First comprehensive insights into nuclear and mitochondrial DNA based population structure of Near East mountain brook newts (Salamandridae: genus Neurergus) suggest the resurrection of Neurergus derjugini

2014 ◽  
Vol 35 (2) ◽  
pp. 173-187 ◽  
Author(s):  
Ralf Hendrix ◽  
Jürgen Fleck ◽  
Willi Schneider ◽  
Christoph Schneider ◽  
Daniel Geller ◽  
...  

Due to their extraordinary coloration, mountain brook newts of the genus Neurergus found in the Near East have fascinated herpetologists since their initial description more than 150 years ago. Although the monophyly of Neurergus newts within the Salamandridae has been unambiguously shown for mitochondrial genes, and recent comprehensive molecular phylogenies placed Neurergus as a sister taxon of banded newts (genus Ommatotriton), we know almost nothing about the structure and relatedness of populations at the intraspecific level. In this study, we therefore analysed sequence variation of a mitochondrial DNA segment (covering a partial region of the control region and the 12S ribosomal RNA) from more than 100 individuals and of two nuclear genes (KIAA and SACS) for a representative subset of individuals originating from nine distinct populations, representing N. strauchii, N. crocatus and N. microspilotus. We also studied individuals of N. derjugini, a taxon that has long been synonymized as N. crocatus, and of which individuals have not been accessible to the scientific community since its original description in 1916. Our results suggest high genetic diversity of populations within species for the mitochondrial DNA marker, while the resolution of applied nuclear genes did not go beyond the level of species. For N. strauchii and N. crocatus, two species that inhabit the largest geographic ranges within the genus, we found a high proportion of diversity both within and between populations for the mitochondrial control region. Individuals of N. microspilotus and N. derjugini only displayed considerable genetic differentiation for one nuclear gene (SACS), while only very little or none genetic differentiation could be found for the mitochondrial control region and the KIAA gene, respectively. As both taxa are also morphologically not well differentiated, we suggest on the basis of the current dataset to taxonomically synonymize N. microspilotus due to priority reasons as N. derjugini. It can be therefore concluded that the most accurate taxonomy of the genus Neurergus should consider N. crocatus, N. strauchii, N. kaiseri and N. derjugini as valid taxonomic units at the species level.

Scientifica ◽  
2016 ◽  
Vol 2016 ◽  
pp. 1-9 ◽  
Author(s):  
Rashmi Verma ◽  
Mahender Singh ◽  
Sudhir Kumar

The mitochondrial control region has been the first choice for examining the population structure but hypervariability and homoplasy have reduced its suitability. We analysed eight populations using control region for examining the population structure ofHilsa. Although the control region analysis revealed broad structuring between the Arabian Sea and Bay of Bengal (FST  0.0441,p<0.001) it was unable to detect structure among riverine populations. These results suggest that the markers used must be able to distinguish populations and control region has led to an underestimation of genetic differentiation among populations ofHilsa.


The Condor ◽  
2000 ◽  
Vol 102 (4) ◽  
pp. 871-880
Author(s):  
Christin L. Pruett ◽  
Scott E. Henke ◽  
Susan M. Tanksley ◽  
Michael F. Small ◽  
Kelly M. Hogan ◽  
...  

Abstract White-winged Doves (Zenaida asiatica) in Texas are separated into four subspecies primarily based on morphological variation. However, problems differentiating the subspecies by morphological measurements alone and a recent range expansion have led to questions about their systematic status and population structure. We evaluated both morphological characters and a 289 base-pair segment of the mitochondrial control region from 183 White-winged Doves taken from 31 locations in Texas, New Mexico, and Arizona. Twenty-seven variable base changes were observed, which resulted in 44 haplotypes. An analysis of haplotypes yielded little phylogenetic signal; however, analyses of haplotype frequencies indicated geographic heterogeneity between doves collected in the four historic subspecies ranges. Doves from the range expansion areas were intermediate in size and genetically homogenous. Morphological analyses suggested congruency between control region variation and body size. Our data support the recognition of two subspecies of White-winged Doves with a zone of intergradation in the range expansion areas. The dispersal of White-winged Doves into the expansion areas appears to be a congruent process by both subspecies.


2018 ◽  
Vol 18 (1) ◽  
pp. 3-15 ◽  
Author(s):  
Joanna Warzecha ◽  
Agnieszka Fornal ◽  
Maria Oczkowicz ◽  
Monika Bugno-Poniewierska

Abstract Mitochondrial DNA (mtDNA) is a molecular tool that is very effective in genetic research, including phylogenetic analysis. The non-coding region is the most variable fragment of mtDNA, showing variability in length and nucleobase composition and containing three domains: two hypervariable peripheral regions and the conserved domain (D-loop) in the middle. The Anseriformes are amongst the best studied avian groups, including approximately 150 species and containing geese, swans, ducks (Anatidae), the Magpie goose (Anseranatidae) and screamers (Anhimidae). The most numerous family is the Anatidae, appearing in close relationships within the phylogenetic branches of the species. There are differences between the non-coding region of the Anatidae in comparison to other avian control regions. In the article presented below the control region sequences and the phylogeny of the Anatidae were reviewed.


Crustaceana ◽  
2020 ◽  
Vol 93 (8) ◽  
pp. 931-955
Author(s):  
Natalia Sukhikh ◽  
Ekaterina Abramova ◽  
Anne-Catherine Holl ◽  
Sami Souissi ◽  
Victor Alekseev

Abstract Eurytemora represents a challenging group of species due to their taxonomy, in particular the former group of cryptic species known as E. affinis sensu lato. In this paper, we analyse DNA sequences that are all available in GenBank, along with our own data on the genus Eurytemora. For this study, a set of mitochondrial and nuclear genes (CO1, nITS and 18SrRNA) was used. In total 543 sequences were analysed (437 CO1; 54 nITS; 52 18SrRNA). However, this work is mainly meta-analytical, and only 67 sequences from unstudied earlier populations or species were obtained specifically for this work to analyse the genetic differentiation of the morphologically described species. We found that relatively young species of the E. affinis complex are different from each other in the CO1 and nITS genes, but not in the conservative 18SrRNA nuclear gene. Nucleotide differences among affinis-group species in the CO1 gene are 9.4-11.8%; in the nITS genes, 1.1-5.0%. At the same time, all other studied Eurytemora species have significant differences from each other in the CO1 and nITS genes, as well as in 18SrRNA. The level of differences among the species is 13.2-19.2% for the CO1 gene, 18.0-27.6.2% for nITS genes, and 0.4-1.8% for the 18SrRNA gene.


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