scholarly journals Using Ego Network Data to Inform Agent-based Models of Diffusion

2018 ◽  
Vol 49 (4) ◽  
pp. 1018-1063 ◽  
Author(s):  
Jeffrey A. Smith ◽  
Jessica Burow

Agent-based modeling holds great potential as an analytical tool. Agent-based models (ABMs) are, however, also vulnerable to critique, as they often employ stylized social worlds, with little connection to the actual environment in question. Given these concerns, there has been a recent call to more fully incorporate empirical data into ABMs. This article falls in this tradition, exploring the benefits of using sampled ego network data in ABMs of cultural diffusion. Thus, instead of relying on full network data, which can be difficult and costly to collect, or no empirical network data, which is convenient but not empirically grounded, we offer a middle-ground, one combining ABMs with recent work on network sampling. The main question is whether this approach is effective. We provide a test of the approach using six complete networks; the test also includes a range of diffusion models (where actors follow different rules of adoption). For each network, we take a random ego network sample and use that sample to infer the full network structure. We then run a diffusion model through the known, complete networks, as well as the inferred networks, and compare the results. The results, on the whole, are quite strong: Across all analyses, the diffusion curves based on the sampled data are very similar to the curves based on the true, complete network. This suggests that ego network sampling can, in fact, offer a practical means of incorporating empirical data into an agent-based model.

2019 ◽  
Vol 9 (15) ◽  
pp. 2974 ◽  
Author(s):  
Aman Garg ◽  
Samson Yuen ◽  
Nuttiiya Seekhao ◽  
Grace Yu ◽  
Jeannie Karwowski ◽  
...  

Agent based models (ABM) were developed to numerically simulate the biological response to surgical vocal fold injury and repair at the physiological level. This study aimed to improve the representation of existing ABM through a combination of empirical and computational experiments. Empirical data of vocal fold cell populations including neutrophils, macrophages and fibroblasts were obtained using flow cytometry up to four weeks following surgical injury. Random Forests were used as a sensitivity analysis method to identify model parameters that were most influential to ABM outputs. Statistical Parameter Optimization Tool for Python was used to calibrate those parameter values to match the ABM-simulation data with the corresponding empirical data from Day 1 to Day 5 following surgery. Model performance was evaluated by verifying if the empirical data fell within the 95% confidence intervals of ABM outputs of cell quantities at Day 7, Week 2 and Week 4. For Day 7, all empirical data were within the ABM output ranges. The trends of ABM-simulated cell populations were also qualitatively comparable to those of the empirical data beyond Day 7. Exact values, however, fell outside of the 95% statistical confidence intervals. Parameters related to fibroblast proliferation were indicative to the ABM-simulation of fibroblast dynamics in final stages of wound healing.


PLoS ONE ◽  
2021 ◽  
Vol 16 (10) ◽  
pp. e0258944
Author(s):  
Tamao Maeda ◽  
Cédric Sueur ◽  
Satoshi Hirata ◽  
Shinya Yamamoto

Behavioural synchrony among individuals is essential for group-living organisms. The functioning of synchronization in a multilevel society, which is a nested assemblage of multiple social levels between many individuals, remains largely unknown. The aim of the present study was to build a model that explained the synchronization of activity in a multilevel society of feral horses. Multi-agent-based models were used based on four hypotheses: A) horses do not synchronize, B) horses synchronize with any individual in any unit, C) horses synchronize only within units, and D) horses synchronize across and within units, but internal synchronization is stronger. The empirical data obtained from drone observations best supported hypothesis D. This result suggests that animals in a multilevel society coordinate with other conspecifics not only within a unit but also at an inter-unit level. In this case, inter-individual distances are much longer than those in most previous models which only considered local interaction within a few body lengths.


Methodology ◽  
2006 ◽  
Vol 2 (1) ◽  
pp. 7-15 ◽  
Author(s):  
Joachim Gerich ◽  
Roland Lehner

Although ego-centered network data provide information that is limited in various ways as compared with full network data, an ego-centered design can be used without the need for a priori and researcher-defined network borders. Moreover, ego-centered network data can be obtained with traditional survey methods. However, due to the dynamic structure of the questionnaires involved, a great effort is required on the part of either respondents (with self-administration) or interviewers (with face-to-face interviews). As an alternative, we will show the advantages of using CASI (computer-assisted self-administered interview) methods for the collection of ego-centered network data as applied in a study on the role of social networks in substance use among college students.


2021 ◽  
Vol 9 (2) ◽  
pp. 417
Author(s):  
Sherli Koshy-Chenthittayil ◽  
Linda Archambault ◽  
Dhananjai Senthilkumar ◽  
Reinhard Laubenbacher ◽  
Pedro Mendes ◽  
...  

The human microbiome has been a focus of intense study in recent years. Most of the living organisms comprising the microbiome exist in the form of biofilms on mucosal surfaces lining our digestive, respiratory, and genito-urinary tracts. While health-associated microbiota contribute to digestion, provide essential nutrients, and protect us from pathogens, disturbances due to illness or medical interventions contribute to infections, some that can be fatal. Myriad biological processes influence the make-up of the microbiota, for example: growth, division, death, and production of extracellular polymers (EPS), and metabolites. Inter-species interactions include competition, inhibition, and symbiosis. Computational models are becoming widely used to better understand these interactions. Agent-based modeling is a particularly useful computational approach to implement the various complex interactions in microbial communities when appropriately combined with an experimental approach. In these models, each cell is represented as an autonomous agent with its own set of rules, with different rules for each species. In this review, we will discuss innovations in agent-based modeling of biofilms and the microbiota in the past five years from the biological and mathematical perspectives and discuss how agent-based models can be further utilized to enhance our comprehension of the complex world of polymicrobial biofilms and the microbiome.


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