scholarly journals Transcriptome analysis of fungicide-responsive gene expression profiles in two Penicillium italicum strains with different response to the sterol demethylation inhibitor (DMI) fungicide prochloraz

BMC Genomics ◽  
2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Tingfu Zhang ◽  
Qianwen Cao ◽  
Na Li ◽  
Deli Liu ◽  
Yongze Yuan
Keyword(s):  
Gene Expression ◽  
Transcriptome Analysis ◽  
Expression Profiles ◽  
Gene Expression Profiles ◽  
Penicillium Italicum ◽  
Responsive Gene ◽  
Different Response ◽  
Demethylation Inhibitor

scholarly journals Transcriptome analysis of gravitational effects on mouse skeletal muscles under microgravity and artificial 1 g onboard environment

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Risa Okada ◽  
Shin-ichiro Fujita ◽  
Riku Suzuki ◽  
Takuto Hayashi ◽  
Hirona Tsubouchi ◽  
...  
Keyword(s):  
Gene Expression ◽  
Muscle Mass ◽  
Muscle Atrophy ◽  
Transcriptome Analysis ◽  
Fiber Type ◽  
Expression Profiles ◽  
Space Station ◽  
Gene Expression Profiles

AbstractSpaceflight causes a decrease in skeletal muscle mass and strength. We set two murine experimental groups in orbit for 35 days aboard the International Space Station, under artificial earth-gravity (artificial 1 g; AG) and microgravity (μg; MG), to investigate whether artificial 1 g exposure prevents muscle atrophy at the molecular level. Our main findings indicated that AG onboard environment prevented changes under microgravity in soleus muscle not only in muscle mass and fiber type composition but also in the alteration of gene expression profiles. In particular, transcriptome analysis suggested that AG condition could prevent the alterations of some atrophy-related genes. We further screened novel candidate genes to reveal the muscle atrophy mechanism from these gene expression profiles. We suggest the potential role of Cacng1 in the atrophy of myotubes using in vitro and in vivo gene transductions. This critical project may accelerate the elucidation of muscle atrophy mechanisms.

scholarly journals High resolution spatial transcriptome analysis by photo-isolation chemistry

2020 ◽  
Author(s):  
Mizuki Honda ◽  
Shinya Oki ◽  
Akihito Harada ◽  
Kazumitsu Maehara ◽  
Kaori Tanaka ◽  
...  
Keyword(s):  
Gene Expression ◽  
Transcriptome Analysis ◽  
Expression Profiles ◽  
Gene Expression Profiles ◽  
Transcriptome Profiling ◽  
Tissue Sections ◽  
Complex Functions ◽  
Multicellular Organisms

ABSTRACTIn multicellular organisms, individual cells are characterized by their gene expression profiles and the spatial interactions among cells enable the elaboration of complex functions. Expression profiling in spatially defined regions is crucial to elucidate cell interactions and functions. Here, we established a transcriptome profiling method coupled with photo-isolation chemistry (PIC) that allows the determination of expression profiles specifically from photo-irradiated regions of whole tissues. PIC uses photo-caged oligodeoxynucleotides for in situ reverse transcription. After photo-irradiation of limited areas, gene expression was detected from at least 10 cells in the tissue sections. PIC transcriptome analysis detected genes specifically expressed in small distinct areas of the mouse embryo. Thus, PIC enables transcriptome profiles to be determined from limited regions at a spatial resolution up to the diffraction limit.

scholarly journals A new approach to construct pathway connected networks and its application in dose responsive gene expression profiles of rat liver regulated by 2,4DNT

BMC Genomics ◽  
2010 ◽  
Vol 11 (Suppl 3) ◽  
pp. S4 ◽  
Author(s):  
Sudhir Chowbina ◽  
Youping Deng ◽  
Junmei Ai ◽  
Xiaogang Wu ◽  
Xin Guan ◽  
...  
Keyword(s):  
Gene Expression ◽  
Rat Liver ◽  
Expression Profiles ◽  
Gene Expression Profiles ◽  
New Approach ◽  
Responsive Gene

scholarly journals Distinct Gene Expression Profiles of Viral- and Nonviral-Associated Merkel Cell Carcinoma Revealed by Transcriptome Analysis

2013 ◽  
Vol 133 (4) ◽  
pp. 936-945 ◽  
Author(s):  
Paul W. Harms ◽  
Rajiv M. Patel ◽  
Monique E. Verhaegen ◽  
Thomas J. Giordano ◽  
Kevin T. Nash ◽  
...  
Keyword(s):  
Gene Expression ◽  
Cell Carcinoma ◽  
Merkel Cell Carcinoma ◽  
Transcriptome Analysis ◽  
Expression Profiles ◽  
Gene Expression Profiles ◽  
Merkel Cell ◽  
Distinct Gene

scholarly journals Transcriptome Analysis of the Gene Expression Profiles Associated with Fungal Keratitis in Mice Based on RNA-Seq

2020 ◽  
Vol 61 (6) ◽  
pp. 32
Author(s):  
Qing Zhang ◽  
Jian Zhang ◽  
Mengting Gong ◽  
Ruolan Pan ◽  
Yanchang Liu ◽  
...  
Keyword(s):  
Gene Expression ◽  
Transcriptome Analysis ◽  
Expression Profiles ◽  
Gene Expression Profiles ◽  
Fungal Keratitis ◽  
Rna Seq

scholarly journals Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals distinct gene expression profiles

2015 ◽  
Vol 136 (3) ◽  
pp. 638-648 ◽  
Author(s):  
Helena Persson ◽  
Andrew T. Kwon ◽  
Jordan A. Ramilowski ◽  
Gilad Silberberg ◽  
Cilla Söderhäll ◽  
...  
Keyword(s):  
Gene Expression ◽  
Transcriptome Analysis ◽  
Childhood Asthma ◽  
Expression Profiles ◽  
Gene Expression Profiles ◽  
Distinct Gene
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