scholarly journals Tanaididae (Crustacea, Tanaidacea, Tanaidomorpha, Tanaidoidea) on a Floating Dock, West Beach, Adelaide, South Australia: Introduced or Indigenous?

Zootaxa ◽  
2021 ◽  
Vol 4996 (1) ◽  
pp. 83-125
Author(s):  
VALERIE K. TAIT ◽  
KATHLEEN E. CONLAN ◽  
SABINE DITTMANN
Keyword(s):  
Eastern Mediterranean ◽  
South Australia ◽  
Molecular Data ◽  
Indigenous Species ◽  
Sequence Matching ◽  
Fouling Communities ◽  
History Of ◽  
Morphological And Molecular Data ◽  
One Year ◽  
Non Indigenous Species

Floating artificial structures provide sites for fouling communities and favourable habitat for the establishment of non-indigenous species. Two species of Tanaididae dominated crustacean biota in a one year time-series sampling of macroalgae on the floating dock at the West Beach boat ramp, Adelaide, South Australia. This paper provides identifications for these two species and discusses inter- and intra-species variability considering the available body of morphological and molecular information. We have given one species a new species designation, Tanais adelaidensis n. sp. The other has a 655 nucleotide CO1 sequence matching that of Hexapleomera sasuke Tanabe & Kakui, 2019 collected in Japan, also matching a shorter CO1 sequence for a described Zeuxo Templeton, 1840 species from the Eastern Mediterranean. This work underlines the utility and need for detailed morphological and molecular data to resolve the taxonomy and biogeography of fouling and holdfast community tanaids, particularly those that have the demonstrated potential for a history of transport between geographically distant sites.  

Molecular phylogeny of diploid Hordeum species and incongruence between chloroplast and nuclear datasets

Genome ◽  
2011 ◽  
Vol 54 (12) ◽  
pp. 986-992 ◽  
Author(s):  
Huan Wang ◽  
Dongfa Sun ◽  
Genlou Sun
Keyword(s):  
Evolutionary History ◽  
Nuclear Gene ◽  
Intergenic Spacer ◽  
Molecular Data ◽  
Genome Species ◽  
Different Types ◽  
History Of ◽  
Morphological And Molecular Data ◽  
Hordeum Species ◽  
Eurasian Species

The phylogeny of diploid Hordeum species has been studied using both chloroplast and nuclear gene sequences. However, the studies of different nuclear datasets of Hordeum species often arrived at similar conclusions, whereas the studies of different chloroplast DNA data generally resulted in inconsistent conclusions. Although the monophyly of the genus is well supported by both morphological and molecular data, the intrageneric phylogeny is still a matter of controversy. To better understand the evolutionary history of Hordeum species, two chloroplast gene loci (trnD-trnT intergenic spacer and rps16 gene) and one nuclear marker (thioreoxin-like gene (HTL)) were used to explore the phylogeny of Hordeum species. Two obviously different types of trnD-trnT sequences were observed, with an approximately 210 base pair difference between these two types: one for American species, another for Eurasian species. The trnD-trnT data generally separated the diploid Hordeum species into Eurasian and American clades, with the exception of Hordeum marinum subsp. gussoneanum. The rps16 data also grouped most American species together and suggested that Hordeum flexuosum has a different plastid type from the remaining American species. The nuclear gene HTL data clearly divided Hordeum species into two clades: the Xu + H genome clade and the Xa + I genome clade. Within clades, H genome species were well separated from the Xu species, and the I genome species were well separated from the Xa genome species. The incongruence between chloroplast and nuclear datasets was found and discussed.

scholarly journals Stationary substrates facilitate bioinvasion in Paranaguá Bay in southern Brazil

2010 ◽  
Vol 58 (spe3) ◽  
pp. 23-28 ◽  
Author(s):  
Rosana M. Rocha ◽  
Leonardo C. Cangussu ◽  
Mariana P. Braga
Keyword(s):  
Introduced Species ◽  
Artificial Substrates ◽  
Management Tool ◽  
Specific Substrate ◽  
Indigenous Species ◽  
Constant Depth ◽  
Fouling Communities ◽  
Paranaguá Bay ◽  
Non Indigenous Species ◽  
Stationary Plate

Artificial substrates in and near ports and marinas commonly have many non-indigenous species and are the first stepping stone for the establishment of bioinvasors. Substrate movement influences fouling communities and so understanding of how species assemblages are related to specific substrate conditions is crucial as a management tool. Here we describe the species assemblage of the community after six months of development on granite plates in Paranaguá Bay. Species richness was similar in the two treatments, with 12 species on floating (constant depth) plates and 15 on stationary (variable depth) plates. However, species composition differed, with the community on floating plates being dominated by the native bivalve Mytella charruana (66.1 ± 5.5% cover) and that on stationary plates dominated by the barnacles Fistulobalanus citerosum (49.8 ± 3.5% cover) and the introduced Amphibalanus reticulatus (33.9 ± 3.7% cover). Other introduced species were Garveia franciscana, on one stationary plate, and Megabalanus coccopoma also on one stationary plate and not very abundant on half of the floating plates (< 2%). Thus, stationary plates were more susceptible to introduced species that may become very abundant, suggesting that this type of substrate should be a priority in management for bioinvasion control. We also hypothesize that the native bivalve M. charruana is the dominant competitor for space on floating substrates, thereby reducing the invasiveness of that type of substrate.

scholarly journals Settlement plates as monitoring devices for non-indigenous species in marine fouling communities

2017 ◽  
Vol 8 (4) ◽  
pp. 559-566 ◽  
Author(s):  
Michelle Marraffini ◽  
Gail Ashton ◽  
Chris Brown ◽  
Andrew Chang ◽  
Greg Ruiz
Keyword(s):  
Indigenous Species ◽  
Fouling Communities ◽  
Marine Fouling ◽  
Non Indigenous Species ◽  
Monitoring Devices

scholarly journals Low diversity or poorly explored? Mesophotic molluscs highlight undersampling in the Eastern Mediterranean

2020 ◽  
Vol 29 (14) ◽  
pp. 4059-4072
Author(s):  
Paolo G. Albano ◽  
Michele Azzarone ◽  
Bruno Amati ◽  
Cesare Bogi ◽  
Bruno Sabelli ◽  
...  
Keyword(s):  
Eastern Mediterranean ◽  
Rocky Reef ◽  
Indigenous Species ◽  
Diversity Gradient ◽  
Conservation Actions ◽  
The Mediterranean ◽  
Molluscan Diversity ◽  
Vulnerable Habitats ◽  
Non Indigenous Species ◽  
Recreational Scuba

Abstract Mesophotic assemblages are the next frontier of marine exploration in the Mediterranean Sea. Located below recreational scuba diving depths, they are difficult to access but host a diverse array of habitats structured by large invertebrate species. The Eastern Mediterranean has been much less explored than the western part of the basin and its mesophotic habitats are virtually unknown. We here describe two mesophotic (77–92 m depth) molluscan assemblages at a rocky reef and on a soft substrate off northern Israel. We record 172 species, of which 43 (25%) are first records for Israel and increase its overall marine molluscan diversity by 7%. Only five of these species have been reported in recent surveys of the nearby Lebanon, suggesting that our results are robust at a broader scale than our study area and that the reported west-to-east declining diversity gradient in the Mediterranean needs a reappraisal based on proper sampling of the eastern basin. We found only four (2%) non-indigenous species, represented by seven (0.5%) specimens. These results suggest that pristine native assemblages still thrive at this depth in Israel, in contrast to the shallow subtidal heavily affected by global warming and biological invasions, calling for strong conservation actions for these valuable but vulnerable habitats.

Berteroa physocarpa (Brassicaceae), a new species from NW Turkey based on morphological and molecular data

Phytotaxa ◽  
2017 ◽  
Vol 305 (2) ◽  
pp. 87
Author(s):  
SIRRI YÜZBAŞIOĞLU ◽  
IHSAN A. AL-SHEHBAZ ◽  
ELİF YÜZBAŞIOĞLU ◽  
EDA DALYAN
Keyword(s):  
New Species ◽  
Its Region ◽  
Molecular Data ◽  
Alpine Zone ◽  
Nw Turkey ◽  
Maximum Likelihood Methods ◽  
History Of ◽  
Morphological And Molecular Data ◽  
Relationship Of ◽  
A New Species

Berteroa physocarpa, a new species from the subalpine-alpine zone (1600−2200 m) of northwest Anatolia, is described and illustrated. It shares with the other species of Berteroa 2n=16 and morphologically is readily distinguished from them by having distinctly inflated fruit with glabrous valves. Sequences of nuclear ribosomal transcribed spacer (ITS) region were used to determine the relationship of Berteroa species using maximum likelihood methods. The phylogenetic results confirmed the recently established systematic history of Berteroa and also supported the recognition of this new species.

scholarly journals Phylogenetic studies of eucalypts: fossils, morphology and genomes

2016 ◽  
Vol 128 (1) ◽  
pp. 12 ◽  
Author(s):  
Michael J. Bayly
Keyword(s):  
Dna Sequencing ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Phylogenetic Studies ◽  
Recent Advances ◽  
History Of ◽  
Morphological And Molecular Data ◽  
Economic Use ◽  
Insight Into

The eucalypt group includes seven genera: Eucalyptus, Corymbia, Angophora, Eucalyptopsis, Stockwellia, Allosyncarpia and Arillastrum. Knowledge of eucalypt phylogeny underpins classification of the group, and facilitates understanding of their ecology, conservation and economic use, as well as providing insight into the history of Australia’s flora. Studies of fossils and phylogenetic analyses of morphological and molecular data have made substantial contributions to understanding of eucalypt relationships and biogeography, but relationships among some genera are still uncertain, and there is controversy about generic circumscription of the bloodwood eucalypts (genus Corymbia). Relationships at lower taxonomic levels, e.g. among sections and series of Eucalyptus, are also not well resolved. Recent advances in DNA sequencing methods offer the ability to obtain large genomic datasets that will enable improved understanding of eucalypt evolution.

scholarly journals Ancient DNA forces reconsideration of evolutionary history of Mediterranean pygmy elephantids

2006 ◽  
Vol 2 (3) ◽  
pp. 451-454 ◽  
Author(s):  
Nikos Poulakakis ◽  
Aris Parmakelis ◽  
Petros Lymberakis ◽  
Moysis Mylonas ◽  
Eleftherios Zouros ◽  
...  
Keyword(s):  
Dna Sequence ◽  
Ancient Dna ◽  
Evolutionary History ◽  
Eastern Mediterranean ◽  
Multiple Displacement Amplification ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Mediterranean Islands ◽  
Amplification Method ◽  
History Of

During the Pleistocene pygmy elephantids, some only a quarter of their ancestors' size, were present on Mediterranean islands until about 10 000 years ago (y.a.). Using a new methodology for ancient DNA (aDNA) studies, the whole genomic multiple displacement amplification method, we were able to retrieve cytochrome b (cyt b ) DNA fragments from 4200 to 800 000 y.a. specimens from island and mainland samples, including pygmy and normal-sized forms. The short DNA sequence (43 bp) retrieved from the 800 000 y.a. sample is one of the oldest DNA fragment ever retrieved. Duplication of the experiments in two laboratories, the occurrence of three diagnostic sites and the results of the phylogenetic analyses strongly support its authenticity. Our results challenge the prevailing view that pygmy elephantids of the eastern Mediterranean originated exclusively from Elephas , suggesting independent histories of dwarfism and the presence of both pygmy mammoths and elephant-like taxa on these islands. Based on our molecular data, the origin of the Tilos and Cyprus elephantids from a lineage within the genus Elephas is confirmed, while the DNA sequence from the Cretan sample falls clearly within the mammoth clade. Thus, the name Mammuthus creticus rather than Elephas creticus , seems to be justified for this form. Our findings also suggest a need to re-evaluate the evolutionary history of the Sicilian/Maltese species, traditionally included in the genus Elephas .

scholarly journals The role of marinas in the establishment and spread of non-indigenous species in Baltic Sea fouling communities

Biofouling ◽  
2021 ◽  
pp. 1-14
Author(s):  
Okko Outinen ◽  
Riikka Puntila-Dodd ◽  
Ieva Barda ◽  
Radosław Brzana ◽  
Joanna Hegele-Drywa ◽  
...  
Keyword(s):  
Baltic Sea ◽  
Indigenous Species ◽  
Fouling Communities ◽  
Non Indigenous Species

Holocene fish assemblages provide baseline data for the rapidly changing eastern Mediterranean

The Holocene ◽  
2020 ◽  
Vol 30 (10) ◽  
pp. 1438-1450
Author(s):  
Konstantina Agiadi ◽  
Paolo G Albano
Keyword(s):  
Radiocarbon Dating ◽  
Trophic Structure ◽  
Fish Assemblages ◽  
Eastern Mediterranean ◽  
Marine Ecosystem ◽  
Fish Fauna ◽  
Suez Canal ◽  
Indigenous Species ◽  
The Mediterranean ◽  
Non Indigenous Species

The eastern Mediterranean marine ecosystem is undergoing massive modification due to biological invasions, overfishing, habitat deterioration, and climate warming. Our ability to quantify these changes is severely hindered by the lack of an appropriate baseline; most ecological datasets date back a few decades only and show already strong signatures of impact. Surficial death assemblages (DAs) offer an alternative data source that provides baseline information on community structure and composition. In this study, we reconstruct the marine fish fauna of the southern shallow Israeli shelf before the opening of the Suez Canal based on fish otoliths. We quantify the age of the otolith DAs by radiocarbon dating, and describe its taxonomic composition, geographic affinity, and trophic structure. Additionally, we test by radiocarbon dating the hypothesis that Bregmaceros, a presumed Lessepsian invader with continuous presence in the Mediterranean throughout the late Cenozoic, is a relict species. The otolith DA dates back to the mid-Holocene because 75% of the dated otoliths of the native species are older than the opening of the Suez Canal in 1869, suggesting that the DA is a proper baseline for quantifying modern impacts. Consistently, 97% of the otoliths and 88% of the species we collected belong to native Mediterranean species. The native anchovy Engraulis encrasicolus dominates the DAs, although gobiids are the most diverse group (14 species, 28%). The DAs show similar trophic structure to present-day pristine Mediterranean coastal fish assemblages. Two non-indigenous species are recorded here for the first time in the Mediterranean Sea, Amblygobius albimaculatus and Callogobius sp., highlighting the importance of DAs for detecting non-indigenous species. Finally, Bregmaceros otoliths are modern, not supporting the previous hypothesis that the taxon is a Pleistocene relict.

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