Early divergence of an Azorean endemic species in the moss genus Rhynchostegiella (Brachytheciaceae)

Phytotaxa ◽  
2015 ◽  
Vol 210 (1) ◽  
pp. 60 ◽  
Author(s):  
Alain Vanderpoorten ◽  
Jairo PatiÑo ◽  
Gerard Dirkse ◽  
TOM BLOCKEEL ◽  
Lars Hedenäs
Keyword(s):  
Endemic Species ◽  
Taxonomic Revision ◽  
Distinct Species ◽  
Recent Common Ancestor ◽  
Width Ratio ◽  
Most Recent Common Ancestor ◽  
Molecular Phylogenetic ◽  
Variable Species ◽  
The One ◽  
A New Species

Using the moss genus Rhynchostegiella (Brachytheciaceae) as a model, we address the question of whether taxonomic shortcomings account for the extremely low rates of endemism reported in the Azorean bryophyte flora. Eight accessions initially assigned to three of the four previously reported species in the Azores were identified as a distinct species using the Generalized Mixed Yule Coalescent method in the context of a molecular phylogenetic analysis of the genus. Rhynchostegiella azorica sp. nov. is therefore described as a new species that is endemic to the Azores. Its morphological features intergrade with those observed in other species, with a seta that ranges from almost smooth to rough; a length to width ratio of the laminal cells that matches the one of the R. curviseta group; but a leaf apex that is typical of the R. tenella group. This suggests that previous reports of four Rhynchostegiella species from Azores are erroneous and that a single, morphologically variable species, R. azorica, occurs in the archipelago. Rhynchostegiella azorica is sister to the remainder of the species of the genus, whose most recent common ancestor was dated at 4–20 Ma. This points to a more ancient origin in comparison with other Macaronesian endemic species of the genus. The unexpected discovery of an Azorean endemic species in Rhynchostegiella suggests that patterns of endemicity in the Azorean bryophyte flora are not well estimated from traditional taxonomic knowledge and point to the necessity of an extensive integrative taxonomic revision.

scholarly journals Molecular evolution of dengue virus types 1 and 4 in Korean travelers

2021 ◽  
Vol 166 (4) ◽  
pp. 1103-1112
Author(s):  
Eun-Ha Hwang ◽  
Green Kim ◽  
Hoyin Chung ◽  
Hanseul Oh ◽  
Jong-Hwan Park ◽  
...  
Keyword(s):  
Dengue Virus ◽  
Positive Selection ◽  
Recent Common Ancestor ◽  
Coding Region ◽  
Genotype I ◽  
Most Recent Common Ancestor ◽  
Evolutionary Features ◽  
Molecular Phylogenetic ◽  
First Time ◽  
Global Travel

AbstractDengue virus (DV) is a mosquito-borne virus that is endemic to many tropical and subtropical areas. Recently, the annual incidence of DV infection has increased worldwide, including in Korea, due to global warming and increased global travel. We therefore sought to characterize the molecular and evolutionary features of DV-1 and DV-4 isolated from Korean overseas travelers. We used phylogenetic analysis based on the full coding region to classify isolates of DV-1 in Korea into genotype I (43251, KP406802), genotype IV (KP406803), and genotype V (KP406801). In addition, we found that strains of DV-4 belonged to genotype I (KP406806) and genotype II (43257). Evidence of positive selection in DV-1 strains was identified in the C, prM, NS2A, and NS5 proteins, whereas DV-4 showed positive selection only in the non-structural proteins NS2A, NS3, and NS5. The substitution rates per site per year were 5.58 × 10-4 and 6.72 × 10-4 for DV-1 and DV-4, respectively, and the time of the most recent common ancestor was determined using the Bayesian skyline coalescent method. In this study, the molecular, phylogenetic, and evolutionary characteristics of Korean DV-1 and DV-4 isolates were evaluated for the first time.

scholarly journals Taxonomic revision of Russula subsection Amoeninae from South Korea

MycoKeys ◽  
2020 ◽  
Vol 75 ◽  
pp. 1-29
Author(s):  
Komsit Wisitrassameewong ◽  
Myung Soo Park ◽  
Hyun Lee ◽  
Aniket Ghosh ◽  
Kanad Das ◽  
...  
Keyword(s):  
New Species ◽  
South Korea ◽  
Central America ◽  
North American ◽  
Internal Transcribed Spacer ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Molecular Phylogenetic ◽  
Pileus Surface ◽  
A New Species

Russula subsection Amoeninae is morphologically defined by a dry velvety pileus surface, a complete absence of cystidia with heteromorphous contents in all tissues, and spores without amyloid suprahilar spot. Thirty-four species within subsection Amoeninae have been published worldwide. Although most Russula species in South Korea have been assigned European or North American names, recent molecular studies have shown that Russula species from different continents are not conspecific. Therefore, the present study aims to: 1) define which species of Russula subsection Amoeninae occur on each continent using molecular phylogenetic analyses; 2) revise the taxonomy of Korean Amoeninae. The phylogenetic analyses using the internal transcribed spacer (ITS) and multilocus sequences showed that subsection Amoeninae is monophyletic within subgenus Heterophyllidiae section Heterophyllae. A total of 21 Russula subsection Amoeninae species were confirmed from Asia, Australia, Europe, North America, and Central America, and species from different continents formed separate clades. Three species were recognized from South Korea and were clearly separated from the European and North American species. These species are R. bella, also reported from Japan, a new species described herein, Russula orientipurpurea, and a new species undescribed due to insufficient material.

scholarly journals How the past impacts the future: modelling the performance of evolutionarily distinct mammals through time

2019 ◽  
Vol 374 (1788) ◽  
pp. 20190210 ◽  
Author(s):  
D. J. Bennett ◽  
M. D. Sutton ◽  
S. T. Turvey
Keyword(s):  
Fossil Record ◽  
Distinct Species ◽  
Performance Impact ◽  
Deep Time ◽  
The Past ◽  
Living Fossils ◽  
Measuring Change ◽  
Molecular Phylogenetic ◽  
Time Changes ◽  
The One

How does past evolutionary performance impact future evolutionary performance? This is an important question not just for macroevolutionary biologists who wish to chart the phenomena that describe deep-time changes in biodiversity but also for conservation biologists, as evolutionarily distinct species—which may be deemed ‘low-performing’ in our current era—are increasingly the focus of conservation efforts. Contrasting hypotheses exist to account for the history and future of evolutionarily distinct species: on the one hand, they may be relicts of large radiations, potentially ‘doomed’ to extinction; or they may be slow-evolving, ‘living fossils’, likely neither to speciate nor go extinct; or they may be seeds of future radiations. Here, we attempt to test these hypotheses in Mammalia by combining a molecular phylogenetic supertree with fossil record occurrences and measuring change in evolutionary distinctness (ED) at different time slices. With these time slices, we modelled future ED as a function of past ED. We find that past evolutionary performance does indeed have an impact on future evolutionary performance: the most evolutionarily isolated clades tend to become more evolutionarily distinct with time, indicating that low-performing clades tend to remain low-performing throughout their evolutionary history. This article is part of a discussion meeting issue ‘The past is a foreign country: how much can the fossil record actually inform conservation?’

Pleurotheciella nilotica sp. nov. (Pleurotheciales, Ascomycota) from freshwater habitats in Egypt

Nova Hedwigia ◽  
2020 ◽  
Vol 110 (1) ◽  
pp. 91-98
Author(s):  
Faten A. Abdel-Aziz ◽  
Ali H. Bahkali ◽  
Abdallah M. Elgorban ◽  
Mohamed A. Abdel-Wahab
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Distinct Species ◽  
Lsu Rdna ◽  
River Nile ◽  
Basal Clade ◽  
Molecular Phylogenetic ◽  
Freshwater Habitats ◽  
A New Species

A new species, Pleurotheciella nilotica is described and illustrated from the River Nile, Sohag, Egypt. Molecular phylogenetic analyses of the combined SSU and LSU rDNA placed the new species within Pleurotheciella as a phylogenetically distinct species. P. nilotica formed a basal clade to a node containing P. krabiensis and P.tropica. The new species is characterized by its conidial dimensions being smaller than those recorded in the eleven described species of Pleurotheciella.

Adenophora xiaoxiensis (Campanulaceae), an Endangered Species from China

Phytotaxa ◽  
2019 ◽  
Vol 402 (2) ◽  
pp. 88
Author(s):  
XIN-YU YI ◽  
DAN XIE ◽  
CHENG ZHANG ◽  
YU-QIN WANG ◽  
YONG-QUAN KANG ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Distinct Species ◽  
Red List ◽  
Central China ◽  
International Union ◽  
Restricted Area ◽  
Molecular Phylogenetic ◽  
Red List Categories ◽  
A New Species

Adenophora xiaoxiensis (Campanulaceae), a new species from central China is described and illustrated. Molecular phylogenetic analysis (based on nuclear ribosomal ITS and the plastid regions trnL-F and matK) and morphology support recognition of A. xiaoxiensis as a distinct species sister to A. wilsonii. Adenophora xiaoxiensis has ovate-elliptic to broadly lanceolate cauline leaves with irregularly biserrate margins, triangular-ovate calyx lobes with 1-3 pairs subulate or linear teeth and a white corolla. About 70 individuals were observed in a restricted area of less than 100 m2. The habitat could be easily disturbed or destroyed, thus, we assessed it as endangered (EN), based on Criteria D of the International Union for Conservation of Nature Red List Categories.

scholarly journals Early evolution of the angiosperm clade Asteraceae in the Cretaceous of Antarctica

2015 ◽  
Vol 112 (35) ◽  
pp. 10989-10994 ◽  
Author(s):  
Viviana D. Barreda ◽  
Luis Palazzesi ◽  
Maria C. Tellería ◽  
Eduardo B. Olivero ◽  
J. Ian Raine ◽  
...  
Keyword(s):  
Pollen Grains ◽  
Terrestrial Ecosystems ◽  
Flowering Plants ◽  
Flowering Plant ◽  
Recent Common Ancestor ◽  
Time Interval ◽  
Most Recent Common Ancestor ◽  
The Family ◽  
Dramatic Rise ◽  
Molecular Phylogenetic

The Asteraceae (sunflowers and daisies) are the most diverse family of flowering plants. Despite their prominent role in extant terrestrial ecosystems, the early evolutionary history of this family remains poorly understood. Here we report the discovery of a number of fossil pollen grains preserved in dinosaur-bearing deposits from the Late Cretaceous of Antarctica that drastically pushes back the timing of assumed origin of the family. Reliably dated to ∼76–66 Mya, these specimens are about 20 million years older than previously known records for the Asteraceae. Using a phylogenetic approach, we interpreted these fossil specimens as members of an extinct early diverging clade of the family, associated with subfamily Barnadesioideae. Based on a molecular phylogenetic tree calibrated using fossils, including the ones reported here, we estimated that the most recent common ancestor of the family lived at least 80 Mya in Gondwana, well before the thermal and biogeographical isolation of Antarctica. Most of the early diverging lineages of the family originated in a narrow time interval after the K/P boundary, 60–50 Mya, coinciding with a pronounced climatic warming during the Late Paleocene and Early Eocene, and the scene of a dramatic rise in flowering plant diversity. Our age estimates reduce earlier discrepancies between the age of the fossil record and previous molecular estimates for the origin of the family, bearing important implications in the evolution of flowering plants in general.

A taxonomic revision of Monolepta pallidula species group in Taiwan (Coleoptera: Chrysomelidae: Galerucinae)

Zootaxa ◽  
2009 ◽  
Vol 2170 (1) ◽  
pp. 15-27 ◽  
Author(s):  
CHI-FENG LEE
Keyword(s):  
New Species ◽  
Taxonomic Revision ◽  
Distinct Species ◽  
Species Group ◽  
Junior Synonym ◽  
Color Variation ◽  
A New Species

The species belonging to the Monolepta pallidula species group are revised. Two species are recognized as valid: Monolepta sauteri Chûjô and M. kuroheri Kimoto. Taiwanese populations of Monolepta pallidula (Baly) are a distinct species different from the true M. pallidula. Thus Monolepta gracilipes Chûjô, a junior synonym of M. pallidula from Taiwan, is an available name and should be reinstated. A new species, Monolepta tsoui, is described with delimitation of color variation from its allied species, M. gracilipes. A lectotype is designated for Monolepta gracilipes Chûjô. A key to the species of the species group is provided.

scholarly journals Teloschistaceae (lichenized Ascomycota) from the Galapagos Islands: a phylogenetic revision based on morphological, anatomical, chemical, and molecular data

2020 ◽  
pp. 515-576
Author(s):  
Frank Bungartz ◽  
Ulrik Søchting ◽  
Ulf Arup
Keyword(s):  
New Species ◽  
Taxonomic Revision ◽  
Molecular Data ◽  
New Combinations ◽  
Secondary Chemistry ◽  
Phylogenetic Affiliation ◽  
Molecular Phylogenetic ◽  
Phylogenetic Revision ◽  
A New Species ◽  
Hplc Analyses

The lichen family Teloschistaceae from the Galapagos is revised. Most of the species belong to the Caloplacoideae, two to Teloschistoideae and a few to Xanthorioideae, three subfamilies not validly published, which is remedied here. Four different datasets were analyzed using Bayesian inference. For the bulk of the species, a combined dataset of nrITS, nrLSU and mrSSU was analyzed. Additionally, three analyses were performed using nrITS to further investigate phylogenetic relationships within and between species in each subfamily, and in the genera Xanthomendoza and Squamulea. Four new genera are described: Lacrima, Oceanoplaca, Phaeoplaca, Sucioplaca. Twenty-four species are reported, of which ten are new to science: Caloplaca nigra, Lacrima galapagoensis, Oceanoplaca chemoisidiosa, O. sideritoides, Phaeoplaca tortuca, Squamulea chelonia, S. humboldtiana, S. osseophila, S. oceanica, and Xanthomendoza leoncita. Several new combinations are proposed and three species of Xanthomendoza are reduced to synonymy. Several new combinations and species placed into synonymy do not occur in the Galapagos, but are treated as a consequence of our taxonomic revision. Morphology, anatomy, secondary chemistry, distribution and molecular phylogenetic affiliation are presented for each species and a key is provided. Eight different chemical patterns are quantitatively described based on HPLC analyses. The new genus Lacrima includes L. galapagoensis, a species without vegetative propagules, and two densely isidiate species, L. epiphora and L. aphanotripta that are morphologically similar to ‘Caloplaca’ wrightii. The only species of Galapagos Teloschistaceae that contains xanthones is placed into Huneckia. Oceanoplaca includes two species with the new anthraquinone isidiosin, O. isidiosa and O. chemoisidiosa, while a third species, O. sideritoides, does not contain this secondary metabolite. Phaeoplaca camptidia has previously been reported from Galapagos, but our phylogenetic analysis suggests that it is a new species, here named P. tortuca. An isolated position is occupied by ‘Caloplaca’ diplacia, which we place in it its own monotypic genus Sucioplaca. Some Galapagos Teloschistaceae can be considered a ‘residue’ of unresolved Caloplaca s.l., i.e. the corticolous C. floridana is possibly related to the saxicolous C. nigra, while C. cupulifera can currently not be placed. Squamulea remains particularly problematic and includes S. phyllidizans, that is nested among otherwise unresolved Squamulea species. Based on molecular data, S. phyllidizans is close to ‘Huriella’. ‘Huriella’ flakusii, described from Peru, is confirmed to occur in the Galapagos and the genus is reduced to synonymy with Squamulea. The Squamulea squamosa/subsoluta group remains largely unresolved, but the new species S. chelonia, S. humboldtiana, S. oceanica, and S. osseophila are phylogenetically distinct. Foliose Teloschistaceae are represented only by one species, described as Xanthomendoza leoncita, while the only fruticose species, Teloschistes chrysophthalmus and T. flavicans, are cosmopolitan.

The Mediterranean species of genus Loxosceles Heineken & Lowe, 1832 (Araneae: Sicariidae): Loxosceles imazighen sp. n. from Morocco and first description of the female of L. mrazig Ribera & Planas, 2009 from Tunisia

Zootaxa ◽  
2021 ◽  
Vol 5071 (3) ◽  
pp. 326-348
Author(s):  
MARC MASSA ◽  
CARLES RIBERA
Keyword(s):  
New Species ◽  
Canary Islands ◽  
Endemic Species ◽  
Phylogenetic Analyses ◽  
Morphological Variability ◽  
Mediterranean Species ◽  
Molecular Phylogenetic ◽  
Different Populations ◽  
First Time ◽  
A New Species

The aim of this paper is to describe a new species of the genus Loxosceles Heineken & Lowe, 1832 from Morocco, Loxosceles imazighen sp. n., and to describe for the first time a female of Loxoxceles mrazig Ribera & Planas, 2009 from Tunisia. Both species live in xeric and desert environments and are located in southern Atlas Range. Molecular phylogenetic analyses, using mitochondrial (cox1, 16S) and nuclear (H3, 28S) markers, revel that these species are closely related and that they constitute a separate evolutionary lineage of L. rufescens (Dufour, 1820) and of the set of endemic species of the Canary Islands. L. imazighen sp. n. differs from L. mrazig, the closest species morphologically and geographically, in the shapes and proportions of the male palpal tibia and the shapes and dispositions of the female seminal receptacles. In addition, L. mrazig females show morphological variability in their genitalia, mainly in the inner and outer lobes. Although that variability cannot be associated with different populations, since it also appears within individual populations, and is not related to genetic or geographic distances.  

Towards uncovering evolution of lineage-specific calcium oxalate crystal patterns in Piperales

Botany ◽  
2015 ◽  
Vol 93 (3) ◽  
pp. 159-169 ◽  
Author(s):  
Harry T. Horner ◽  
Marie-Stéphanie Samain ◽  
Sarah T. Wagner ◽  
Stefan Wanke
Keyword(s):  
Calcium Oxalate ◽  
Recent Common Ancestor ◽  
Calcium Oxalate Crystal ◽  
Character Reconstruction ◽  
Most Recent Common Ancestor ◽  
Molecular Phylogenetic ◽  
Crystal Type ◽  
Phylogenetic Hypotheses ◽  
Crystal Sand ◽  
Ancestral Character Reconstruction

Piperales is among the largest and most diverse angiosperm orders (>4000 species), occurring broadly in tropical and temperate habitats. Twenty-four of the species from 12 genera, representing all lineages of Piperales, except the holoparasitic Hydnoraceae, display a mixture of leaf calcium oxalate crystal types found in previous studies of the two genera of Piperaceae subfamily Piperoideae (Peperomia Ruiz & Pav. and Piper L.). Crystal macropatterns, a result of varying leaf anatomies and diverse habitats, are investigated in a comparative way by using clearings and recent molecular phylogenetic hypotheses to trace crystal types and macropattern evolution. Ancestral character reconstruction reveals that the most recent common ancestor of Piperales had either crystal sand or druses or both and that prisms, raphides, and styloids are derived from the ancestral crystal type(s). These results are also recovered for both the ancestors of the perianth-less and the perianth-bearing Piperales. Raphides or druses are found in the two other subfamilies of Piperaceae (Verhuellioideae and Zippelioideae). Asaraceae and Lactoridaceae display crystal sand, whereas Aristolochia L. (Aristolochiaceae) species display mainly druses. Our crystal investigation, combined with ancestral character reconstruction, suggests that styloids, raphides, and prisms are derived within Piperales from crystal sand or druses.

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