Another Look at Thrombin-GPIba Interaction in Solution Phaseα

Blood ◽  
2005 ◽  
Vol 106 (11) ◽  
pp. 1646-1646
Author(s):  
Subramanian Yegneswaran ◽  
James R. Roberts ◽  
Richard A. McClintock ◽  
Zaverio M. Ruggeri

Abstract Glycoprotein (GP) Ib in the GPIb-IX-V receptor complex is the most abundant binding site for thrombin on the platelet surface. Virtually the entire thrombin binding capacity of GPIb has been shown to reside on the N-terminal region of the GPIba subunit of GPIb. Recently, Celikel et al and Dumas et al independently solved the structure of the thrombin-GPIba complex. Although comparable N-terminal fragments, comprising residues 1–290 of GPIba, were used for crystallization in both studies, significant differences existed between the two structures. Thus, it is still unclear how GPIb interacts with thrombin. In this study we have examined the interaction of GPIba with thrombin in solution phase. Human a-thrombin was labeled active site-specifically with either dansyl (D) dye via a Glu-Gly-Arg (EGR) linker to yield DEGR-thrombin or with a fluorescein or 5-((((2-iodoacetyl)amino)ethyl)amino)naphthalene-1-sulfonic acid dye (IAEDANS) via a Phe-Pro-Arg tether to yield Fluorescein-thrombin and AEDANS-thrombin, respectively. When DEGR-thrombin (initially 100 nM) was titrated with human glycocalicin, the N-terminal fragment of GPIbα compring ~400 residues, the steady state anisotropy of DEGR-thrombin decreased by ~ 22% before reaching a plateau at ~ 100 nM protein suggesting an interaction between Glycocalicin and DEGR-thrombin. A ~ 10% increase in anisotropy of the dansyl moiety was observed when a recombinant wild-type fragment of GPIba (residues 1–290) containing the three sulfated-tyrosines at positions 276, 277 and 279 was titrated into DEGR-thrombin. However, this change in anisotropy was not observed when either a mutant with tyrosine 276 mutated to phenylalanine (Y276F) or a Y279F mutant (named analogously) were titrated into DEGR-thrombin. To examine if dimerization of GPIba was important for thrombin interaction, a construct was made such that residues 1–288 of GPIba were covalently linked through a C-terminal extended sequence containing 4 Cys residues, and expressed as dimer (C65 +). When C65+ was titrated into DEGR-thrombin, the anisotropy of the dansyl probe increased by ~ 29% before reaching a plateau at 130 nM C65+, suggesting that thrombin can bind dimeric GPIba. To elucidate the stoicheometry of the thrombin-GPIba complex, resonance energy transfer (RET) experiments were performed between AEDANS donor-labeled thrombin and Fluorescein acceptor labeled thrombin. The AEDANS-thrombin and Fl-thrombin were mixed in equimolar ratios and then titrated with increasing amounts of GPIba. No change in donor intensity was observed suggestive of the absence of a AEDANS-thrombin- GPIba- Fl-thrombin complex. In conclusion, our data suggests that the GPIba interaction with thrombin can be observed in solution phase using steady state fluorescence by appropriately active site-labeled thrombin. Tyrosine sulfation at positions 276 and 279 are critical for this interaction. This observation is in complete agreement with both crystal structures where the contact site with exosite II of thrombin seems to be mediated by residues 275–279 of GPIba. However, using RET, we could not find a thrombin-GPIba-thrombin complex in solution under the present experimental conditions.

2008 ◽  
Vol 112 (37) ◽  
pp. 11506-11516 ◽  
Author(s):  
L. L. B. Bracco ◽  
M. P. Juliarena ◽  
G. T. Ruiz ◽  
M. R. Féliz ◽  
G. J. Ferraudi ◽  
...  

2020 ◽  
Author(s):  
Mayuri Sadoine ◽  
Mira Reger ◽  
Ka Man Wong ◽  
Wolf B. Frommer

ABSTRACTGenetically encoded fluorescent sugar sensors are valuable tools for the discovery of transporters and for quantitative monitoring of sugar steady-state levels in intact tissues. Genetically encoded Förster Resonance Energy Transfer sensors for glucose have been designed and optimized extensively, and a full series of affinity mutants is available for in vivo studies. However, to date, only a single improved sensor FLIPsuc-90µΔ1 with a Km for sucrose of ∼90 µM is available for sucrose monitoring. This sucrose sensor was engineered on the basis of an Agrobacterium tumefaciens sugar binding protein. Here, we took a two-step approach to first systematically improve the dynamic range of the FLIPsuc nanosensor and then expand the detection range from micromolar to millimolar sucrose concentrations by mutating a key residue in the binding site. The resulting series of sucrose sensors may allow systematic investigation of sucrose transporter candidates and comprehensive in vivo analyses of sucrose concentration in plants. Since FLIPsuc-90µ also detects trehalose in animal cells, the new series of sensors can be used to investigate trehalose transporter candidates and monitor trehalose steady-state levels in vivo as well.


2004 ◽  
Vol 164 (5) ◽  
pp. 661-666 ◽  
Author(s):  
Sabine H. Wimmer-Kleikamp ◽  
Peter W. Janes ◽  
Anthony Squire ◽  
Philippe I.H. Bastiaens ◽  
Martin Lackmann

Eph receptors and their cell membrane–bound ephrin ligands regulate cell positioning and thereby establish or stabilize patterns of cellular organization. Although it is recognized that ephrin clustering is essential for Eph function, mechanisms that relay information of ephrin density into cell biological responses are poorly understood. We demonstrate by confocal time-lapse and fluorescence resonance energy transfer microscopy that within minutes of binding ephrin-A5–coated beads, EphA3 receptors assemble into large clusters. While remaining positioned around the site of ephrin contact, Eph clusters exceed the size of the interacting ephrin surface severalfold. EphA3 mutants with compromised ephrin-binding capacity, which alone are incapable of cluster formation or phosphorylation, are recruited effectively and become phosphorylated when coexpressed with a functional receptor. Our findings reveal consecutive initiation of ephrin-facilitated Eph clustering and cluster propagation, the latter of which is independent of ephrin contacts and cytosolic Eph signaling functions but involves direct Eph–Eph interactions.


Blood ◽  
2009 ◽  
Vol 114 (22) ◽  
pp. 773-773
Author(s):  
Marvin T Nieman

Abstract Abstract 773 Thrombin activates platelets by binding and cleaving protease activated receptors 1 and 4 (PAR1 and PAR4). PAR1 and PAR4 communicate with each other to lower the concentration of thrombin required for PAR4 activation (Nieman Biochemistry, 2008). In addition, PAR1 and PAR4 form homo and heterodimers. However, where these receptors interact has not been defined and it is not known if dimerization influences receptor activation, downstream signaling, or both. Since PAR4 activation is important on human and mouse platelets, we sought to characterize the interaction site between PAR4 homodimers. Using bioluminescence resonance energy transfer (BRET), we mapped the PAR4 homodimer interface. The PAR4 homodimers show a specific interaction as indicated by a hyperbolic BRET signal in response to increasing PAR4-GFP expression with a fixed concentration of PAR4-Rluc. The threshold maximum BRET signal was disrupted in a concentration-dependent manner by unlabeled PAR4. In contrast, the unrelated G-protein coupled receptor, rhodopsin, was unable to disrupt the BRET signal indicating that the disruption of the PAR4 homodimer is a specific interaction. We have mapped the region required for PAR4 homodimer formation using chimeras between rhodopsin and PAR4. PAR4 does not interact with rhodopsin in BRET assays. Using a library of rho-PAR4 chimeras that have the junction at the beginning of transmembrane (TM) 2, 3, 4, 5, 6 or 7, we determined where dimer formation is restored. When the junction is placed at the beginning of TM4 or TM5, the chimera does not interact with PAR4-WT. In contrast, when the junction is moved to the end of TM2, the BRET signal is restored. These results indicate that the region on PAR4 required for homodimer formation encompasses a 63 amino acid region that includes the first extracellular loop, TM3 and the second intracellular loop. These studies establish techniques that may be used to define the interactions between other GPCRs found on the platelet surface. These receptor-receptor interactions may be another level of regulation of agonist activity and platelet function in vivo and may provide novel targets for anti-platelet therapies. Disclosures: No relevant conflicts of interest to declare.


2009 ◽  
Vol 81 (9) ◽  
pp. 1615-1634 ◽  
Author(s):  
José M. G. Martinho ◽  
Telmo J. V. Prazeres ◽  
Leila Moura ◽  
José P. S. Farinha

The fluorescence of a rhodamine X dye covalently linked to the 5' terminus of a 25-mers thymine oligodeoxynucleotide (dT25-ROX), adsorbed on the shell of thermoresponsive core-shell polymer particles, was used to probe the polarity, mobility, and distribution of the oligodeoxynucleotides (ODNs) in the shell. The particles have a glassy core of poly(methyl methacrylate) (PMMA) with a 67-nm radius, and a thermoresponsive shell of poly(N-isopropyl acrylamide) (PNIPAM) whose thickness changes from 42 nm at 11 ºC to 5 nm at 45 ºC. The variation in polarity of the shell with temperature was obtained both from the lifetimes and from the solvatochromic shifts of the dye and shows a sharp transition at the volume phase transition temperature (TVPT) of the PNIPAM shell. Förster resonance energy transfer (FRET) between dT25-ROX and a malachite green (MG)-labeled ODN (dT25-MG) was used to obtain the distribution of the ODNs in the thermoresponsive shell. Our results show that at 23 ºC (below TVPT) the ODNs are distributed inside the shell, sensing an environment similar to water. At this temperature, the PNIPAM shell is composed of hydrated chains with high mobility, as probed by the fluorescence anisotropy of dT25-ROX. By increasing the temperature above TVPT, the shell collapses and the chain mobility drastically slows down owing to the anchoring of the ODN to the dense shell of PNIPAM. Furthermore, FRET shows that the ODNs are absorbed on the 5-nm-thick collapsed shell but extend into the water. The polarity probed by the ROX averages the dyes distributed in the interior of the particle shell and in water, with 60 % of the dyes outside the particle shell (i.e., sensing pure water). Another indication that above the TVPT most of the ODNs are oriented with the dye toward the water phase is that the mobility of the dye covalently bound to the ODNs is identical in water and in the collapsed particle shell. The hybridization efficiency between an ODN supported in the particle shell (by adsorbing the ODN below TVPT and subsequently increasing the temperature above TVPT) and the complementary ODN in solution is identical to that of hybridization in water. This result opens good perspectives toward the use of the core-shell thermoresponsive nanoparticles as supports in DNA bioassays.


2012 ◽  
Vol 17 (6) ◽  
pp. 813-821 ◽  
Author(s):  
Connie S. Lebakken ◽  
Laurie J. Reichling ◽  
Jason M. Ellefson ◽  
Steven M. Riddle

Non–adenosine triphosphate (ATP) competitive, allosteric inhibitors provide a promising avenue to develop highly selective small-molecule kinase inhibitors. Although this class of compounds is growing, detection of such inhibitors can be challenging as standard kinase activity assays preferentially detect compounds that bind to active kinases in an ATP competitive manner. We have previously described a time-resolved fluorescence resonance energy transfer (TR-FRET)–based kinase binding assay using the competitive displacement of ATP competitive active site fluorescent probes (“tracers”). Although this format has gained acceptance, published data with this and related formats are almost entirely without examples of non-ATP competitive compounds. Thus, this study addresses whether this format is useful for non-ATP competitive inhibitors. To this end, 15 commercially available non-ATP competitive inhibitors were tested for their ability to displace ATP competitive probes. Despite the diversity of both compound structures and their respective targets, 14 of the 15 compounds displaced the tracers with IC50 values comparable to literature values. We conclude that such binding assays are well suited for the study of non-ATP competitive inhibitors. In addition, we demonstrate that allosteric inhibitors of BCR-Abl and MEK bind preferentially to the nonphosphorylated (i.e., inactive) form of the kinase, indicating that binding assays may be a preferred format in some cases.


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