scholarly journals Genome-Wide SNP Identification and Characterization in Two Soybean Cultivars with Contrasting Mungbean Yellow Mosaic India Virus Disease Resistance Traits

PLoS ONE ◽  
2015 ◽  
Vol 10 (4) ◽  
pp. e0123897 ◽  
Author(s):  
Chandra Bhan Yadav ◽  
Priyanka Bhareti ◽  
Mehanathan Muthamilarasan ◽  
Minakshi Mukherjee ◽  
Yusuf Khan ◽  
...  
Keyword(s):  
Disease Resistance ◽  
Virus Disease ◽  
Soybean Cultivars ◽  
Genome Wide ◽  
Identification And Characterization ◽  
Resistance Traits

Genome wide association mapping of agro-morphological and disease resistance traits in sugarcane

Euphytica ◽  
2014 ◽  
Vol 202 (2) ◽  
pp. 269-284 ◽  
Author(s):  
M. Gouy ◽  
Y. Rousselle ◽  
A. Thong Chane ◽  
A. Anglade ◽  
S. Royaert ◽  
...  
Keyword(s):  
Disease Resistance ◽  
Association Mapping ◽  
Genome Wide Association ◽  
Genome Wide ◽  
Resistance Traits

scholarly journals Genetic Dissection of Grain Nutritional Traits and Leaf Blight Resistance in Rice

Genes ◽  
2019 ◽  
Vol 10 (1) ◽  
pp. 30 ◽  
Author(s):  
Gwen Iris Descalsota-Empleo ◽  
Abd Aziz Shamsudin Noraziyah ◽  
Ian Paul Navea ◽  
Chongtae Chung ◽  
Maria Stefanie Dwiyanti ◽  
...  
Keyword(s):  
Disease Resistance ◽  
Association Analysis ◽  
Leaf Blight ◽  
Genome Wide Association ◽  
Anthocyanin Content ◽  
Phenotypic Variance ◽  
Genome Wide Association Analysis ◽  
Genome Wide ◽  
Colored Rice ◽  
Resistance Traits

Colored rice is rich in nutrition and also a good source of valuable genes/quantitative trait loci (QTL) for nutrition, grain quality, and pest and disease resistance traits for use in rice breeding. Genome-wide association analysis using high-density single nucleotide polymorphism (SNP) is useful in precisely detecting QTLs and genes. We carried out genome-wide association analysis in 152 colored rice accessions, using 22,112 SNPs to map QTLs for nutritional, agronomic, and bacterial leaf blight (BLB) resistance traits. Wide variations and normal frequency distributions were observed for most of the traits except anthocyanin content and BLB resistance. The structural and principal component analysis revealed two subgroups. The linkage disequilibrium (LD) analysis showed 74.3% of the marker pairs in complete LD, with an average LD distance of 1000 kb and, interestingly, 36% of the LD pairs were less than 5 Kb, indicating high recombination in the panel. In total, 57 QTLs were identified for ten traits at p < 0.0001, and the phenotypic variance explained (PVE) by these QTLs varied from 9% to 18%. Interestingly, 30 (53%) QTLs were co-located with known or functionally-related genes. Some of the important candidate genes for grain Zinc (Zn) and BLB resistance were OsHMA9, OsMAPK6, OsNRAMP7, OsMADS13, and OsZFP252, and Xa1, Xa3, xa5, xa13 and xa26, respectively. Red rice genotype, Sayllebon, which is high in both Zn and anthocyanin content, could be a valuable material for a breeding program for nutritious rice. Overall, the QTLs identified in our study can be used for QTL pyramiding as well as genomic selection. Some of the novel QTLs can be further validated by fine mapping and functional characterization. The results show that pigmented rice is a valuable resource for mineral elements and antioxidant compounds; it can also provide novel alleles for disease resistance as well as for yield component traits. Therefore, large opportunities exist to further explore and exploit more colored rice accessions for use in breeding.

scholarly journals Regional heritability mapping and genome-wide association identify loci for complex growth, wood and disease resistance traits in Eucalyptus

2016 ◽  
Vol 213 (3) ◽  
pp. 1287-1300 ◽  
Author(s):  
Rafael Tassinari Resende ◽  
Marcos Deon Vilela Resende ◽  
Fabyano Fonseca Silva ◽  
Camila Ferreira Azevedo ◽  
Elizabete Keiko Takahashi ◽  
...  
Keyword(s):  
Disease Resistance ◽  
Genome Wide Association ◽  
Genome Wide ◽  
Resistance Traits

Genome-Wide Analysis of NBS-Encoding Disease Resistance Genes in Maize Inbred Line B73

2009 ◽  
Vol 35 (3) ◽  
pp. 566-570 ◽  
Author(s):  
Jie-Ming WANG ◽  
Hai-Yang JIANG ◽  
Yang ZHAO ◽  
Yan XIANG ◽  
Su-Wen ZHU ◽  
...  
Keyword(s):  
Disease Resistance ◽  
Inbred Line ◽  
Resistance Genes ◽  
Disease Resistance Genes ◽  
Maize Inbred Line ◽  
Genome Wide Analysis ◽  
Genome Wide

Comparative Mapping of Three Bacterial, Three Fungal, and One Virus Disease-resistance Genes in Common Bean

HortScience ◽  
1998 ◽  
Vol 33 (3) ◽  
pp. 547a-547
Author(s):  
Geunhwa Jung ◽  
James Nienhuis ◽  
Dermot P. Coyne ◽  
H.M. Ariyarathne
Keyword(s):  
Disease Resistance ◽  
Common Bean ◽  
Pseudomonas Syringae ◽  
Resistance Genes ◽  
Fungal Pathogens ◽  
Xanthomonas Campestris ◽  
Virus Disease ◽  
Disease Resistance Genes ◽  
Brown Spot ◽  
Viral Pathogen

Common bacterial blight (CBB), bacterial brown spot (BBS), and halo blight (HB), incited by the bacterial pathogens Xanthomonas campestris pv. phaseoli (Smith) Dye, Pseodomonas syringae pv. syringa, and Pseudomonas syringae pv. phaseolicola, respectively are important diseases of common bean. In addition three fungal pathogens, web blight (WB) Thanatephorus cucumeris, rust Uromyces appendiculatus, and white mold (WM) Sclerotinia sclerotiorum, are also destructive diseases attacking common bean. Bean common mosaic virus is also one of most major virus disease. Resistance genes (QTLs and major genes) to three bacterial (CBB, BBS, and HB), three fungal (WB, rust, and WM), and one viral pathogen (BCMV) were previously mapped in two common bean populations (BAC 6 × HT 7719 and Belneb RR-1 × A55). The objective of this research was to use an integrated RAPD map of the two populations to compare the positions and effect of resistance QTL in common bean. Results indicate that two chromosomal regions associated with QTL for CBB resistance mapped in both populations. The same chromosomal regions associated with QTL for disease resistance to different pathogens or same pathogens were detected in the integrated population.

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