Subspecific taxonomy of African porcupines Hystrix spp.: is there anything beyond the species level?

Zootaxa ◽  
2021 ◽  
Vol 5047 (5) ◽  
pp. 501-519
Author(s):  
EMILIANO MORI ◽  
DAVIDE SOGLIANI ◽  
CATERINA SENINI ◽  
ALESSANDRO LAURENZI ◽  
ANDREA VIVIANO ◽  
...  
Keyword(s):  
East Africa ◽  
Nuclear Dna ◽  
Species Level ◽  
Morphological Data ◽  
Clinal Variation ◽  
Hystrix Cristata ◽  
The Past ◽  
Clear Explanation ◽  
Nomina Dubia

Taxonomy is a mistreated matter, but its role in ecology, behaviour and conservation studies is pivotal. Disentangling amongst different subspecies is challenging given the high arbitrariness level in determining thresholds of genetic and morphological distances. Splitting frenzy trends have increased the number of animal taxa and for most of them a critical redefinition is required. In this work, we reviewed knowledge and validity of subspecific taxa identified for African crested porcupines Hystrix cristata and Hystrix africaeaustralis. In the past, several subspecies were recognized for both the species, but successive works suggested H. cristata and H. africaeaustralis as monotypic species with no clear explanation. Recently, the validity of the taxon H. cristata senegalica has been claimed again. We analysed all available data and discussed all the subspecific taxa in light of both genetic and morphological data. We revalidated here the synonymy Hystrix senegalica Cuvier, 1823 = Hystrix cristata Linnaeus, 1758. Syn. rev. Two names are treated as nomina dubia: Acanthion daubentonii Cuvier, 1823 (formalization) and “Hystrix capensis Gr.”. Hystrix cristata var. alba de Sélys-Longchamps, 1839 has been deleted from the synonymic list of H. cristata. Neither mitochondrial nor nuclear DNA data militate for the existence of any subspecific taxon, although further data are required for H. cristata from East Africa (e.g., Kenya and Tanzania). Similarly, morphology seems to play for a clinal variation in both species. For available data, we thus strongly recommend to keep both H. cristata and H. africaeaustralis as monotypic species.  

Money, Morphology and Molecules. Some comments on Wortley, Bennett and Scotland (2002), Taxonomy and phylogeny reconstruction: two distinct research agendas in systematics. (see p. 335 of this issue)

2002 ◽  
Vol 59 (3) ◽  
pp. 451-457 ◽  
Author(s):  
P. F. STEVENS
Keyword(s):  
Molecular Systematics ◽  
Large Scale ◽  
Species Level ◽  
Molecular Techniques ◽  
Morphological Data ◽  
Phylogeny Reconstruction ◽  
Reasonable Time ◽  
The Past ◽  
Short Time ◽  
Made In

The state of systematics, for convenience here divided into taxonomy (the delimitation, description and inventory of species) and phylogeny reconstruction, is evaluated. Molecular systematics may seem overemphasized, but the resulting gains made in our understanding of relationships in a relatively short time are very considerable. Although morphological data currently play only a limited role in detecting large-scale phylogenetic pattern, the analysis by Wortley et al. of the role morphology has played in the past is not easily interpreted. At species level, it is unclear what effect molecular techniques will have on our understanding of species limits, but it is likely to be considerable. Although taxonomy is both essential and underfunded, there seems little point in asking for more money until we can justify the limits of the species we describe more clearly and until we have cleared up the impediments that so much slow the practice of taxonomy. Business cannot remain as usual if any of the grand inventory projects we have started are to be finished within a reasonable time, or even to be of much use when they are.

scholarly journals Conceptualizing histories of multispecies entanglements: Ancient pathogen genomics and the case of Borrelia recurrentis

2021 ◽  
pp. 146960532199394
Author(s):  
Venla Oikkonen
Keyword(s):  
East Africa ◽  
Ancient Dna ◽  
Relapsing Fever ◽  
Borrelia Recurrentis ◽  
The Past ◽  
Cultural Implications ◽  
Past Millennium

This article explores the conceptual and cultural implications of using pathogen ancient DNA (aDNA) collected in archaeological contexts to understand the past. More specifically, it examines ancient pathogen genomics as a way of conceptualizing multispecies entanglements. The analysis focuses on the 2018 sequencing of Borrelia recurrentis bacteria retrieved from a medieval graveyard in Oslo, Norway. B. recurrentis is associated with louse-borne relapsing fever (LBRF), known to have killed several million people in Europe during the past millennium, and it is still encountered in parts of East Africa. The article demonstrates that while aDNA research often foregrounds multispecies entanglements, its epistemic tools cannot easily address the ontological blurriness of pathogens and their embeddedness in vibrant material processes. The article draws on feminist posthumanities work on microbes and materiality to highlight conceptual openings that a theorization of ancient pathogens could engender.

Corrigendum to: Lamprothamnium in Australia (Characeae, Charophyceae)

2013 ◽  
Vol 26 (6) ◽  
pp. 475
Author(s):  
Michelle T. Casanova
Keyword(s):  
New Species ◽  
Species Level ◽  
Type Material ◽  
Review Of The Literature ◽  
Comprehensive Review ◽  
The Past

Charophytes in the genus Lamprothamnium exhibit a large amount of diversity, particularly in the examples from Australia, although little of that variation has been recognised at species level in the past. The Australian members of the genus are revised here on the basis of extensive new collections, examination of specimens in herbaria and comprehensive review of the literature and available type material. The existing species Lamprothamnium macropogon (A.Braun) Ophel, L. inflatum (Fil. & G.O.Allen ex Fil.) A.García & Karol and L. heraldii A.García & Casanova are retained, eight new species are described (L. australicum Casanova, L. beilbyae Casanova, L. capitatum Casanova, L. compactum Casanova, L. coorongense Casanova, L. diminutum Casanova, L. macroanthum Casanova and L. stipitatum Casanova) and two taxa variously treated at infraspecific rank in Lychnothamnus are transferred to Lamprothamnium at species rank (L. cockajemmyense Casanova, L. tasmanicum (A.Braun) Casanova). Neither L. papulosum (Wallr.) J.Groves nor L. succinctum (A.Braun) R.D.Wood are confirmed for Australia after examination of the type material of these species. Species are distinguished by the arrangement of the gametangia, morphology of the fertile whorls and characteristics of the oospores. Four of these species are dioecious and nine are monoecious, which supports published conjectures concerning the biogeography of charophyte species (Proctor (1980): J. Phycol. 16, 218–233, doi:10.1111/j.1529-8817.1980.tb03023.x).

scholarly journals Web 2.0 vs. the Semantic Web: A Philosophical Assessment

Episteme ◽  
2009 ◽  
Vol 6 (1) ◽  
pp. 25-37 ◽  
Author(s):  
Luciano Floridi
Keyword(s):  
Semantic Web ◽  
Web 2.0 ◽  
Information And Communication Technologies ◽  
Communication Technologies ◽  
Digital Environment ◽  
The Past ◽  
Clear Explanation ◽  
Significant Difference ◽  
The Future ◽  
Information And Communication

ABSTRACTThe paper develops some of the conclusions, reached in Floridi (2007), concerning the future developments of Information and Communication Technologies (ICTs) and their impact on our lives. The two main theses supported in that article were that, as the information society develops, the threshold between online and offline is becoming increasingly blurred, and that once there won't be any significant difference, we shall gradually re-conceptualise ourselves not as cyborgs but rather as inforgs, i.e. socially connected, informational organisms. In this paper, I look at the development of the so-called Semantic Web and Web 2.0 from this perspective and try to forecast their future. Regarding the Semantic Web, I argue that it is a clear and well-defined project, which, despite some authoritative views to the contrary, is not a promising reality and will probably fail in the same way AI has failed in the past. Regarding Web 2.0, I argue that, although it is a rather ill-defined project, which lacks a clear explanation of its nature and scope, it does have the potentiality of becoming a success (and indeed it is already, as part of the new phenomenon of Cloud Computing) because it leverages the only semantic engines available so far in nature, us. I conclude by suggesting what other changes might be expected in the future of our digital environment.

scholarly journals Mesozoic dinosaurs from Brazil and their biogeographic implications

2011 ◽  
Vol 83 (1) ◽  
pp. 23-60 ◽  
Author(s):  
Jonathas S. Bittencourt ◽  
Max C. Langer
Keyword(s):  
North Africa ◽  
Rio Grande ◽  
Species Level ◽  
Northeastern Brazil ◽  
Late Triassic ◽  
Close Correspondence ◽  
Rio Grande Do Sul ◽  
Central Brazil ◽  
South Central ◽  
Nomina Dubia

The record of dinosaur body-fossils in the Brazilian Mesozoic is restricted to the Triassic of Rio Grande do Sul and Cretaceous of various parts of the country. This includes 21 named species, two of which were regarded as nomina dubia, and 19 consensually assigned to Dinosauria. Additional eight supraspecific taxa have been identified based on fragmentary specimens and numerous dinosaur footprints known in Brazil. In fact, most Brazilian specimens related to dinosaurs are composed of isolated teeth and vertebrae. Despite the increase of fieldwork during the last decade, there are still no dinosaur body-fossils of Jurassic age and the evidence of ornithischians in Brazil is very limited. Dinosaur faunas from this country are generally correlated with those from other parts of Gondwana throughout the Mesozoic. During the Late Triassic, there is a close correspondence to Argentina and other south-Pangaea areas. Mid-Cretaceous faunas of northeastern Brazil resemble those of coeval deposits of North Africa and Argentina. Southern hemisphere spinosaurids are restricted to Africa and Brazil, whereas abelisaurids are still unknown in the Early Cretaceous of the latter. Late Cretaceous dinosaur assemblages of south-central Brazil are endemic only to genus or, more conspicuously, to species level, sharing closely related taxa with Argentina, Madagascar, Indo-Pakistan and, to a lesser degree, continental Africa.

A Wider Eastern African Economic Union? Some Geographical Aspects

1968 ◽  
Vol 6 (4) ◽  
pp. 485-493 ◽  
Author(s):  
A. M. O'Connor
Keyword(s):  
Economic Development ◽  
East Africa ◽  
Economic Integration ◽  
Customs Union ◽  
The Past ◽  
Political Independence ◽  
Close Relationship ◽  
Economic Union

Economic integration in East Africa has been discussed throughout the past 50 years or more, although—until recently—only in terms of Kenya, Tanzania, and Uganda. Almost as soon as Kenya and Uganda became established as political entities, close economic links were established between them, and when British administration was extended to Tanganyika after 1918 that country was brought into close relationship with its two northern neighbours. Thus a customs union between Kenya and Uganda was established in 1917, and Tanganyika was gradually incorporated within it between 1922 and 1927. The links were strengthened as economic development advanced, and were formalised under the East Africa High Commission from 1948 onwards: so they became an important part of the inheritance of the three states as they gained political independence in the years 1961–1963.1

scholarly journals Rapid ecological specialization despite constant population sizes

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6476 ◽  
Author(s):  
Andrinajoro R. Rakotoarivelo ◽  
Paul O’Donoghue ◽  
Michael W. Bruford ◽  
Yoshan Moodley
Keyword(s):  
East Africa ◽  
Nuclear Dna ◽  
Incomplete Lineage Sorting ◽  
Demographic History ◽  
12S Rrna ◽  
Surprising Result ◽  
Ecological Specialization ◽  
Lineage Sorting ◽  
Mt Dna ◽  
Data Set

Background The bushbuck, Tragelaphus scriptus, is a widespread and ecologically diverse ungulate species complex within the spiral-horned antelopes. This species was recently found to consist of two genetically divergent but monophyletic lineages, which are paraphyletic at mitochondrial (mt)DNA owing to an ancient interspecific hybridization event. The Scriptus lineage (T. s. scriptus) inhabits the north-western half of the African continent while Sylvaticus (T. s. sylvaticus) is found in the south-eastern half. Here we test hypotheses of historical demography and adaptation in bushbuck using a higher-resolution framework, with four nuclear (MGF, PRKCI, SPTBN, and THY) and three new mitochondrial markers (cytochrome b, 12S rRNA, and 16S rRNA). Methods Genealogies were reconstructed for the mitochondrial and nuclear data sets, with the latter dated using fossil calibration points. We also inferred the demographic history of Scriptus and Sylvaticus using coalescent-based methods. To obtain an overview of the origins and ancestral colonisation routes of ancestral bushbuck sequences across geographic space, we conducted discrete Bayesian phylogeographic and statistical dispersal-vicariance analyses on our nuclear DNA data set. Results Both nuclear DNA and mtDNA support previous findings of two genetically divergent Sylvaticus and Scriptus lineages. The three mtDNA loci confirmed 15 of the previously defined haplogroups, including those with convergent phenotypes. However, the nuclear tree showed less phylogenetic resolution at the more derived parts of the genealogy, possibly due to incomplete lineage sorting of the slower evolving nuclear genome. The only exception to this was the montane Menelik’s bushbuck (Sylvaticus) of the Ethiopian highlands, which formed a monophyletic group at three of four nuclear DNA loci. We dated the coalescence of the two lineages to a common ancestor ∼2.54 million years ago. Both marker sets revealed similar demographic histories of constant population size over time. We show that the bushbuck likely originated in East Africa, with Scriptus dispersing to colonise suitable habitats west of the African Rift and Sylvaticus radiating from east of the Rift into southern Africa via a series of mainly vicariance events. Discussion Despite lower levels of genetic structure at nuclear loci, we confirmed the independent evolution of the Menelik’s bushbuck relative to the phenotypically similar montane bushbuck in East Africa, adding further weight to previous suggestions of convergent evolution within the bushbuck complex. Perhaps the most surprising result of our analysis was that both Scriptus and Sylvaticus populations remained relatively constant throughout the Pleistocene, which is remarkable given that this was a period of major climatic and tectonic change in Africa, and responsible for driving the evolution of much of the continent’s extant large mammalian diversity.

Revision of Autolytinae (Syllidae: Polychaeta)

Zootaxa ◽  
2004 ◽  
Vol 680 (1) ◽  
pp. 1 ◽  
Author(s):  
ARNE NYGREN
Keyword(s):  
Morphological Characters ◽  
Molecular Data ◽  
Morphological Data ◽  
Data Sets ◽  
Nominal Species ◽  
Strict Consensus Tree ◽  
Incertae Sedis ◽  
Nomina Dubia ◽  
Morphological And Molecular Data ◽  
Combined Data

Autolytinae is revised based on available types, and newly collected specimens. Out of 170 nominal species, 18 are considered as incertae sedis, 43 are regarded as junior synonyms, and 25 are referred to as nomina dubia. The relationships of Autolytinae is assessed from 51 morphological characters and 211 states for 76 ingroup-taxa, and 460 molecular characters from mitochondrial 16S rDNA and nuclear 18S rDNA for 31 ingroup-taxa; outgroups include 12 non-autolytine syllid polychaetes. Two analyses are provided, one including morphological data only, and one with combined morphological and molecular data sets. The resulting strict consensus tree from the combined data is chosen for a reclassification. Three main clades are identified: Procerini trib. n., Autolytini Grube, 1850, and Epigamia gen. n. Proceraea Ehlers, 1864 and Myrianida Milne Edwards, 1845 are referred to as nomen protectum, while Scolopendra Slabber, 1781, Podonereis Blainville, 1818, Amytis Savigny, 1822, Polynice Savigny, 1822, and Nereisyllis Blainville, 1828 are considered

Prospects for East Africa in 2022

2021 ◽  
Keyword(s):  
East Africa ◽  
Content Type ◽  
The Past

Subject Prospects for East Africa in 2022. Significance The past year produced considerable political turbulence across East Africa. The coming year threatens to be even more volatile. Indeed, the region faces a period of almost unprecedented uncertainty. It looks almost certain that 2022 will bring major changes -- and potentially major disruptions -- in some of the region’s largest countries.

Geomophological and vulnerability analysis of a coastal delta under increased hydrological alteration over the past two centuries: Tana River delta, Kenya, East Africa.

2021 ◽  
Author(s):  
Peter Gitau ◽  
Stéphanie Duvail ◽  
Dirk Verschuren ◽  
Dominique Guillaud
Keyword(s):  
Sea Level Rise ◽  
East Africa ◽  
Sea Level ◽  
Coastal Dune ◽  
River Delta ◽  
River Channels ◽  
Dune System ◽  
The Past ◽  
Tana River ◽  
Coastal Dune System

<p>Coastal deltas worldwide are under risk of degradation due to the increasing impacts of sea-level rise, and continuous human alterations of river basin hydrology. This research highlights the geomorphological changes that have occurred within the Tana River delta in Kenya, an important deltaic ecosystem of high biodiversity value in East Africa.</p><p>The geomorphological features (river channels, floodplain, coastal dune system) and their evolution over the past two centuries were described. Aerial and satellite imagery was used to assess the magnitude and distribution of coastal changes from the 1960s to present.  Additionally, sediment cores recovered within the mangrove environment were analysed to establish the succession of sedimentation periods and patterns. Finally, we explored the response of the coastal processes of deposition and erosion under anthropogenic alterations of the hydrological system.</p><p>It was established that over the past two centuries Tana River has changed its main channel and outlet to the Indian Ocean on three occasions. A first river avulsion occurred in the 1860s, followed by a second avulsion in the late 1890s that was promoted by human interference through channel expansion and dyke construction. The third change in river course has occurred gradually over the past 20 years, amid human efforts to engineer the river channels.</p><p>From the sediment analysis and radiocarbon dating, it is ascertained that the lower deltaic region developed rapidly over the past ~180 years, facilitated by increased sedimentation from the main Tana River. On the other hand, analysis of the coastline changes indicate that there has been increased erosion of the coastal dune system and mangrove vegetation along the former river outlet, leading to rapid marine intrusion into local subsistence farming areas. By analysing the combined impacts of both natural river dynamics and human alteration we highlight how the integrity of the Tana River delta has increasingly become vulnerable under present sea level rise and continued upstream river alteration.</p>

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