scholarly journals Regional radiomics similarity networks (R2SNs) in the human brain: reproducibility, small-world properties and a biological basis

2021 ◽  
pp. 1-30
Author(s):  
Kun Zhao ◽  
Qiang Zheng ◽  
Tongtong Che ◽  
Martin Dyrba ◽  
Qiongling Li ◽  
...  

Abstract A structural covariance network (SCN) has been used successfully in structural magnetic resonance imaging (sMRI) studies. However, most SCNs have been constructed by a unitary marker that is insensitive for discriminating different disease phases. The aim of this study was to devise a novel regional radiomics similarity network (R2SN) that could provide more comprehensive information in morphological network analysis. R2SNs were constructed by computing the Pearson correlations between the radiomics features extracted from any pair of regions for each subject. We further assessed the small-world properties of R2SNs, and we evaluated the reproducibility in different datasets and through test-retest analysis. The relationships between the R2SNs and general intelligence/interregional coexpression of enriched genes were also explored. R2SNs could be replicated in different datasets, regardless of the use of different feature subsets. R2SNs showed high reproducibility in the test-retest analysis (intraclass correlation coefficient >0.7). In addition, the small-word property (σ>2) and the high correlation between gene expression (R=0.29, P<0.001) and general intelligence were determined for R2SNs. Furthermore, the results have also been repeated in the Brainnetome atlas. R2SNs provide a novel, reliable and biologically plausible method to understand human morphological covariance based on sMRI.

2020 ◽  
Author(s):  
Kun Zhao ◽  
Qiang Zheng ◽  
Tongtong Che ◽  
Martin Dyrba ◽  
Qiongling Li ◽  
...  

Background: A structural covariance network (SCN) has been used successfully to structural magnetic resonance imaging (MRI) studies. However, most SCNs were constructed by a unitary marker that was insensitive for discriminating different disease phases. The aim of this study was to devise a novel regional radiomics similarity network (R2SN) that could provide more comprehensive information in morphological network analysis. Methods: R2SNs were constructed by computing the Pearson correlations between the radiomics features extracted from any pair of regions for each subject. We further assessed the small-world property of R2SNs using the graph theory method, and we evaluated the reproducibility in different datasets and the reliability of the R2SNs through test-retest analysis. The relationship between the R2SNs and interregional coexpression of enriched genes was also explored, as well as the relationship with general intelligence. Results: R2SNs could be replicated in different datasets, regardless of the use of different feature subsets. R2SNs showed high reliability in the test-retest analysis (intraclass correlation coefficient (ICC)>0.7). In addition, the small-word property (σ>2) and the high correlation between gene expression (R=0.24, P<0.001) and general intelligence were determined for R2SNs. Conclusion: R2SNs provides a novel, reliable, and biologically plausible method to understand human morphological covariance based on structural MRI.


2021 ◽  
Vol 32 ◽  
pp. 102830
Author(s):  
Lenka Zacková ◽  
Martin Jáni ◽  
Milan Brázdil ◽  
Yuliya S. Nikolova ◽  
Klára Marečková

Sign in / Sign up

Export Citation Format

Share Document