scholarly journals A Deep Learning Segmentation Approach in Free-Breathing Real-Time Cardiac Magnetic Resonance Imaging

2019 ◽  
Vol 2019 ◽  
pp. 1-12 ◽  
Author(s):  
Fan Yang ◽  
Yan Zhang ◽  
Pinggui Lei ◽  
Lihui Wang ◽  
Yuehong Miao ◽  
...  
Keyword(s):  
Deep Learning ◽  
Cardiac Magnetic Resonance ◽  
Magnetic Resonance ◽  
Cardiac Function ◽  
Data Augmentation ◽  
Function Analysis ◽  
Free Breathing ◽  
Blood Pool ◽  
Training Time ◽  
Segmentation Approach

Objectives. The purpose of this study was to segment the left ventricle (LV) blood pool, LV myocardium, and right ventricle (RV) blood pool of end-diastole and end-systole frames in free-breathing cardiac magnetic resonance (CMR) imaging. Automatic and accurate segmentation of cardiac structures could reduce the postprocessing time of cardiac function analysis. Method. We proposed a novel deep learning network using a residual block for the segmentation of the heart and a random data augmentation strategy to reduce the training time and the problem of overfitting. Automated cardiac diagnosis challenge (ACDC) data were used for training, and the free-breathing CMR data were used for validation and testing. Results. The average Dice was 0.919 (LV), 0.806 (myocardium), and 0.818 (RV). The average IoU was 0.860 (LV), 0.699 (myocardium), and 0.761 (RV). Conclusions. The proposed method may aid in the segmentation of cardiac images and improves the postprocessing efficiency of cardiac function analysis.

scholarly journals 70 Deep learning to diagnose cardiac amyloidosis from cardiac magnetic resonance findings

2020 ◽  
Vol 22 (Supplement_N) ◽  
pp. N116-N130
Author(s):  
Alberto Aimo ◽  
Nicola Martini ◽  
Andrea Barison ◽  
Daniele Della Latta ◽  
Giuseppe Vergaro ◽  
...  
Keyword(s):  
Deep Learning ◽  
Cardiac Magnetic Resonance ◽  
Magnetic Resonance ◽  
Cardiac Amyloidosis ◽  
Diagnostic Yield ◽  
Area Under The Curve ◽  
Blood Pool ◽  
Left Ventricular ◽  
Blood Dyscrasia ◽  
Test Accuracy

Abstract Aims Cardiac magnetic resonance (CMR) is part of the diagnostic work-up for cardiac amyloidosis (CA). Deep learning (DL) is an application of artificial intelligence that may allow to automatically analyze CMR findings and establish the likelihood of CA. Methods and results 1.5 T CMR was performed in 187 subjects with suspected CA (n = 92, 49% with unexplained left ventricular—LV—hypertrophy; n = 95, 51% with blood dyscrasia and suspected light-chain amyloidosis). Patients were randomly assigned to the training (n = 121, 65%), validation (n = 28, 15%), and testing subgroups (n = 38, 20%). Short axis (SA), 2-chamber (2 C), 4-chamber (4 C) late gadolinium enhancement (LGE) images were evaluated by 3 networks (DL algorithms). The tags “amyloidosis present” or “absent” were attributed when the average probability of CA from the 3 networks was ≥50% or < 50%, respectively. The DL strategy was compared to a machine learning (ML) algorithm considering all manually extracted features (LV volumes, mass and function, LGE pattern, early blood-pool darkening, pericardial and pleural effusion, etc.), to reproduce exam reading by an experienced operator. The DL strategy displayed good diagnostic accuracy (84%), with an area under the curve (AUC) of 0.96. The precision (positive predictive value), recall score (sensitivity), and F1 score (a measure of test accuracy) were 78%, 94%, and 86% respectively. A ML algorithm considering all CMR features had a similar diagnostic yield to DL strategy (AUC 0.93 vs. 0.96; p = 0.45). Conclusion A DL approach evaluating LGE acquisitions displayed a similar diagnostic performance for CA to a ML-based approach, which simulates CMR reading by experienced operators.

Cardiac Magnetic Resonance Blood Pool Contrast Agents

2007 ◽  
Vol 3 (2) ◽  
pp. 38
Author(s):  
Covadonga Fernández-Golfín ◽  
José Luis Zamorano ◽  
◽  
Keyword(s):  
Cardiac Magnetic Resonance ◽  
Magnetic Resonance ◽  
Contrast Agents ◽  
Blood Pool ◽  
Blood Pool Contrast Agents

scholarly journals Deep Learning of COVID-19 Chest X-Rays: New Models or Fine Tuning?

2020 ◽  
Author(s):  
Tuan Pham
Keyword(s):  
Deep Learning ◽  
High Performance ◽  
Data Augmentation ◽  
Dominant Role ◽  
Care Center ◽  
Characteristic Curve ◽  
Fine Tuning ◽  
Urgent Care ◽  
X Rays ◽  
Training Time

Chest X-rays have been found to be very promising for assessing COVID-19 patients, especially for resolving emergency-department and urgent-care-center overcapacity. Deep-learning (DL) methods in artificial intelligence (AI) play a dominant role as high-performance classifiers in the detection of the disease using chest X-rays. While many new DL models have been being developed for this purpose, this study aimed to investigate the fine tuning of pretrained convolutional neural networks (CNNs) for the classification of COVID-19 using chest X-rays. Three pretrained CNNs, which are AlexNet, GoogleNet, and SqueezeNet, were selected and fine-tuned without data augmentation to carry out 2-class and 3-class classification tasks using 3 public chest X-ray databases. In comparison with other recently developed DL models, the 3 pretrained CNNs achieved very high classification results in terms of accuracy, sensitivity, specificity, precision, F1 score, and area under the receiver-operating-characteristic curve. AlexNet, GoogleNet, and SqueezeNet require the least training time among pretrained DL models, but with suitable selection of training parameters, excellent classification results can be achieved without data augmentation by these networks. The findings contribute to the urgent need for harnessing the pandemic by facilitating the deployment of AI tools that are fully automated and readily available in the public domain for rapid implementation.

scholarly journals Deep Learning to Estimate Cardiac Magnetic Resonance-Derived Left Ventricular Mass

2020 ◽  
Author(s):  
Shaan Khurshid ◽  
Samuel Friedman ◽  
James P. Pirruccello ◽  
Paolo Di Achille ◽  
Nathaniel Diamant ◽  
...  
Keyword(s):  
Deep Learning ◽  
Cardiac Magnetic Resonance ◽  
Magnetic Resonance ◽  
Open Source ◽  
Pearson Correlation ◽  
Absolute Error ◽  
Learning Model ◽  
Left Ventricular ◽  
Lv Mass ◽  
Deep Learning Model

ABSTRACTBackgroundCardiac magnetic resonance (CMR) is the gold standard for left ventricular hypertrophy (LVH) diagnosis. CMR-derived LV mass can be estimated using proprietary algorithms (e.g., inlineVF), but their accuracy and availability may be limited.ObjectiveTo develop an open-source deep learning model to estimate CMR-derived LV mass.MethodsWithin participants of the UK Biobank prospective cohort undergoing CMR, we trained two convolutional neural networks to estimate LV mass. The first (ML4Hreg) performed regression informed by manually labeled LV mass (available in 5,065 individuals), while the second (ML4Hseg) performed LV segmentation informed by inlineVF contours. We compared ML4Hreg, ML4Hseg, and inlineVF against manually labeled LV mass within an independent holdout set using Pearson correlation and mean absolute error (MAE). We assessed associations between CMR-derived LVH and prevalent cardiovascular disease using logistic regression adjusted for age and sex.ResultsWe generated CMR-derived LV mass estimates within 38,574 individuals. Among 891 individuals in the holdout set, ML4Hseg reproduced manually labeled LV mass more accurately (r=0.864, 95% CI 0.847-0.880; MAE 10.41g, 95% CI 9.82-10.99) than ML4Hreg (r=0.843, 95% CI 0.823-0.861; MAE 10.51, 95% CI 9.86-11.15, p=0.01) and inlineVF (r=0.795, 95% CI 0.770-0.818; MAE 14.30, 95% CI 13.46-11.01, p<0.01). LVH defined using ML4Hseg demonstrated the strongest associations with hypertension (odds ratio 2.76, 95% CI 2.51-3.04), atrial fibrillation (1.75, 95% CI 1.37-2.20), and heart failure (4.53, 95% CI 3.16-6.33).ConclusionsML4Hseg is an open-source deep learning model providing automated quantification of CMR-derived LV mass. Deep learning models characterizing cardiac structure may facilitate broad cardiovascular discovery.

Sign in / Sign up

Export Citation Format

Share Document