Preparation and properties of a novel polystyrene solid-phase fluorescence pH sensor based on a naphthalimide derivative

2021 ◽  
pp. 174751982110354
Author(s):  
Li Ling ◽  
Feng Tian ◽  
Guo Zhenghe ◽  
Huang Cheng ◽  
Liu Yuanyuan ◽  
...  
Keyword(s):  
Density Functional ◽  
Solid Phase ◽  
Ph Sensor ◽  
Optical Microscope ◽  
Polystyrene Microspheres ◽  
Recognition Mechanism ◽  
Functional Theory ◽  
Orbital Interactions ◽  
Spectroscopy Optical ◽  
Bonding Characteristics

A novel naphthalimide-based solid-phase fluorescence pH sensor (PS-Acyl-II) is prepared by immobilization of a small molecule probe (II) on polystyrene microspheres through an ester bond and is characterized by Fourier-transform infrared spectroscopy, optical microscope, scanning electron microscope, and conductiometric titrations. The sensor can determine the pH of a solution within the pH 4.0–7.0, free from interference of common metal ions, and can be reused several times. The geometries of II, PS-Acyl-II, and its product with H+ are optimized at the B3LYP/6-31G** level by density functional theory. The charge distribution, orbital interactions, and bonding characteristics are analyzed and compared in detail to discuss the recognition mechanism and structure–fluorescence property relationships.

Site preference and atomic ordering in the ternary Rh5Ga2As: first-principles calculations

2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Nilanjan Roy ◽  
Sucharita Giri ◽  
Harshit ◽  
Partha P. Jana
Keyword(s):  
Total Energy ◽  
First Principles ◽  
Density Functional ◽  
Structure Type ◽  
Site Preference ◽  
X Ray Diffraction ◽  
Atomic Ordering ◽  
Functional Theory ◽  
The Stability ◽  
Bonding Characteristics

Abstract The site preference and atomic ordering of the ternary Rh5Ga2As have been investigated using first-principles density functional theory (DFT). An interesting atomic ordering of two neighboring elements Ga and As reported in the structure of Rh5Ga2As by X-ray diffraction data only is confirmed by first-principles total-energy calculations. The previously reported experimental model with Ga/As ordering is indeed the most stable in the structure of Rh5Ga2As. The calculation detected that there is an obvious trend concerning the influence of the heteroatomic Rh–Ga/As contacts on the calculated total energy. Interestingly, the orderly distribution of As and Ga that is found in the binary GaAs (Zinc-blende structure type), retained to ternary Rh5Ga2As. The density of states (DOS) and Crystal Orbital Hamiltonian Population (COHP) are calculated to enlighten the stability and bonding characteristics in the structure of Rh5Ga2As. The bonding analysis also confirms that Rh–Ga/As short contacts are the major driving force towards the overall stability of the compound.

scholarly journals Vibrational Study and Force Field of the Citric Acid Dimer Based on the SQM Methodology

2011 ◽  
Vol 2011 ◽  
pp. 1-10 ◽  
Author(s):  
Laura Cecilia Bichara ◽  
Hernán Enrique Lanús ◽  
Evelina Gloria Ferrer ◽  
Mónica Beatriz Gramajo ◽  
Silvia Antonia Brandán
Keyword(s):  
Citric Acid ◽  
Force Field ◽  
Density Functional ◽  
Solid Phase ◽  
Dft Method ◽  
Electronic Charge ◽  
Functional Theory ◽  
The Density Functional Theory ◽  
Atoms In Molecules Theory ◽  
Best Fit

We have carried out a structural and vibrational theoretical study for the citric acid dimer. The Density Functional Theory (DFT) method with the B3LYP/6-31G∗ and B3LYP/6-311++ methods have been used to study its structure and vibrational properties. Then, in order to get a good assignment of the IR and Raman spectra in solid phase of dimer, the best fit possible between the calculated and recorded frequencies was carry out and the force fields were scaled using the Scaled Quantum Mechanic Force Field (SQMFF) methodology. An assignment of the observed spectral features is proposed. A band of medium intensity at 1242  together with a group of weak bands, previously not assigned to the monomer, was in this case assigned to the dimer. Furthermore, the analysis of the Natural Bond Orbitals (NBOs) and the topological properties of electronic charge density by employing Bader's Atoms in Molecules theory (AIM) for the dimer were carried out to study the charge transference interactions of the compound.

THEORETICAL STUDY OF SANDWICH COMPLEXES [Fe(η4 - E4)2]2- (E = N, P, As, Sb, AND Bi)

2007 ◽  
Vol 06 (02) ◽  
pp. 363-376 ◽  
Author(s):  
ZHIWEI LI ◽  
CUNYUAN ZHAO ◽  
LIUPING CHEN
Keyword(s):  
Density Functional ◽  
Theoretical Study ◽  
Sandwich Complexes ◽  
Functional Theory ◽  
Atomic Orbitals ◽  
Orbital Interactions ◽  
The Stability ◽  
Equilibrium Geometries ◽  
Orbital Analysis ◽  
Iron Center

The equilibrium geometries, energies, harmonic vibrational frequencies, stability, and aromaticities for the [Formula: see text], E 4 Fe , and [ Fe (η4 - E 4)2]2- ( E = N, P, As, Sb, and Bi ) species are studied using density functional theory (DFT). The ground states of the E 4 Fe and [ Fe (η4 - E 4)2]2- systems are predicted to be Cs and D4d structures, respectively. Orbital analysis indicates that the orbital interactions between the π orbitals of the ligands and the atomic orbitals of the d 6 iron center are the main bonding scheme for these [ Fe (η4 - E 4)2]2- (D4d) complexes. The stability of the [ Fe (η4 - E 4)2]2- complexes exhibits the order P > As > Sb > Bi > N for E. On the basis of comparison with the known ferrocene, the NICS analysis confirms that the [ Fe (η4 - E 4)2]2- (D4d) as well as ferrocene are aromatic. The dissected NICS reveals that the aromaticities of the [ Fe (η4 - E 4)2]2- (D4d) are primarily attributed to the effects of their E–E π bonds and Fe lone pairs.

THEORETICAL STUDY OF NITROGEN MONOXIDE ADSORPTION ON RHODIUM CLUSTERS AT DIFFERENT SITES

2008 ◽  
Vol 07 (04) ◽  
pp. 669-679 ◽  
Author(s):  
JIAN CHEN ◽  
KAI TAN ◽  
MENG-HAI LIN
Keyword(s):  
Density Functional ◽  
Nitrogen Monoxide ◽  
Density Functional Theory Calculations ◽  
Frontier Orbitals ◽  
Functional Theory ◽  
Orbital Interactions ◽  
Adsorption Sites ◽  
Rhodium Clusters ◽  
Adsorption Of Nitrogen ◽  
Back Donation

The adsorption of nitrogen monoxide NO with charged and neutral [Formula: see text] clusters at atop, bridge, and threefold hollow sites had been investigated by density functional theory calculations. The results showed that rhodium clusters had strong orbital interactions with NO and formed the complex [ Rh n NO ]-/0/+. The stretching vibrational frequencies of the N–O bonds changed with the different adsorption sites and clusters sizes. The interactions between rhodium clusters and NO molecular could be described through the donation and back-donation of their frontier orbitals. The more back donation from Rh to NO , the weaker the N–O bonds, exhibiting that the lengthening of the N–O bond length and the lowering of its vibrational frequency. In general, the donation and back-donation interactions followed the tendencies: anionic > neutral > cationic, big size > small size, threefold hollow site > bridge site > atop site.

Conformation and electronic structure of Carbidopa. A QM/MD study

2016 ◽  
Vol 15 (01) ◽  
pp. 1650002
Author(s):  
Ghader M. Sukker ◽  
Nuha Wazzan ◽  
Ashour Ahmed ◽  
Rifaat Hilal
Keyword(s):  
Density Functional ◽  
Minimum Energy ◽  
Geometry Optimization ◽  
Md Simulations ◽  
Energy Structure ◽  
Functional Theory ◽  
Conformational Preferences ◽  
The Density Functional Theory ◽  
Quantum Chemical Topology ◽  
Bonding Characteristics

Carbidopa (CD) is a drug used in combination with L-dopa (LD) in treatment of Parkinson’s disease (PD). CD is an inhibitor for enzyme decarboxylase, yet its mode of action is not entirely known although it is believed to involve enzyme shape recognition. The present work attempts to investigate the conformational preferences of CD. Tight geometry optimization at the density functional theory (DFT)/B3LYP/6-311[Formula: see text]G** level of theory has been carried out. The shallow nature of the potential energy surface (PES) and the presence of several local minima within a small energy range necessitate the launching of DFT-based molecular dynamics (MD) simulations. Two MD experiments were submitted for 35,000 points each. The complete trajectory in time domain of 10.5 ps is analyzed and discussed. The global minimum energy structure of CD is localized and identified by subsequent frequency calculations. The quantum theory of atom in molecules (QTAIMs) is used to extract and compare the quantum chemical topology features of the electron density distribution in CD and LD. Bonding characteristics are analyzed and discussed within the natural bond orbital (NBO) framework.

Differences in chemical properties and reactivity patterns of mono- and dioxomanganese(V) porphyrins as revealed by density functional theory

2013 ◽  
Vol 17 (10) ◽  
pp. 954-963 ◽  
Author(s):  
Sam P. de Visser
Keyword(s):  
Density Functional Theory ◽  
Ligand Exchange ◽  
Density Functional ◽  
Experimental Studies ◽  
Chemical Properties ◽  
Hydrogen Atom Abstraction ◽  
Functional Theory ◽  
Orbital Interactions ◽  
Catalytic Potential ◽  
Unique Mechanism

Recent experimental studies of Liu and Groves (J. Am. Chem. Soc. 2010; 132: 12847) on dioxomanganese(V) porphyrin complexes implicated substrate halogenation in good yield. Currently, little is known of this unique mechanism, therefore to gain understanding on the halogenation mechanism and the chemical features of this oxidant we decided to do a computational (density functional theory) study. We show that the dioxomanganese(V) complex has considerably different molecular (valence) orbitals as compared to monooxomanganese(V) porphyrin due to mixing of the metal 3d orbitals with 2p orbitals on both oxygen atoms. This results in a set of three pairs of orbitals of which the bonding and nonbonding pairs are doubly occupied and the antibonding orbitals are vacant. As a consequence, the bonding character along the Mn–O bond is less in dioxomanganese(V) as compared to monooxomanganese(V) complexes and therefore this bond can formally be described as a double bond rather than a triple bond. The differences in orbital interactions and orbital energies also affect the intrinsic chemical properties of the oxidants, such as the electron affinity and pKa values, which result in enhanced catalytic potential for dioxomanganese(V) porphyrin. Our calculations predict a halogenation mechanism in line with that proposed by experiment with an initial hydrogen atom abstraction followed by ligand exchange and halogen transfer.

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