scholarly journals Genetic Diversity and Spatial Genetic Structure of the Grassland Perennial Saxifraga granulata along Two River Systems

PLoS ONE ◽  
2015 ◽  
Vol 10 (6) ◽  
pp. e0130463 ◽  
Author(s):  
Sascha van der Meer ◽  
Hans Jacquemyn
Silva Fennica ◽  
2018 ◽  
Vol 52 (5) ◽  
Author(s):  
Hamed Yousefzadeh ◽  
Rasta Rajaei ◽  
Anna Jasińska ◽  
Łukasz Walas ◽  
Yann Fragnière ◽  
...  

Riparian trees, especially relict trees, are attractive and important for research to understand both past and recent biogeographical and evolutionary processes. Our work is the first study to elucidate the genetic diversity and spatial genetic structure of the canopy-dominating riparian (Juglandaceae) along two altitudinal gradients in different river systems of the Hyrcanian forest, which is one of the most important refugium of relict trees in Western Eurasia. Altitudinal gradients were chosen along two river systems at 100, 400 and 900 m a.s.l. Leaf samples were collected from 116 trees, and the genetic diversity was evaluated with eight SSR markers. Overall, 39 alleles were identified for all of the populations studied. The observed heterozygosity (Ho) varied from 0.79 to 0.87 (with a mean of 0.83). The results of the AMOVA analysis indicated that the variation within populations was 88%, whereas the variation among populations was 12% for all of the gradients. A structure analysis indicated that 93% of the trees were grouped in the same gradient. The genetic distance based on Fst confirmed the structure result and indicated a high rate of gene flow among the investigated populations. Based on high gene flow (low differentiation of the population along the same river) and the clearly distinct genetic structure of the investigated gradients, it can be concluded that rivers are the main seed dispersal vector among populations. The genetic diversity of did not show any trend from upstream to downstream. The high level of gene flow and uniform genetic diversity along each river suggest the “classical” metapopulation structure of the species. Pterocarya fraxinifoliaP. fraxinifoliaP. fraxinifolia


Heredity ◽  
2020 ◽  
Vol 126 (1) ◽  
pp. 63-76
Author(s):  
Sarah M. Griffiths ◽  
Mark J. Butler ◽  
Donald C. Behringer ◽  
Thierry Pérez ◽  
Richard F. Preziosi

AbstractUnderstanding population genetic structure can help us to infer dispersal patterns, predict population resilience and design effective management strategies. For sessile species with limited dispersal, this is especially pertinent because genetic diversity and connectivity are key aspects of their resilience to environmental stressors. Here, we describe the population structure of Ircinia campana, a common Caribbean sponge subject to mass mortalities and disease. Microsatellites were used to genotype 440 individuals from 19 sites throughout the Greater Caribbean. We found strong genetic structure across the region, and significant isolation by distance across the Lesser Antilles, highlighting the influence of limited larval dispersal. We also observed spatial genetic structure patterns congruent with oceanography. This includes evidence of connectivity between sponges in the Florida Keys and the southeast coast of the United States (>700 km away) where the oceanographic environment is dominated by the strong Florida Current. Conversely, the population in southern Belize was strongly differentiated from all other sites, consistent with the presence of dispersal-limiting oceanographic features, including the Gulf of Honduras gyre. At smaller spatial scales (<100 km), sites showed heterogeneous patterns of low-level but significant genetic differentiation (chaotic genetic patchiness), indicative of temporal variability in recruitment or local selective pressures. Genetic diversity was similar across sites, but there was evidence of a genetic bottleneck at one site in Florida where past mass mortalities have occurred. These findings underscore the relationship between regional oceanography and weak larval dispersal in explaining population genetic patterns, and could inform conservation management of the species.


Plant Biology ◽  
2014 ◽  
Vol 16 (5) ◽  
pp. 1005-1013 ◽  
Author(s):  
C. A. Dettori ◽  
S. Sergi ◽  
E. Tamburini ◽  
G. Bacchetta

Forests ◽  
2021 ◽  
Vol 13 (1) ◽  
pp. 24
Author(s):  
Seung-Beom Chae ◽  
Hyo-In Lim ◽  
Yong-Yul Kim

The restoration of damaged or disrupted forests with genetically appropriate restoration planting material that can adapt to future environmental conditions will ensure the conservation of forest genetic resources. Abies koreana is endemic to the Republic of Korea, with declining populations under current environmental changes. In this study, we examined the genetic diversity of its largest population growing on Mt. Hallasan to determine the sampling size of planting material from the population that will ensure 95% coverage of alleles in the population. We evaluated the genetic diversity and spatial genetic structure of three subpopulations of A. koreana on Mt. Hallasan. A total of 456 samples were evaluated using 10 microsatellites. The observed heterozygosity and expected heterozygosity were 0.538 and 0.614 at the population level, respectively. The differences among the subpopulations accounted for 4% of the total variance. Intervals between individuals of the sample to be extracted were based on the two-target distance (5 and 10 m) inferred from the spatial genetic structure. Through random sampling methods considering the target distance, we showed that genetic diversity can be captured by obtaining at least 35 individuals in the population of A. koreana on Mt. Hallasan.


2012 ◽  
Vol 25 (4) ◽  
pp. 407-415 ◽  
Author(s):  
Jeong-Ho Song ◽  
Hyo-In Lim ◽  
Kyung-Nak Hong ◽  
Kyung-Hwan Jang ◽  
Yong-Pyo Hong

2014 ◽  
Vol 32 (1) ◽  
pp. 84-90
Author(s):  
Jeong-Ho Song ◽  
Hyo-In Lim ◽  
Kyeong-Hwan Jang ◽  
Kyung-Nak Hong ◽  
Jingyu Han

2015 ◽  
Vol 13 ◽  
pp. 17-30 ◽  
Author(s):  
Agnieszka Sutkowska ◽  
Kesara Anamthawat-Jónsson ◽  
Borgthór Magnússon ◽  
Wojciech Bąba ◽  
Józef R. Mitka

Prior to the present study there was limited knowledge about the genetic basis of plant colonization on the 50-year-old island of Surtsey, South Iceland. The aim here was to compare genetic structure of two contrasting species, Festuca rubra (arctic fescue) and Empetrum nigrum (crowberry), which have colonized Surtsey since 1973 and 1993, respectively. Inter-simple sequence repeat (ISSR) markers were used to assess genetic diversity and population structure. Two census periods were compared: 1996-1997 and 2005-2006. Using six ISSR primers, we obtained 103 and 139 discernible DNA fragments from F. rubra and E. nigrum respectively. Although the two species displayed similarly high genetic diversity indices (h = 0.238 and 0.235; I = 0.384 and 0.380, respectively), they differed significantly in their genetic profiles. Festuca was genetically structured at the subpopulation level (FST = 0.034, p = 0.007), whereas Empetrum showed a lack of genetic differentiation. A Bayesian STRUCTURE computation further revealed temporal and spatial genetic structure of the species. The early arrival grass F. rubra has expanded from a local genepool. The population was however initially established from different sources, forming a genetic melting pot on Surtsey. On the other hand, the late arrival shrub E. nigrum probably derived from a common source of immigrants.


2020 ◽  
Vol 68 (5) ◽  
pp. 384
Author(s):  
William Higgisson ◽  
Dianne Gleeson ◽  
Linda Broadhurst ◽  
Fiona Dyer

Gene flow is a key evolutionary driver of spatial genetic structure, reflecting demographic processes and dispersal mechanisms. Understanding how genetic structure is maintained across a landscape can assist in setting conservation objectives. In Australia, floodplains naturally experience highly variable flooding regimes that structure the vegetation communities. Flooding plays an important role, connecting communities on floodplains and enabling dispersal via hydrochory. Water resource development has changed the lateral-connectivity of floodplain-river systems. One possible consequence of these changes is reduced physical and subsequent genetic connections. This study aimed to identify and compare the population structure and dispersal patterns of tangled lignum (Duma florulenta) and river cooba (Acacia stenophylla) across a large inland floodplain using a landscape genetics approach. Both species are widespread throughout flood prone areas of arid and semiarid Australia. Tangled lignum occurs on floodplains while river cooba occurs along rivers. Leaves were collected from 144 tangled lignum plants across 10 sites and 84 river cooba plants across 6 sites, on the floodplain of the lower and mid Lachlan River, and the Murrumbidgee River, NSW. DNA was extracted and genotyped using DArTseq platforms (double digest RADseq). Genetic diversity was compared with floodplain-river connection frequency, and genetic distance (FST) was compared with river distance, geographic distance and floodplain-river connection frequency between sites. Genetic similarity increased with increasing floodplain-river connection frequency in tangled lignum but not in river cooba. In tangled lignum, sites that experience more frequent flooding had greater genetic diversity and were more genetically homogenous. There was also an isolation by distance effect where increasing geographic distance correlated with increasing genetic differentiation in tangled lignum, but not in river cooba. The distribution of river cooba along rivers facilitates regular dispersal of seeds via hydrochory regardless of river level, while the dispersal of seeds of tangled lignum between patches is dependent on flooding events. The genetic impact of water resource development may be greater for species which occur on floodplains compared with species along river channels.


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