scholarly journals Inbreeding and inbreeding depression of Paeonia decomposita (Paeoniaceae), a threatened endemic plant to China

2019 ◽  
Vol 60 (1) ◽  
Author(s):  
Shi-Quan Wang
Keyword(s):  
Seed Production ◽  
Inbreeding Depression ◽  
Evolutionary Biology ◽  
Seed Set ◽  
Extinction Risk ◽  
Small Populations ◽  
Endemic Plant ◽  
Pollinator Limitation ◽  
Potential Threat ◽  
Selfed Progeny

Abstract Background Small populations are predominantly vulnerable to inbreeding and inbreeding depression (ID). Owing to increased levels of inbreeding on individuals in small populations, ID could decrease the population growth rate, as well as its effective size, and exacerbate the extinction risk. Inbreeding depression remains a crucial area of research in conservation biology, ecology, and evolutionary biology. This study aims to elucidate the reproductive biology, inbreeding, and ID of Paeonia decomposita and to conserve, manage, and improve them better in the future. Results Paeonia decomposita belongs to a xenogamous category and is partially self-compatible; moreover, it requires pollinators for seed production. Lately, the occurrence of pollination and pollinator limitations has affected the seed set. Low seed set primarily correlated with an abnormality of meiosis in the pollen mother cell, moderate to low genetic diversity, drought and extreme weather, pollinator limitation, or carpel space limit. One of the primary reasons for endangered mechanism in P. decomposita is the low seed set under natural conditions. The cumulative value of ID was positive, and outcrossed progeny outperformed selfed progeny. Conclusions Paeonia decomposita requires pollinators to ensure seed production either through autogamy, geitonogamy, or allogamy. It is both allogamous and partially self-compatible, as well as a successful outcrosser. Inbreeding occurs frequently and results in ID, which imposes a potential threat to the survival of populations. Besides, it needs conservation via in situ and natural return methods.

scholarly journals Genetic Allee effects and their interaction with ecological Allee effects

2016 ◽  
Author(s):  
Meike J. Wittmann ◽  
Hanna Stuis ◽  
Dirk Metzler
Keyword(s):  
Population Size ◽  
Inbreeding Depression ◽  
Survival Probability ◽  
Allee Effect ◽  
Extinction Risk ◽  
List Type ◽  
Small Populations ◽  
Allee Effects ◽  
Deleterious Mutations ◽  
Lethal Equivalents

SummaryIt is now widely accepted that genetic processes such as inbreeding depression and loss of genetic variation can increase the extinction risk of small populations. However, it is generally unclear whether extinction risk from genetic causes gradually increases with decreasing population size or whether there is a sharp transition around a specific threshold population size. In the ecological literature, such threshold phenomena are called “strong Allee effects” and they can arise for example from mate limitation in small populations.In this study, we aim to a) develop a meaningful notion of a “strong genetic Allee effect”, b) explore whether and under what conditions such an effect can arise from inbreeding depression due to recessive deleterious mutations, and c) quantify the interaction of potential genetic Allee effects with the well-known mate-finding Allee effect.We define a strong genetic Allee effect as a genetic process that causes a population’s survival probability to be a sigmoid function of its initial size. The inflection point of this function defines the critical population size. To characterize survival-probability curves, we develop and analyze simple stochastic models for the ecology and genetics of small populations.Our results indicate that inbreeding depression can indeed cause a strong genetic Allee effect, but only if individuals carry sufficiently many deleterious mutations (lethal equivalents) on average and if these mutations are spread across sufficiently many loci. Populations suffering from a genetic Allee effect often first grow, then decline as inbreeding depression sets in, and then potentially recover as deleterious mutations are purged. Critical population sizes of ecological and genetic Allee effects appear to be often additive, but even superadditive interactions are possible.Many published estimates for the number of lethal equivalents in birds and mammals fall in the parameter range where strong genetic Allee effects are expected. Unfortunately, extinction risk due to genetic Allee effects can easily be underestimated as populations with genetic problems often grow initially, but then crash later. Also interactions between ecological and genetic Allee effects can be strong and should not be neglected when assessing the viability of endangered or introduced populations.

scholarly journals Strongly deleterious mutations are a primary determinant of extinction risk due to inbreeding depression

2019 ◽  
Author(s):  
Christopher C. Kyriazis ◽  
Robert K. Wayne ◽  
Kirk E. Lohmueller
Keyword(s):  
Genetic Diversity ◽  
Inbreeding Depression ◽  
Extinction Risk ◽  
Fragmented Landscape ◽  
Small Populations ◽  
Deleterious Mutations ◽  
Genetic Rescue ◽  
Isolated Populations ◽  
Large Populations ◽  
Source Populations

AbstractHuman-driven habitat fragmentation and loss have led to a proliferation of small and isolated plant and animal populations with high risk of extinction. One of the main threats to extinction in these populations is inbreeding depression, which is primarily caused by the exposure of recessive deleterious mutations as homozygous by inbreeding. The typical approach for managing these populations is to maintain high genetic diversity, often by translocating individuals from large populations to initiate a ‘genetic rescue.’ However, the limitations of this approach have recently been highlighted by the demise of the gray wolf population on Isle Royale, which was driven to the brink of extinction soon after the arrival of a migrant from the large mainland wolf population. Here, we use a novel population genetic simulation framework to investigate the role of genetic diversity, deleterious variation, and demographic history in mediating extinction risk due to inbreeding depression in small populations. We show that, under realistic models of dominance, large populations harbor high levels of recessive strongly deleterious variation due to these mutations being hidden from selection in the heterozygous state. As a result, when large populations contract, they experience a substantially elevated risk of extinction after these strongly deleterious mutations are exposed by inbreeding. Moreover, we demonstrate that although translocating individuals to small populations is broadly effective as a means to reduce extinction risk, using small or moderate-sized source populations rather than large source populations can greatly increase the effectiveness of genetic rescue due to greater purging in these smaller populations. Our findings challenge the traditional conservation paradigm that focuses on maximizing genetic diversity to reduce extinction risk in favor of a view that emphasizes minimizing strongly deleterious variation. These insights have important implications for managing small and isolated populations in the increasingly fragmented landscape of the Anthropocene.Impact SummaryNumerous threats to extinction exist for small populations, including the detrimental effects of inbreeding. Although much of the focus in reducing these harmful effects in small populations has been on maintaining high genetic diversity, here we use simulations to demonstrate that emphasis should instead be placed on minimizing strongly deleterious variation. More specifically, we show that historically-large populations with high levels of genetic diversity also harbor elevated levels of recessive strongly deleterious mutations hidden in the heterozygous state. Thus, when these populations contract, inbreeding can expose these strongly deleterious mutations as homozygous and lead to severe inbreeding depression and rapid extinction. Moreover, we demonstrate that, although translocating individuals to these small populations to perform a ‘genetic rescue’ is broadly beneficial, the effectiveness of this strategy can be greatly increased by targeting historically-smaller source populations where recessive strongly deleterious mutations have been purged. These results challenge long-standing views on how to best conserve small and isolated populations facing the threat of inbreeding depression, and have immediate implications for preserving biodiversity in the increasingly fragmented landscape of the Anthropocene.

scholarly journals Self-Fertilization, Inbreeding, and Yield in Alfalfa Seed Production

2021 ◽  
Vol 12 ◽  
Author(s):  
Molly E. Dieterich Mabin ◽  
Johanne Brunet ◽  
Heathcliffe Riday ◽  
Lauren Lehmann
Keyword(s):  
Pacific Northwest ◽  
Seed Production ◽  
Inbreeding Depression ◽  
Seed Yield ◽  
Seed Set ◽  
Central Valley ◽  
Selfing Rate ◽  
Alfalfa Seed ◽  
The Impact ◽  
Number Of Seeds

Selfing (self-pollination) is the ultimate form of inbreeding, or mating among close relatives. Selfing can create yield loss when inbreeding depression, defined as a lower survival and reproduction of inbred relative to outbred progeny, is present. To determine the impact of selfing in alfalfa (Medicago sativa L.), we quantified the selfing rate of 32 alfalfa seed production fields located in three regions, namely, the Pacific Northwest (PNW), the Central Valley of California (CEV), and the Imperial Valley of California (IMP). Selfing rates (the proportion of selfed seeds) varied between 5.3 and 30% with an average of 12.2% over the 32 seed production fields. In both the parents and their progeny, we observed an excess of heterozygotes relative to Hardy–Weinberg expectations. We detected notable levels of inbreeding in parents (0.231 ± 0.007 parental inbreeding coefficient) and progeny (0.229 ± 0.005). There were a 15% decrease in the number of seeds per stem (seed set) and a 13% decline in the number of seeds per pod in selfed relative to outcrossed stems, but negligible inbreeding depression for pods per raceme and seed weight. The number of racemes on selfed stems increased significantly in fields with greater selfing rates, supporting the presence of geitonogamous or among flower selfing. Despite the significant level of inbreeding depression, seed set did not decrease in fields with higher selfing rates, where the greater number of racemes on the selfed stems increased the seed set. The effects of the field selfing rate on the seed yield metrics were mostly indirect with direct effects of the number of racemes per stem. Available data indicate that the majority of selfing in alfalfa is pollinator-mediated, and thus, eliminating selfing in alfalfa seed production would require the selection of self-incompatible varieties, which, by eliminating inbreeding depression, would provide a 15% potential increase in seed yield and an increase in future hay yield.

scholarly journals Spatiotemporal Variations in Seed Set and Pollen Limitation in Populations of the Rare Generalist Species Polemonium caeruleum in Poland

2022 ◽  
Vol 12 ◽  
Author(s):  
Justyna Ryniewicz ◽  
Katarzyna Roguz ◽  
Paweł Mirski ◽  
Emilia Brzosko ◽  
Mateusz Skłodowski ◽  
...  
Keyword(s):  
Reproductive Success ◽  
Population Size ◽  
Seed Production ◽  
Seed Set ◽  
Pollen Limitation ◽  
Monthly Precipitation ◽  
Small Populations ◽  
Flower Visitors ◽  
Visitation Frequency ◽  
Average Monthly Precipitation

A vast majority of angiosperms are pollinated by animals, and a decline in the number and diversity of insects often affects plant reproduction through pollen limitation. This phenomenon may be particularly severe in rare plant species, whose populations are shrinking. Here, we examined the variability in factors shaping reproductive success and pollen limitation in red-listed Polemonium caeruleum L. During a 5-year study in several populations of P. caeruleum (7–15, depending on year), we assessed the degree of pollen limitation based on differences in seed set between open-pollinated (control) and hand-pollinated flowers. We analysed the effects of flower visitors, population size, and meteorological data on plant reproductive success and pollen limitation. Our study showed that pollen limitation rarely affected P. caeruleum populations, and was present mainly in small populations. Pollen limitation index was negatively affected by the size of population, visitation frequency of all insects, and when considering the visitation frequency of individual groups, also by honeybee visits. Seed production in control treatment was positively influenced by the population size, average monthly precipitation in June and visits of hoverflies, while visits of honeybees, average monthly temperature in September, and average monthly precipitation in August influenced seed production negatively. As generalist plant P. caeruleum can be pollinated by diverse insect groups, however, in small populations their main visitors, the honeybees and bumblebees, may be less attracted, eventually leading to the disappearance of these populations. In pollination of P. caeruleum managed honeybees may play a dual role: while they are the most frequent and efficient flower visitors, their presence decreases seed set in open-pollinated flowers, which is most probably related to efficient pollen collection by these insects.

Delayed autonomous selfing and inbreeding depression in the Australian annual Hibiscus trionum var. vesicarius (Malvaceae)

2006 ◽  
Vol 54 (1) ◽  
pp. 27 ◽  
Author(s):  
Leahwyn Seed ◽  
Glenda Vaughton ◽  
Mike Ramsey
Keyword(s):  
Inbreeding Depression ◽  
Pollen Germination ◽  
Seed Set ◽  
Pollen Grains ◽  
Reproductive Assurance ◽  
Selfed Progeny ◽  
Delayed Selfing ◽  
Hibiscus Trionum ◽  
Self Compatibility ◽  
Outcrossing Species

The Australian annual, Hibiscus trionum var. vesicarius, produces large, showy flowers typical of an outcrossing species, yet flowers autonomously self-pollinate. We used experimental pollinations to examine self-compatibility, inbreeding depression and the efficiency and mechanism of autonomous selfing. Seed set of self- or cross-pollinated flowers did not differ, indicating that plants were fully self-compatible. Seed set following autonomous selfing varied among plants, and was 11–103% of that following hand-selfing. Autonomous selfing was delayed, and styles curved and stigmas contacted the anthers before flowers closed. Delayed selfing was facultative and curvature depended on the number of pollen grains on stigmas, with 50 or more grains preventing curvature. Both self- and cross-pollen prevented curvature. Similarly to unpollinated styles, styles that were pollinated with dead pollen curved fully, indicating that either pollen germination or pollen-tube growth prevents curvature. Within flowers, the five styles acted independently, depending on the amount of pollination that each received. Although plants exhibit a high potential for selfing, crossed progeny outperformed selfed progeny and cumulative inbreeding depression was 0.64, which is high for a self-compatible annual. Despite this high inbreeding depression, delayed selfing would be advantageous under variable pollinator conditions, providing reproductive assurance.

Inbreeding reduces reproductive fitness

2017 ◽  
Author(s):  
Richard Frankham ◽  
Jonathan D. Ballou ◽  
Katherine Ralls ◽  
Mark D. B. Eldridge ◽  
Michele R. Dudash ◽  
...  
Keyword(s):  
Natural Selection ◽  
Inbreeding Depression ◽  
Reproductive Fitness ◽  
Heterozygote Advantage ◽  
Small Populations ◽  
Population Bottlenecks ◽  
Risk Of Extinction ◽  
Survival And Reproduction

The harmful impacts of inbreeding are generally greater in species that naturally outbreed compared to those in inbreeding species, greater in stressful than benign environments, greater for fitness than peripheral traits, and greater for total fitness compared to its individual components. Inbreeding reduces survival and reproduction (i.e., it causes inbreeding depression), and thereby increases the risk of extinction. Inbreeding depression is due to increased homozygosity for harmful alleles and at loci exhibiting heterozygote advantage. Natural selection may remove (purge) the alleles that cause inbreeding depression, especially following inbreeding or population bottlenecks, but it has limited effects in small populations and usually does not completely eliminate inbreeding depression. Inbreeding depression is nearly universal in sexually reproducing organisms that are diploid or have higher ploidies.

scholarly journals Extinction Risk Assessment of the Greek Endemic Flora

Biology ◽  
2021 ◽  
Vol 10 (3) ◽  
pp. 195 ◽  
Author(s):  
Konstantinos Kougioumoutzis ◽  
Ioannis P. Kokkoris ◽  
Maria Panitsa ◽  
Arne Strid ◽  
Panayotis Dimopoulos
Keyword(s):  
Risk Assessment ◽  
Land Use ◽  
Protected Area ◽  
Extinction Risk ◽  
Endemic Plant ◽  
The Past ◽  
Extinction Risk Assessment ◽  
Endemic Flora ◽  
Biodiversity Decline ◽  
Iucn Criteria

Human-induced biodiversity decline has been on the rise for the past 250 years, due to various causes. What is equally troubling, is that we are unaware which plants are threatened and where they occur. Thus, we are far from reaching Aichi Biodiversity Target 2, i.e., assessing the extinction risk of most species. To that end, based on an extensive occurrence dataset, we performed an extinction risk assessment according to the IUCN Criteria A and B for all the endemic plant taxa occurring in Greece, one of the most biodiverse countries in Europe, in a phylogenetically-informed framework and identified the areas needing conservation prioritization. Several of the Greek endemics are threatened with extinction and fourteen endemics need to be prioritized, as they are evolutionary distinct and globally endangered. Mt. Gramos is identified as the most important conservation hotspot in Greece. However, a significant portion of the identified conservation hotspots is not included in any designated Greek protected area, meaning that the Greek protected areas network might need to be at least partially redesigned. In the Anthropocene era, where climate and land-use change are projected to alter biodiversity patterns and may force many species to extinction, our assessment provides the baseline for future conservation research, ecosystem services maintenance, and might prove crucial for the timely, systematic and effective aversion of plant extinctions in Greece.

scholarly journals Evidence for the partial dominance of viability genes contributing to inbreeding depression in Mimulus guttatus.

Genetics ◽  
1994 ◽  
Vol 136 (1) ◽  
pp. 323-331
Author(s):  
Y B Fu ◽  
K Ritland
Keyword(s):  
Inbreeding Depression ◽  
Wild Plant ◽  
Mimulus Guttatus ◽  
Selfed Progeny ◽  
Partial Dominance ◽  
Complete Dominance ◽  
Model Free ◽  
Segregation Ratios ◽  
Marker Loci ◽  
In The Wild

Abstract The relative importance of different modes of gene expression of viability genes contributing to inbreeding depression was investigated in the wild plant, Mimulus guttatus. Viability genes were identified by self-fertilizing 31 outbred plants, each heterozygous for three to nine unlinked allozyme markers, and analyzing segregation ratios of selfed progeny at maturity for deviations from 1:2:1 ratios. In this study, 24 linkages of viability genes to marker loci were detected. To infer the nature of gene action for these viability genes, a "model-free" graphical method was developed that examines the "space" of segregation ratios allowed by each of seven selection models (i.e., overdominance, complete recessivity, partial recessivity, additivity, partial dominance, complete dominance and underdominance). Using this method, we found that, of 24 linkages detected, 18 were consistent with either partial dominance, complete dominance or underdominance. Six were consistent with either partial recessivity, complete recessivity or overdominance. This finding indicates that, in these chromosomal segments identified by allozyme markers, partial dominance plays the predominant role in inbreeding depression. This is inconsistent with either the dominance or overdominance hypotheses proposed to account for inbreeding depression.

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