Contribution to the molecular phylogeny of Sciaridae (Diptera) with special attention to the genera Bradysia and Corynoptera

Zootaxa ◽  
2021 ◽  
Vol 4951 (2) ◽  
pp. 391-400
Author(s):  
WOLFGANG ARTHOFER ◽  
ANDREA GOLLNER ◽  
KAI HELLER ◽  
FLORIAN M. STEINER ◽  
BIRGIT C. SCHLICK-STEINER ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Maximum Likelihood ◽  
Molecular Phylogeny ◽  
Dna Markers ◽  
New Genus ◽  
Close Relation ◽  
Morphological Characters ◽  
Central European ◽  
The North ◽  
Per Gene

The systematics of the dipteran family Sciaridae is based mainly on morphological characters and has remained quite controversial. In this study, we used two mitochondrial DNA markers (CO1, 16S) and a nuclear one (28S) to take a glimpse into phylogenetic relationships of part of the North and Central European Sciaridae. A total of 91 species from 19 genera were analysed using Maximum Likelihood based phylogenetics (depending on the availability of valid sequences, 50–70 per gene). We strengthen the suggestion of the Chaetosciara group as an independent subfamily. Within the subfamily Megalosphyinae, two separate Bradysia clades were identified, suggesting a close relation between the genera Zygoneura, Austrosciara, and Scatopsciara. The genus Alpinosciara gen. n. is established to place the species of the former Corynoptera crassistylata group inside the subfamily Megalosphyinae. This new genus now includes 22 species. 

A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes

Zootaxa ◽  
2011 ◽  
Vol 2966 (1) ◽  
pp. 37 ◽  
Author(s):  
MILLICENT D. SANCIANGCO ◽  
LUIZ A. ROCHA ◽  
KENT E. CARPENTER
Keyword(s):  
Maximum Likelihood ◽  
Molecular Phylogeny ◽  
Strong Support ◽  
Morphological Characters ◽  
Cyt B ◽  
Bayesian Analyses ◽  
Mitochondrial Coi ◽  
Outgroup Species ◽  
Molecular Studies ◽  
Upper Jaw

We infer a phylogeny of haemulid genera using mitochondrial COI and Cyt b genes and nuclear RAG1, SH3PX3, and Plagl2 genes from 56 haemulid species representing 18 genera of the expanded haemulids (including the former inermiids) and ten outgroup species. Results from maximum parsimony, maximum likelihood, and Bayesian analyses show strong support for a monophyletic Haemulidae with the inclusion of Emmelichthyops atlanticus. The former inermiids did not form a clade indicating that the highly protrusible upper jaw specialization to planktivory evolved more than once within Haemulidae. The subfamilies Haemulinae and Plectorhinchinae, currently diagnosed by eight morphological characters, most notably the number of chin pores and the origin of the retractor dorsalis, are also recovered from these analyses with the Haemulinae sister to the Plectorhinchinae. Plectorhinchus is monophyletic only with the inclusion of Diagramma. Within the Haemulinae, Pomadasys and Conodon are polyphyletic. In addition, Anisotremus is monophyletic only with the inclusion of Genyatremus and Conodon nobilis, and Haemulon is monophyletic only with the inclusion of Xenistius. These results suggest that further morphological and molecular studies are needed to revise the limits of several haemulid genera.

scholarly journals Morpho-molecular diversity of Linocarpaceae (Chaetosphaeriales): Claviformispora gen. nov. from decaying branches of Phyllostachys heteroclada

MycoKeys ◽  
2020 ◽  
Vol 69 ◽  
pp. 113-129
Author(s):  
Xiu-Lan Xu ◽  
Chun-Lin Yang ◽  
Rajesh Jeewon ◽  
Dhanushka N. Wanasinghe ◽  
Ying-Gao Liu ◽  
...  
Keyword(s):  
Bayesian Inference ◽  
Maximum Likelihood ◽  
Molecular Diversity ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
New Taxon ◽  
Dna Sequence Data ◽  
Distinct Genus

In this paper, Claviformisporagen. nov. in Linocarpaceae is introduced from Phyllostachys heteroclada in Sichuan Province, China. The new genus is characterised by its distinct morphological characters, such as ostiole with periphyses, asci with a thick doughnut-shaped, J- apical ring and clavate ascospore without septum-like band and appendage. Maximum Likelihood and Bayesian Inference phylogenetic analyses, based on DNA sequence data from ITS, LSU, SSU and TEF-1α regions, provide further evidence that the fungus is a distinct genus within this family. The new genus is compared with similar genera, such as Linocarpon and Neolinocarpon. Descriptions, illustrations and notes are provided for the new taxon.

Molecular phylogeny of the spoonbills (Aves: Threskiornithidae) based on mitochondrial DNA

Zootaxa ◽  
2010 ◽  
Vol 2603 (1) ◽  
pp. 53 ◽  
Author(s):  
R. TERRY CHESSER ◽  
CAROL K. L. YEUNG ◽  
CHENG-TE YAO ◽  
XIU-HUA TIAN ◽  
SHOU-HSIEN LI
Keyword(s):  
Mitochondrial Dna ◽  
Maximum Likelihood ◽  
Molecular Phylogeny ◽  
Phylogenetic Trees ◽  
Strong Support ◽  
Sister Group ◽  
Molecular Data ◽  
Mitochondrial Genes ◽  
Bayesian Analyses ◽  
Limited Sampling

Spoonbills (genus Platalea) are a small group of wading birds, generally considered to constitute the subfamily Plataleinae (Aves: Threskiornithidae). We reconstructed phylogenetic relationships among the six species of spoonbills using variation in sequences of the mitochondrial genes ND2 and cytochrome b (total 1796 bp). Topologies of phylogenetic trees reconstructed using maximum likelihood, maximum parsimony, and Bayesian analyses were virtually identical and supported monophyly of the spoonbills. Most relationships within Platalea received strong support: P. minor and P. regia were closely related sister species, P. leucorodia was sister to the minor-regia clade, and P. alba was sister to the minor-regia-leucorodia clade. Relationships of P. flavipes and P. ajaja were less well resolved: these species either formed a clade that was sister to the four-species clade, or were successive sisters to this clade. This phylogeny is consistent with ideas of relatedness derived from spoonbill morphology. Our limited sampling of the Threskiornithinae (ibises), the putative sister group to the spoonbills, indicated that this group is paraphyletic, in agreement with previous molecular data; this suggests that separation of the Threskiornithidae into subfamilies Plataleinae and Threskiornithinae may not be warranted.

Delimitation of the segmented trapdoor spider genus Luthela gen. nov., with comments on the genus Sinothela from northern China (Araneae, Mesothelae, Liphistiidae)

Zootaxa ◽  
2022 ◽  
Vol 5091 (1) ◽  
pp. 131-154
Author(s):  
XIN XU ◽  
LI YU ◽  
FENGXIANG LIU ◽  
DAIQIN LI
Keyword(s):  
Type Species ◽  
New Genus ◽  
Taxonomic Revision ◽  
Northern China ◽  
Morphological Characters ◽  
Molecular Data ◽  
Male And Female ◽  
The North ◽  
The Status ◽  
Nomina Dubia

A new genus of the primitively segmented trapdoor spiders, which is endemic to the north of China, is described, Luthela gen. nov., and the status of Sinothela Haupt, 2003 and Sinothela sinensis (Bishop & Crosby, 1932) is discussed and both are treated as nomina dubia. The new genus Luthela gen. nov. is erected based on morphology and molecular data of the type species Luthela yiyuan sp. nov. A taxonomic revision of the new genus is given. Three Sinothela species are transferred to the new genus, L. luotianensis comb. nov. and L. schensiensis comb. nov. are redescribed using our newly collected specimens, include L. heyangensis comb. nov. as a junior synonym of L. schensiensis comb. nov., and describe six new species based on both male and female morphological characters: L. badong sp. nov., L. dengfeng sp. nov., L. handan sp. nov., L. taian sp. nov., L. yiyuan sp. nov., and L. yuncheng sp. nov.  

scholarly journals A phylogenetic framework for the North American bumblebee species of the subgenus Bombus sensu stricto (Bombus affinis, B. franklini, B. moderatus, B. occidentalis & B. terricola) based on mitochondrial DNA markers. (Hymenoptera: Apidae: Bombus).

2010 ◽  
Vol 60 (1) ◽  
pp. 229-242
Author(s):  
Andreas Bertsch ◽  
Martin Hrabé de Angelis ◽  
Gerhard K. H. Przemeck
Keyword(s):  
Mitochondrial Dna ◽  
Cytochrome Oxidase ◽  
North American ◽  
Dna Markers ◽  
Sensu Stricto ◽  
Bumblebee Species ◽  
The North ◽  
Phylogenetic Framework ◽  
Bombus Affinis

Königinnen der vier Taxa Bombus affinis, B. moderatus, B. occidentalis and B. terricola wurden an verschiedenen Orten quer durch Nordamerika gefangen. Zusätzlich wurden Männchen von B. franklini, B. occidentalis und B. terricola gesammelt. Mitochondriale Cytochrome Oxidase Untereinheit I (COI) von 25 Proben wurde sequenziert (Teilsequenzen 1005 bp Länge). Die Divergenz der Sequenzen zwischen den Taxa beträgt 30–50 Basen-Substitutionen und die Tamura-Nei Genetische Distanz 0.05–0.13, während innerhalb der Taxa die Divergenz nur 1 bis 2 Basen-Substitutionen beträgt und die Tamura-Nei Genetische Distanz 0.001–0.002. Da die COI Sequenzen keine Lücken aufweisen, können die einzelnen Nukleotide wie homologe Positionen verwendet werden. Jedes Taxon besitzt 8–20 eigene Substitutionen, die als dia­gnostische Positionen verwendet werden können, um das Taxon zu charakterisieren. Das Phylogramm zeigt drei klar getrennte Cluster: B. moderatus, konspezifisch mit der ostasiatischen B. albocinctus, das Artenpaar B. affinis – B. franklini locker verwandt mit der eurasiatischen B. lucorum, und das Artenpaar B. terricola – B. occidentalis ohne Beziehungen zu irgendwelchen Arten der Alten Welt.

scholarly journals A phylogenetic review of the North American band-winged grasshopper genus, Encoptolophus Scudder with description of Nebulatettix gen.n. (Orthoptera: Acrididae: Oedipodinae)

2012 ◽  
Vol 43 (2) ◽  
pp. 117-145 ◽  
Author(s):  
R. Antonio Gómez ◽  
David C. Lightfoot ◽  
Kelly B. Miller
Keyword(s):  
North American ◽  
New Genus ◽  
Cladistic Analysis ◽  
Morphological Characters ◽  
Mitochondrial Genes ◽  
12S Rrna ◽  
Parsimony Analysis ◽  
The North ◽  
Phenotypic Character ◽  
Combined Data

A taxonomic review of the North American band-winged grasshopper genusEncoptolophusScudder (Orthoptera: Acrididae: Oedipodinae) was conducted. This genus is hypothesized to be non-monophyletic following a cladistic analysis of the genera in theChortophagagenus group. We examined all species currently classified in this genus group for morphological characters and one behavioral character. The phenotypic character data were combined with three mitochondrial genes: cytochromecoxidase subunit II, 16S rRNA and 12S rRNA. A parsimony analysis was performed on the combined data resulting in two equally parsimonious trees.Encoptolophus, as historically defined, is resolved in three separate clades. The results support erection of a new genus,NebulatettixGómez, Lightfoot & Miller gen.n. to comprise one of the groups historically classified inEncoptolophus. In addition, we transfer the speciesEncoptolophus californicusBruner toChimarocephalaScudder, comb.n., a combination used historically. The evolution of certain characters in theChortophagagroup is discussed, and a key to the genera is provided.

scholarly journals Morphological and phylogenetic evidence for two new species of Russula subg. Heterophyllidia from Guangdong Province of China

MycoKeys ◽  
2021 ◽  
Vol 82 ◽  
pp. 139-157
Author(s):  
Bin Chen ◽  
Jie Song ◽  
Yanliu Chen ◽  
Jinhua Zhang ◽  
Junfeng Liang
Keyword(s):  
New Species ◽  
Maximum Likelihood ◽  
Molecular Phylogeny ◽  
Phylogenetic Analyses ◽  
Guangdong Province ◽  
Morphological Characters ◽  
Molecular Data ◽  
Terminal Cell ◽  
Two New Species ◽  
Long Chains

Two new species of Russula subg. Heterophyllidia from Guangdong Province of China were described and illustrated based on morphological characters, and their identity supported by molecular phylogeny. R. luofuensis is morphologically characterized by a grayish yellow to brownish orange pileus center with a purplish gray to grayish magenta margin, a surface that is cracked and broken into small golden-brown patches, subglobose to broadly ellipsoid basidiospores with warts fused in short or long chains and a suprapellis composed of hyphal extremities with inflated, ellipsoid or globose cells and attenuated terminal cell. R. subbubalina is distinguished by the blanched almond to dark salmon pileus that is cracked with age, subglobose to broadly ellipsoid basidiospores with wart fused in short or long chains and frequently connected by line connections, a suprapellis with hyphal ends composed of inflated or ellipsoid cells and attenuated terminal cell, and pileocystidia that are mainly clavate and sometimes with round or ellipsoid appendage. The phylogenetic analyses based on ITS-nrLSU-mtSSU-TEF1 dataset were performed using maximum likelihood and Bayesian analysis. In terms of morphological features and molecular data, the former species belongs to subsect. Virescentinae, whereas the latter comes under subsect. Heterophyllinae.

scholarly journals Pseudodidymosphaeria gen. nov. in Massarinaceae

Phytotaxa ◽  
2015 ◽  
Vol 231 (3) ◽  
pp. 271 ◽  
Author(s):  
Kasun Madhusanka Thambugala ◽  
YU CHUNFANG ◽  
ERIO CAMPORESI ◽  
ALI H. BAHKALI ◽  
ZUO YI LIU ◽  
...  
Keyword(s):  
Maximum Likelihood ◽  
Molecular Phylogeny ◽  
Bayesian Analysis ◽  
Phylogenetic Trees ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
New Taxon ◽  
Asexual Morph ◽  
Spartium Junceum

Didymosphaeria spartii was collected from dead branches of Spartium junceum in Italy. Multi-gene phylogenetic analyses of ITS, 18S and 28S nrDNA sequence data were carried out using maximum likelihood and Bayesian analysis. The resulting phylogenetic trees showed this to be a new genus in a well-supported clade in Massarinaceae. A new genus Pseudodidymosphaeria is therefore introduced to accommodate this species based on molecular phylogeny and morphology. A illustrated account is provided for the new genus with its asexual morph and the new taxon is compared with Massarina and Didymosphaeria.

scholarly journals Morpho-molecular diversity of Linocarpaceae (Chaetosphaeriales): Claviformispora gen. nov. from decaying branches of Phyllostachys heteroclada

MycoKeys ◽  
2020 ◽  
Vol 70 ◽  
pp. 1-17
Author(s):  
Xiu-Lan Xu ◽  
Chun-Lin Yang ◽  
Rajesh Jeewon ◽  
Dhanushka N. Wanasinghe ◽  
Ying-Gao Liu ◽  
...  
Keyword(s):  
Bayesian Inference ◽  
Maximum Likelihood ◽  
Molecular Diversity ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
New Taxon ◽  
Dna Sequence Data ◽  
Distinct Genus

In this paper, Claviformisporagen. nov. in Linocarpaceae is introduced from Phyllostachys heteroclada in Sichuan Province, China. The new genus is characterised by its distinct morphological characters, such as ostiole with periphyses, asci with a thick doughnut-shaped, J- apical ring and clavate ascospore without septum-like band and appendage. Maximum Likelihood and Bayesian Inference phylogenetic analyses, based on DNA sequence data from ITS, LSU, SSU and TEF-1α regions, provide further evidence that the fungus is a distinct genus within this family. The new genus is compared with similar genera, such as Linocarpon and Neolinocarpon. Descriptions, illustrations and notes are provided for the new taxon.

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