Dynamic Properties of Fluorescent Reporter Proteins Femtoinjected into ES Single-Cells

2008 ◽  
Vol 7 (5) ◽  
pp. 7290.2008.00023 ◽  
Author(s):  
Lucia le Roux ◽  
Andrei Volgin ◽  
David Maxwell ◽  
Katashi Ishihara ◽  
Juri Gelovani ◽  
...  

2007 ◽  
Vol 145 (4) ◽  
pp. 1371-1382 ◽  
Author(s):  
Paul R. Hunter ◽  
Christian P. Craddock ◽  
Sara Di Benedetto ◽  
Lynne M. Roberts ◽  
Lorenzo Frigerio

BioTechniques ◽  
2021 ◽  
Author(s):  
Armelle Roisin ◽  
Samuel Buchsbaum ◽  
Vincent Mocquet ◽  
Pierre Jalinot

The stability of intracellular proteins is highly variable, from a few minutes to several hours, and can be tightly regulated to respond to external and internal cellular environment changes. Several techniques can be used to study the stability of a specific protein, including pulse-chase labeling and blocking of translation. Another approach that has gained interest in recent years is fusing a protein of interest to a fluorescent reporter. In this report, the authors present a new version of this approach aimed at optimizing expression and comparison of the two reporter proteins. The authors show that the system works efficiently in various cells and can be useful for studying changes in protein stability and assessing the effects of drugs.


2021 ◽  
Author(s):  
Dorottya A. Simon ◽  
András Tálas ◽  
Péter I. Kulcsár ◽  
Ervin Welker

ABSTRACTPrime editing is a recently developed gene engineering tool that allows the introduction of short insertions, deletions or substitutions into the genome. However, the efficiency of prime editing, generally reaching around 10-30% editing, has not resembled its versatility. Here, Prime Editor Activity Reporter (PEAR), a sensitive fluorescent tool is introduced for the identification of single cells with prime editing activity. Possessing no background fluorescence, PEAR specifically reports on prime editing events in individual cells. By design, it ensures unrestricted flexibility for sequence variations in the full length of the target sequence. The application of PEAR as an enrichment marker of prime editing can increase the edited population by up to 70% and alleviate the burden of the otherwise time and labour consuming process of cloning of the correctly edited cells, therefore considerably improving the applicability of prime editing in fundamental research and biotechnological uses.


2019 ◽  
Author(s):  
Tyler Joseph Dause ◽  
Elizabeth Diana Kirby

SummaryTo manipulate target gene function in specific adult cell populations, tamoxifen-dependent CreERT2 is widely used to drive inducible, site-specific recombination of LoxP flanked sequences. In studies of cell autonomous target gene function, it is common practice to combine these CreERT2-lox systems with a ubiquitously-expressed stop-floxed fluorescent reporter gene to identify single cells supposedly undergoing target gene recombination. Here, we studied the reliability of using Cre-induced recombination of one gene to predict recombination in another gene at the single cell level in adult hippocampal neural stem and progenitor cells. Using two separate stop-floxed reporters plus a Nestin promoter-driven CreERT2, we found that, in individual cells, expression of one reporter was a poor predictor of expression of the other. These findings imply that use of stop-floxed reporters to investigate cell autonomous gene function is likely to lead to false conclusions because recombination in separate genes shows poor concordance in individual cells.


2019 ◽  
Vol 11 (4) ◽  
pp. 142-153 ◽  
Author(s):  
Ramesh Ramji ◽  
Amanda F Alexander ◽  
Andrés R Muñoz-Rojas ◽  
Laura N Kellman ◽  
Kathryn Miller-Jensen

Abstract Innate immune cells, including macrophages and dendritic cells, protect the host from pathogenic assaults in part through secretion of a program of cytokines and chemokines (C/Cs). Cell-to-cell variability in C/C secretion appears to contribute to the regulation of the immune response, but the sources of secretion variability are largely unknown. To begin to track the biological sources that control secretion variability, we developed and validated a microfluidic device to integrate live-cell imaging of fluorescent reporter proteins with a single-cell assay of protein secretion. We used this device to image NF-κB RelA nuclear translocation dynamics and Tnf transcription dynamics in macrophages in response to stimulation with the bacterial component lipopolysaccharide (LPS), followed by quantification of secretion of TNF, CCL2, CCL3, and CCL5. We found that the timing of the initial peak of RelA signaling in part determined the relative level of TNF and CCL3 secretion, but not CCL2 and CCL5 secretion. Our results support evidence that differences in timing across cell processes partly account for cell-to-cell variability in downstream responses, but that other factors introduce variability at each biological step.


2008 ◽  
Vol 14 (S2) ◽  
pp. 722-723
Author(s):  
L Le Roux ◽  
D Maxwell ◽  
D Schellingerhout ◽  
A Volgin ◽  
J Gelovani

Extended abstract of a paper presented at Microscopy and Microanalysis 2008 in Albuquerque, New Mexico, USA, August 3 – August 7, 2008


2011 ◽  
Vol 2011 ◽  
pp. 1-12 ◽  
Author(s):  
Mark Parrish ◽  
Jay Unruh ◽  
Robb Krumlauf

Bacterial Artificial Chromosomes (BACs) are vital tools in mouse genomic analyses because of their ability to propagate large inserts. The size of these constructs, however, prevents the use of conventional molecular biology techniques for modification and manipulation. Techniques such as recombineering and Cre/Lox methodologies have thus become heavily relied upon for such purposes. In this work, we investigate the applicability of Lox variant sites for serial and/or simultaneous manipulations of BACs. We show that Lox spacer mutants are very specific, and inverted repeat variants reduce Lox reaction rates through reducing the affinity of Cre for the site, while retaining some functionality. Employing these methods, we produced serial modifications encompassing four independent changes which generated a mouse HoxB BAC with fluorescent reporter proteins inserted into four adjacent Hox genes. We also generated specific, simultaneous deletions using combinations of spacer variants and inverted repeat variants. These techniques will facilitate BAC manipulations and open a new repertoire of methods for BAC and genome manipulation.


ACS Nano ◽  
2008 ◽  
Vol 2 (1) ◽  
pp. 19-24 ◽  
Author(s):  
Honghao Sun ◽  
Anne Marie Scharff-Poulsen ◽  
Hong Gu ◽  
Iver Jakobsen ◽  
Jens M. Kossmann ◽  
...  

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