scholarly journals Draft genome sequencing of the sugarcane hybrid SP80-3280

F1000Research ◽  
2017 ◽  
Vol 6 ◽  
pp. 861 ◽  
Author(s):  
Diego Mauricio Riaño-Pachón ◽  
Lucia Mattiello
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Commercial Cultivar ◽  
Link Type ◽  
Long Reads ◽  
Genomic Analyses ◽  
Draft Genome Sequencing

Sugarcane commercial cultivar SP80-3280 has been used as a model for genomic analyses in Brazil. Here we present a draft genome sequence employing Illumina TruSeq Synthetic Long reads. The dataset is available from NCBI BioProject with accession PRJNA272769.

scholarly journals Draft genome sequencing of the sugarcane hybrid SP80-3280

F1000Research ◽  
2017 ◽  
Vol 6 ◽  
pp. 861 ◽  
Author(s):  
Diego Mauricio Riaño-Pachón ◽  
Lucia Mattiello
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Commercial Cultivar ◽  
Link Type ◽  
Long Reads ◽  
Genomic Analyses ◽  
Draft Genome Sequencing

Sugarcane commercial cultivar SP80-3280 has been used as a model for genomic analyses in Brazil. Here we present a draft genome sequence employing Illumina TruSeq Synthetic Long reads. The dataset is available from NCBI BioProject with accession PRJNA272769.

scholarly journals Draft Genome Sequence ofBacillus licheniformisS127, Isolated from a Sheep Udder Clinical Infection

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Ievgenia Ostrov ◽  
Noa Sela ◽  
Mor Freed ◽  
Nihaya Khateb ◽  
Miriam Kott-Gutkowski ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Bacillus Licheniformis ◽  
Dairy Products ◽  
Draft Genome ◽  
Dairy Industry ◽  
Genetic Data ◽  
Draft Genome Sequence ◽  
Clinical Infection ◽  
Draft Genome Sequencing

Bacillus licheniformisis a Gram-positive biofilm- and endospore-forming bacterium, which contaminates dairy products and can be pathogenic to humans. The draft genome sequencing forB. licheniformisstrain S127 is reported here, providing genetic data relevant to the ability of this strain to sustain its survival in the dairy industry.

scholarly journals Draft Genome Sequencing of the Highly Halotolerant and Allopolyploid Yeast Zygosaccharomyces rouxii NBRC 1876

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Atsushi Sato ◽  
Kenichiro Matsushima ◽  
Kenshiro Oshima ◽  
Masahira Hattori ◽  
Yasuji Koyama
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Food Production ◽  
Draft Genome ◽  
Soy Sauce ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Zygosaccharomyces Rouxii ◽  
High Concentrations ◽  
Draft Genome Sequencing

ABSTRACT The highly halotolerant and allopolyploid yeast Zygosaccharomyces rouxii is industrially used for the food production in high concentrations of salt, such as brewing soy sauce and miso paste. Here, we report the draft genome sequence of Z. rouxii NBRC 1876 isolated from miso paste.

scholarly journals Draft Genome Sequence of Herminiimonas contaminans Strain CCM 7991T, a Biopharmaceutical Contaminant

2021 ◽  
Vol 10 (7) ◽  
Author(s):  
Luis Johnson Kangale ◽  
Rita Zgheib ◽  
Eric Ghigo ◽  
Didier Raoult ◽  
Pierre-Edouard Fournier
Keyword(s):  
Production Process ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Bacterial Species ◽  
Draft Genome ◽  
Noncoding Rnas ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Biopharmaceutical Production ◽  
Draft Genome Sequencing

ABSTRACT Herminiimonas contaminans was described as a new bacterial species, a contaminant isolated from a biopharmaceutical production process in Sweden. Since the genome sequence was not available, we performed draft genome sequencing. The genome of strain CCM 7991T (=CCUG 53591T = DSM 28178T = Marseille-Q4544T) was 4,038,814 bp long, with a G+C content of 53.9%; a total of 3,860 genes were identified, along with 3 rRNAs, 44 tRNAs, and 4 noncoding RNAs (ncRNAs).

scholarly journals Draft Genome Sequencing of Ascomycetes Yeast Pichia membranifaciens KS47-1, Which Shows High Acetate Resistance in Lignocellulosic Feedstock Hydrolysate

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Masaaki Konishi ◽  
Tomoko Arakawa ◽  
Yuta Kato ◽  
Masashi Ishida ◽  
Jun-ichi Horiuchi
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Growth Inhibitors ◽  
Pichia Membranifaciens ◽  
Lignocellulosic Feedstock ◽  
High Concentrations ◽  
Draft Genome Sequencing

ABSTRACT Pichia membranifaciens KS47-1 is capable of growing on hydrolysate containing high concentrations of acetate and other growth inhibitors. To reveal the acetate-resistant associate genes of strain KS47-1, we present the 11.4-Mb draft genome sequence.

scholarly journals Draft Genome Sequence of Dermatophagoides pteronyssinus, the European House Dust Mite

2017 ◽  
Vol 5 (32) ◽  
Author(s):  
Rose Waldron ◽  
Jamie McGowan ◽  
Natasha Gordon ◽  
Charley McCarthy ◽  
E. Bruce Mitchell ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Gene Prediction ◽  
Draft Genome ◽  
Dermatophagoides Pteronyssinus ◽  
Mite Species ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Genomic Analyses ◽  
Dust Mite ◽  
Functional Analyses

ABSTRACT Dermatophagoides pteronyssinus is the European dust mite and a major source of human allergens. Here, we present the first draft genome sequence of the mite, as well as the ab initio gene prediction and functional analyses that will facilitate comparative genomic analyses with other mite species.

scholarly journals Draft Genome Sequence of Streptomyces mexicanus Strain Q0842, Isolated from Human Skin

2020 ◽  
Vol 9 (44) ◽  
Author(s):  
Manon Boxberger ◽  
Mariem Ben Khedher ◽  
Anthony Levasseur ◽  
Bernard La Scola
Keyword(s):  
Human Skin ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Bacterial Species ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Swab Sample ◽  
Partial Genome Sequence ◽  
Partial Genome

ABSTRACT In 2003, Streptomyces mexicanus was reported as a novel xylanolytic bacterial species isolated from soil; a partial genome sequence was determined. In 2019, a strain from the same species was isolated from a hand skin swab sample from a healthy French woman. Genome sequencing revealed an 8,011,832-bp sequence with a GC content of 72.5%.

scholarly journals Draft Genome Sequence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Strain from a Returned Traveler from Pakistan

2020 ◽  
Vol 9 (31) ◽  
Author(s):  
Samantha Hao ◽  
Tess Veuthey ◽  
Saharai Caldera ◽  
Paula Hayakawa Serpa ◽  
Barbara Haller ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Drug Resistant ◽  
Content Type ◽  
Salmonella Enterica Serovar Typhi ◽  
Extensively Drug Resistant

ABSTRACT We report a draft genome sequence of extensively drug-resistant (XDR) Salmonella enterica serotype Typhi isolated from a returned traveler from Pakistan who developed sepsis. Whole-genome sequencing revealed relatedness to a previously reported outbreak in Pakistan and identified the blaCTX-M-15 and qnrS resistance genes.

scholarly journals Draft Genome Sequence of a Mycobacterium porcinum Strain Isolated from a Pet Cat with Atypical Mycobacterial Panniculitis

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Anthony Mannion ◽  
Tina McCollester ◽  
Alexander Sheh ◽  
Zeli Shen ◽  
Hilda Holcombe ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Fast Growing

A fast-growing Mycobacterium species was cultured from draining, purulent lesions on the caudal abdomen of a 12-year-old male domestic long-haired cat. Whole-genome sequencing identified the organism as Mycobacterium porcinum.

scholarly journals Draft Genome Sequence of Clostridium sp. Strain chh4-2 Isolated from Human Feces

2018 ◽  
Vol 6 (8) ◽  
Author(s):  
Chien-Hsun Huang ◽  
Jong-Shian Liou ◽  
Chun-Lin Wang ◽  
Lina Huang
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Fecal Sample ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Human Feces ◽  
Content Type ◽  
Old Adult

ABSTRACT Here, we report the draft genome sequence of a Clostridium sp. strain isolated from a fecal sample of a 34-year-old adult male in Taiwan. This strain may represent a new bacterium, as suggested by a comparison based on whole-genome sequencing. The genome assembly comprised 6,089,737 bp, with a 45.63% G+C content.

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