measures stopped passenger vessel traffic between Norway and Sweden. This study found that the overall noise levels were significantly lower after border closure, due to reduced ferry traffic, wind speeds, and sea level height. When comparing the median hourly noise levels of before vs. after border closure, this study measured a significant reduction in the 63–125 Hz 1/3 octave band noise levels of 8.94 ± 0.88 (MAD) dB during the day (07:00:00–19:59:59) and 1.94 ± 0.11 (MAD) dB during the night (20:00:00–06:59:59). Since there was no ferry traffic during the night, the drop in noise levels at night was likely driven by seasonal changes, i.e., the reduction in wind speed and sea level height when transitioning from winter to spring. Taking into account this seasonal effect, it can be deduced that the COVID-19 border closure reduced the noise levels in the 63–125 Hz 1/3 octave bands at the Tisler reef by 7.0 ± 0.99 (MAD) dB during the day. While the contribution of, and changes in biological, weather-related and geophysical sound sources remain to be assessed in more detail, understanding the extent of anthropogenic noise pollution at the Tisler cold-water coral reef is critical to guide effective management to ensure the long-term health and conservation of its ecosystem functions.

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