scholarly journals Genetic variation and differentiation of floral morphology in wild Primula sieboldii evaluated by image analysis data and SSR markers

2008 ◽  
Vol 58 (3) ◽  
pp. 301-307 ◽  
Author(s):  
Yasuko Yoshida ◽  
Masanori Honjo ◽  
Naoko Kitamoto ◽  
Ryo Ohsawa
Keyword(s):  
Image Analysis ◽  
Genetic Variation ◽  
Ssr Markers ◽  
Floral Morphology ◽  
Analysis Data ◽  
Primula Sieboldii

scholarly journals Image data of crumb structure of bread from flour of czech spring wheat cultivars

2011 ◽  
Vol 22 (No. 4) ◽  
pp. 133-142 ◽  
Author(s):  
I. Švec ◽  
M. Hrušková
Keyword(s):  
Image Analysis ◽  
Image Data ◽  
Analysis Data ◽  
Wheat Cultivars ◽  
Rheological Measurements ◽  
Class A ◽  
Bread Volume ◽  
Class B ◽  
Crumb Structure

Abstract: Baking quality of flour from six wheat cultivars (harvest 2002 and 2003), belonging to the quality classes A and B, was evaluated using the fermented dough test. Analytical traits of kernel and flour showed differences between the classes which were confirmed by the baking test with the full-bread-formula according to Czech method. In addition to standard methods of the bread parameters description (specific bread volume and bread shape measurements) rheological measurements of penetrometer and image analysis were used in effort to differentiate wheat samples into the quality classes. The results of the baking test proved significant differences in specific bread volumes – the highest volume in class A was obtained with the cultivar Vinjet and in class B with SG-S1098 – approx. 410 and 420 ml/100 g. Although significant correlations among image analysis data and specific bread volume having been proved, any image analysis parameter did not distinguish the quality classes. Only the penetronetric measurements made with bread crumb were suitable for such purpose (r = 0.9083; for  = 0.01). Among image analysis data the total cell area of the crumb had the strongest correlation with specific bread volume (r = 0.7840; for α = 0.01).    

scholarly journals Genetic variation within and between populations of a desert poplar (Populus euphratica) revealed by SSR markers

2011 ◽  
Vol 68 (6) ◽  
pp. 1143-1149 ◽  
Author(s):  
Juan Wang ◽  
Zhijun Li ◽  
Qiuhong Guo ◽  
Guangpeng Ren ◽  
Yuxia Wu
Keyword(s):  
Genetic Variation ◽  
Ssr Markers ◽  
Populus Euphratica

scholarly journals Hybrid identification and genetic variation of Elymus sibiricus hybrid populations using EST-SSR markers

Hereditas ◽  
2017 ◽  
Vol 154 (1) ◽  
Author(s):  
Xuhong Zhao ◽  
Junchao Zhang ◽  
Zongyu Zhang ◽  
Yanrong Wang ◽  
Wengang Xie
Keyword(s):  
Genetic Variation ◽  
Ssr Markers ◽  
Hybrid Identification ◽  
Elymus Sibiricus

scholarly journals Comparison of the effectiveness of ISJ and SSR markers and detection of outlier loci in conservation genetics ofPulsatilla patenspopulations

PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e2504 ◽  
Author(s):  
Katarzyna Bilska ◽  
Monika Szczecińska
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Conservation Genetics ◽  
Ssr Markers ◽  
Full Range ◽  
Mantel Test ◽  
Evolutionary Potential ◽  
Functional Variation ◽  
Genetics Research ◽  
Outlier Loci

BackgroundResearch into the protection of rare and endangered plant species involves genetic analyses to determine their genetic variation and genetic structure. Various categories of genetic markers are used for this purpose. Microsatellites, also known as simple sequence repeats (SSR), are the most popular category of markers in population genetics research. In most cases, microsatellites account for a large part of the noncoding DNA and exert a neutral effect on the genome. Neutrality is a desirable feature in evaluations of genetic differences between populations, but it does not support analyses of a population’s ability to adapt to a given environment or its evolutionary potential. Despite the numerous advantages of microsatellites, non-neutral markers may supply important information in conservation genetics research. They are used to evaluate adaptation to specific environmental conditions and a population’s adaptive potential. The aim of this study was to compare the level of genetic variation inPulsatilla patenspopulations revealed by neutral SSR markers and putatively adaptive ISJ markers (intron-exon splice junction).MethodsThe experiment was conducted on 14 Polish populations ofP. patensand threeP. patenspopulations from the nearby region of Vitebsk in Belarus. A total of 345 individuals were examined. Analyses were performed with the use of eight SSR primers specific toP. patensand three ISJ primers.ResultsSSR markers revealed a higher level of genetic variation than ISJ markers (He= 0.609,He= 0.145, respectively). An analysis of molecular variance (AMOVA) revealed that, the overall genetic diversity between the analyzed populations defined by parametersFSTand ΦPTfor SSR (20%) and ΦPTfor ISJ (21%) markers was similar. Analysis conducted in theStructureprogram divided analyzed populations into two groups (SSR loci) and three groups (ISJ markers). Mantel test revealed correlations between the geographic distance and genetic diversity of Polish populations ofP. patensfor ISJ markers, but not for SSR markers.ConclusionsThe results of the present study suggest that ISJ markers can complement the analyses based on SSRs. However, neutral and adaptive markers should not be alternatively applied. Neutral microsatellite markers cannot depict the full range of genetic variation in a population because they do not enable to analyze functional variation. Although ISJ markers are less polymorphic, they can contribute to the reliability of analyses based on SSRs.

scholarly journals Dataset of SSR markers for ISSR-Suppression-PCR to detect genetic variation in Garcinia mangostana L. in Peninsular Malaysia

Data in Brief ◽  
2016 ◽  
Vol 8 ◽  
pp. 1438-1442
Author(s):  
Sri A’jilah Samsir ◽  
Hamidun Bunawan ◽  
Choong Chee Yen ◽  
Normah Mohd Noor
Keyword(s):  
Genetic Variation ◽  
Ssr Markers ◽  
Peninsular Malaysia ◽  
Garcinia Mangostana ◽  
Suppression Pcr
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