scholarly journals DO CUTICLE CHARACTERS SUPPORT THE RECOGNITION OF ALSEO- DAPHNE, NOTHAPHOEBE & DEHAASIA AS DISTINCT GENERA?

REINWARDTIA ◽  
2014 ◽  
Vol 14 (1) ◽  
pp. 53 ◽  
Author(s):  
Sachiko Nishida ◽  
Henk Van der Werff
Keyword(s):  
Phylogenetic Analysis ◽  
Single Species ◽  
Single Genus ◽  
Genus One ◽  
Mixed Groups

NISHIDA, S. & VAN DER WERFF, H. Do cuticle characters support the recognition of Alseodaphne, Nothaphoebe and Dehaasia as distinct genera? Reinwardtia 14(1): 53 – 66. ? The Asian members of the Persea group are divided among the genera Alseodaphne, Apollonias, Dehaasia, Machilus, Nothaphoebe and Phoebe. A recent phylogenetic analysis has shown that Machilus and Phoebe are supported as monophyletic genera but evidence that the closely related genera Alseodaphne, Dehaasia and Nothaphoebe are monophyletic or not was equivocal. In this study we analyzed cuticle characters of 95 collections belonging to the Asian members except for Apollonias. We anticipated two possible outcomes. If the genera were not monophyletic, we expected that the groups based on cuticle characters would consist of species belonging to different genera. If the genera were monophyletic, we expected that the groups based on cuticle characters would consist of species belonging to the same genus. We found 16 groups based on cuticles. Of these, 12 consisted of species of a single genus (one group included a single species and thus a single genus).  The four mixed groups included mostly species of one genus with 1 or 2 species of a different genus. Our results support the recognition of Alseodaphne, Dehaasia, Machilus, Nothaphoebe and Phoebe as distinct genera.

A new taxonomic arrangement for Paleorhinus scurriensis

2012 ◽  
Vol 103 (3-4) ◽  
pp. 251-263 ◽  
Author(s):  
Michelle R. Stocker
Keyword(s):  
Phylogenetic Analysis ◽  
Single Species ◽  
Cranial Morphology ◽  
Late Triassic ◽  
Morphological Description ◽  
Diagnostic Features ◽  
Anatomical Features ◽  
Cladistic Analyses ◽  
Single Genus ◽  
Multiple Species

ABSTRACTThe paraphyletic genus ‘Paleorhinus’ is understood currently as a cosmopolitan phytosaur taxon from the Late Triassic. There is no consensus regarding the number of species of ‘Paleorhinus,’ with multiple species and genera synonymised into a single genus or even a single species at various points in its published history. The taxonomy is confounded by historical descriptions without the benefit of comparisons to more recently collected specimens, emphasis on plesiomorphic cranial morphology as diagnostic features of the genus, and lack of cladistic analyses. When included in a recent explicitly cladistic phylogenetic analysis, the holotype of ‘Paleorhinus’ scurriensis (TTU P-00539) was found to be the earliest-branching phytosaur with respect to other North American specimens previously referred to ‘Paleorhinus,’ and is generically distinct from Paleorhinus. ‘Paleorhinus’ scurriensis differs from all known phytosaurs in five unambiguous characters: basitubera widely separated mediolaterally; ridge present on lateral surface of jugal; thickened shelf present along posteroventral edge of expanded pterygoid-quadrate wing; ‘septomaxillae’ separated and excluded from internarial septum; and nasal swelling present posterior to posterior borders of nares. This detailed morphological description of an early-branching phytosaur taxon is a first step towards resolving long-standing issues surrounding specific anatomical features and relationships among early members of the clade.

A STUDY ON ICHTHYO-DIVERSITY OF MUNTJIBPUR POND OF ALLAHABAD (U.P.) INDIA

2017 ◽  
Vol 23 (1) ◽  
Author(s):  
ASHOK KUMAR VERMA
Keyword(s):  
Single Species ◽  
Single Genus ◽  
One Year

An attempt was made to find the ichthyo-diversity of Muntjibpur pond of Allahabad. Systematic surveys were conducted during a period of one year. A total of 13 species of fishes belonging to 12 genera, 8 families and 5 orders were identified. Siluriformes order is represented by 5 genera and 5 species while Cypriniformes order by 4 genera and 5 species. Each of the orders Clupeiformes, Osteoglossiformes and Ophiocephaliformes is represented by single genus and single species.

A REVISED GENERIC SYNOPSIS OF HYACINTHACEAE IN SUB-SAHARAN AFRICA, BASED ON MOLECULAR EVIDENCE, INCLUDING NEW COMBINATIONS AND THE NEW TRIBE PSEUDOPROSPEREAE

2003 ◽  
Vol 60 (3) ◽  
pp. 533-568 ◽  
Author(s):  
J. C. MANNING ◽  
P. GOLDBLATT ◽  
M. F. FAY
Keyword(s):  
Phylogenetic Analysis ◽  
Sub Saharan Africa ◽  
Molecular Evidence ◽  
New Combinations ◽  
Generic Level ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Single Genus ◽  
New Tribe ◽  
Sub Saharan

A revised generic synopsis of sub-Saharan Hyacinthaceae is presented, based on a molecular phylogenetic analysis of the family. Generic rank is accorded only to reciprocally monophyletic clades that can be distinguished by recognizable morphological discontinuities, thereby permitting an appropriate generic assignment of species not included in the analysis. Three subfamilies are recognized within the region. Subfamily Ornithogaloideae, characterized by flattened or angular seeds with tightly adhering testa, is considered to include the single genus Ornithogalum, which is expanded to include the genera Albuca, Dipcadi, Galtonia, Neopatersonia and Pseudogaltonia. Recognizing any of these segregates at generic level renders the genus Ornithogalum polyphyletic, while subdivision of Ornithogalum into smaller, morphologically distinguishable segregates in order to preserve the monophyly of each is not possible. Subfamily Urgineoideae, characterized by flattened or winged seeds with brittle, loosely adhering testa, comprises the two mainland African genera Bowiea and Drimia. The latter is well circumscribed by its deciduous, short-lived perianth and includes the previously recognized genera Litanthus, Rhadamanthus, Schizobasis and Tenicroa. The monotypic Madagascan Igidia is provisionally included in the subfamily as a third genus on the basis of its seeds, pending molecular confirmation of its relationships. Subfamily Hyacinthoideae resolves into three clades, distinguished as tribes Hyacintheae (strictly northern hemisphere and not treated further), Massonieae and Pseudoprospereae tribus nov. Full descriptions and a key to their identification are provided for all genera. New combinations reflecting the generic circumscriptions adopted here are made for most African and all Indian and Madagascan species.

scholarly journals Spiribacter aquaticus Leon et al. 2017 is a later heterotypic synonym of Spiribacter roseus Leon et al. 2016. Reclassification of Halopeptonella vilamensis Menes et al. 2016 as Spiribacter vilamensis comb. nov.

2020 ◽  
Vol 70 (4) ◽  
pp. 2873-2878 ◽  
Author(s):  
María José León ◽  
Cristina Galisteo ◽  
Antonio Ventosa ◽  
Cristina Sánchez-Porro
Keyword(s):  
Type Species ◽  
Single Species ◽  
Amino Acid Identity ◽  
The Other ◽  
Phylogenomic Analysis ◽  
Content Type ◽  
Link Type ◽  
Average Amino Acid Identity ◽  
Single Genus ◽  
Type Strains

A comparative taxonomic study of Spiribacter and Halopeptonella species was carried out using a phylogenomic approach based on comparison of the core genome, orthologous average nucleotide identity (OrthoANIu), Genome-to-Genome Distance Calculator (GGDC) and average amino acid identity (AAI). Phylogenomic analysis based on 976 core translated gene sequences obtained from their genomes showed that Spiribacter aquaticus SP30T, S. curvatus UAH-SP71T, S. roseus SSL50T, S. salinus M19-40T and Halopeptonella vilamensis DSM 21056T formed a robust cluster, clearly separated from the remaining species of closely related taxa. AAI between H. vilamensis DSM 21056T and the species of the genus Spiribacter was ≥73.1 %, confirming that all these species belong to the same single genus. On the other hand, S. roseus SSL50T and S. aquaticus SP30T showed percentages of OrthoANIu and digital DNA–DNA hybridization of 98.4 % and 85.3 %, respectively, while these values among those strains and the type strains of the other species of Spiribacter and H. vilamensis DSM 21056T were ≤80.8 and 67.8 %, respectively. Overall, these data show that S. roseus SSL50T and S. aquaticus SP30T constitute a single species and thus that S. aquaticus SP30T should be considered as a later, heterotypic synonym of S. roseus SSL50T based on the rules for priority of names. We propose an emended description of S. roseus , including the features of S. aquaticus . We also propose the reclassification of H. vilamensis as Spiribacter vilamensis comb. nov.

scholarly journals A51 Genetic variability of small ruminant lentiviruses in sheep and goats from single-species flocks from Poland

2019 ◽  
Vol 5 (Supplement_1) ◽  
Author(s):  
Monika Olech ◽  
Jacek Kuźmak
Keyword(s):  
Phylogenetic Analysis ◽  
Genetic Variability ◽  
Phylogenetic Trees ◽  
Small Ruminant ◽  
Phylogenetic Analyses ◽  
Single Species ◽  
Genetic Distances ◽  
Sheep And Goats ◽  
Viral Recombination ◽  
Species Flocks

Abstract Previous phylogenetic analyses of small ruminant lentivirus (SRLV) sequences found in Poland revealed the circulation of subtype A1 in both sheep and goats, subtypes B1 in goats, and subtypes B2, A12, and A13 in sheep only. This study aimed to analyze the genetic nature of SRLV circulating in sheep and goats from single-species flocks. In order to analyze the degree of genetic variability, the fragments of gag and env genes of 24 SRLV strains were amplified by PCR, cloned into plasmid vectors, sequenced, and consensus sequences were aligned to each other and to reference sequences available from GenBank. Phylogenetic analysis was performed using the Geneious tree-builder tool, and phylogenetic trees were constructed using Mr Bayes (using the general time reversible substitution model) within Geneious Pro 5.3. Pairwise genetic distances were calculated in MEGA 6. Phylogenetic analysis revealed that the strains were highly heterogeneous and represented ovine strains belonging to subtypes A12 and B2 and caprine strains grouped in subtypes B1, B2, A1, and A12. In addition, two novel subtypes, A16 and A17, were found in goats. The mean pairwise genetic distances of gag and env sequences of both clusters were above 15 per cent nucleotide divergence when compared to all other subtypes within group A, which is a criterion required to distinguish a new subtype. Additionally, the existence of two separated clusters was confirmed by high bootstrap values. Co-infections with strains belonging to different subtypes within A and B groups were detected in one sheep and four goats originating from four flocks. Since the co-infection with more than one lentivirus genotype offers an opportunity for viral recombination, the possible recombination events were tested based on RDP analysis. For all co-infected animals, no evidence of recombination was found within the gag gene; however, env sequences showed some recombination patterns in three samples. In conclusion, we have demonstrated extended genetic variability of SRLV in sheep and goats from Poland with the existence of co-infection and recombination events.

Phylogenetic analysis of the genera of endemic Hawaiian sap beetles (Coleoptera: Nitidulidae) based on morphology with redescription and key to the genera of endemic Hawaiian Nitidulidae

Zootaxa ◽  
2007 ◽  
Vol 1427 (1) ◽  
pp. 1-36 ◽  
Author(s):  
CURTIS EWING
Keyword(s):  
Phylogenetic Analysis ◽  
Single Species ◽  
Morphological Characters ◽  
External Morphology ◽  
Direct Connection ◽  
Undescribed Species ◽  
Additional Species ◽  
Incertae Sedis ◽  
Sap Beetles ◽  
Endemic Genera

The endemic Hawaiian sap beetles were originally placed in 13 genera in 1908; Apetasimus, Apetinus, Cillaeopeplus, Cyrtostolus, Eunitidula, Eupetinus, Gonioryctus, Goniothorax, Nesapterus, Nesopeplus, Nesopetinus, Notopeplus, and Orthostolus. Apetasimus, Cyrtostolus, Eunitidula, and Notopeplus were described for single species, with additional species later described for Apetasimus and three undescribed species known for Eunitidula from Oahu, Molokai, and West Maui. Nesopeplus and Nesopetinus have been previously shown to be junior synonyms of Prosopeus. The monophyly of the genera is tested using morphological characters, primarily of the male copulatory sac, in a parsimony framework. The results provide the rationale for reducing the number of endemic genera to six; Apetasimus (= Cyrtostolus + Orthostolus in part), Cillaeopeplus (= Notopeplus), Eupetinus (= Apetinus), Gonioryctus (= Eunitidula + Goniothorax + Nesapterus), Orthostolus s.s., and Prosopeus. Brachypeplus (= Cillaeopeplus) gracilis, a species endemic to Guam, was placed in the formerly Hawaiian endemic Cillaeopeplus in 1962. Examination of the types of all species of Cillaeopeplus shows no direct connection between B. gracilis and the Hawaiian taxa comprising the remainder of Cillaeopeplus. Brachypeplus gracilis is placed incertae sedis in Brachypeplus herein. The position of the endemic Hawaiian sap beetles within the nit idulid subfamily Cillaeinae is surveyed using exemplar species from 22 of 27 genera placed in Cillaeinae. Undescribed species from eastern Polynesia allied with Brachypeplus subgenus Selis are proposed as the closest relatives of the Hawaiian endemic sap beetles based on internal and external morphology.

Allonautilus: a new genus of living nautiloid cephalopod and its bearing on phylogeny of the Nautilida

1997 ◽  
Vol 71 (6) ◽  
pp. 1054-1064 ◽  
Author(s):  
Peter D. Ward ◽  
W. Bruce Saunders
Keyword(s):  
Phylogenetic Analysis ◽  
Reproductive System ◽  
New Genus ◽  
Male Reproductive System ◽  
Late Cenozoic ◽  
Extant Species ◽  
Single Genus ◽  
Gill Morphology ◽  
First Time

Living ectocochliate cephalopods have long been thought to be restricted to a single genus, Nautilus Linnaeus, 1758, comprising five or six extant species. The shells of two species, N. scrobiculatus Lightfoot, 1786, and N. perforatus Conrad, 1847, are quite distinct, but no soft-parts were known until 1984, when N. scrobiculatus was seen alive for the first time. Dissections show that significant anatomical differences exist between N. scrobiculatus and other Nautilus species, including differences in gill morphology and details of the male reproductive system. These differences, along with phylogenetic analysis of extant and selected fossil nautiloid species, indicate that N. scrobiculatus, and N. perforatus should be distinguished from Nautilus as a newly defined genus, Allonautilus. This analysis contradicts previous phylogenies proposed for the Nautilida, which placed Nautilus as the last-evolved member of the order. We surmise that Allonautilus is a descendent of Nautilus, that the latter is paraphyletic, and first evolved in the Mesozoic, rather than in the late Cenozoic, as has been previously suggested.

Phylogeny, taxonomy and biology of mites of the genera Chelacheles and Neochelacheles (Acari : Cheyletidae)

2004 ◽  
Vol 18 (5) ◽  
pp. 547 ◽  
Author(s):  
Andre V. Bochkov ◽  
Barry M. OConnor
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
North America ◽  
Taxonomic Revision ◽  
Single Species ◽  
Model Species ◽  
Species Groups

Taxonomic revision and parsimony-based phylogenetic analysis of species in two closely related genera of predaceous Cheyletidae, Chelacheles Baker and Neochelacheles Smiley & Williams, are conducted. Among species of these genera, C. algericus Fain & Bochkov, syn. nov. and C. humilis Rasool, Chaudhri & Akbar, syn. nov. are synonymised with C. strabismus Baker and C. bakeri Attiah, respectively. Six new species are described: C.�aigamuxa, sp. nov.; C. klimovi, sp. nov.; C. seminole, sp. nov.; C. temoak, sp. nov.; N. corpuzrarosae, sp. nov.; and N. mendicus, sp. nov. The genus Chelacheles includes two species-groups, strabismus (seven species) and peritremaculatus (seven species), and two ungrouped species, C. michalskii Samsinak and C. stigmaeoides Barilo. The genus Neochelacheles (three species) is represented by a single species from North America and by two Philippine endemics. New diagnoses of the genera are given as well as descriptions of postembryonic stages of a model species in each genus, a key, and redescriptions for most species. The biology of these mites is briefly discussed. Phylogenetic analysis indicates that the associations of some species with polypore bracket fungi have arisen independently in the genera Chelacheles and Neochelacheles.

Taxonomic Revision of Passiflora Subgenus Tetrapathea Including the Monotypic Genera Hollrungia and Tetrapathea (Passifloraceae), and a New Species of Passiflora

2009 ◽  
Vol 34 (2) ◽  
pp. 375-385 ◽  
Author(s):  
Shawn E. Krosnick ◽  
Andrew J. Ford ◽  
John V. Freudenstein
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Taxonomic Revision ◽  
Single Species ◽  
World Species ◽  
Old World ◽  
A New Species

Recent phylogenetic analysis of the Old World species of Passiflora has indicated that two monotypic genera in the Passifloraceae, Hollrungia and Tetrapathea, are strongly supported as belonging to the genus Passiflora. Additionally, a new species from Australia was found to belong to the same clade as Hollrungia and Tetrapathea. Consequently, a taxonomic revision is presented here of Passiflora subgenus Tetrapathea including these three taxa. Tetrapathea tetrandra, the type of Passiflora subgenus Tetrapathea and historically recognized as both T. tetrandra and P. tetrandra, is formally accepted here as P. tetrandra. The single species of Hollrungia, H. aurantioides, is transferred to Passiflora subgenus Tetrapathea as P. aurantioides. The new and so far unnamed species in Passiflora subgenus Tetrapathea from Australia is also described as P. kuranda sp. nov.

scholarly journals Mixed haemosporidian infections are associated with higher fearfulness in Yellow Wagtail (Motacilla flava)

2017 ◽  
Vol 95 (6) ◽  
pp. 405-410 ◽  
Author(s):  
M.P. Marinov ◽  
C. Marchetti ◽  
D. Dimitrov ◽  
M. Ilieva ◽  
P. Zehtindjiev
Keyword(s):  
Mixed Infection ◽  
Parasite Species ◽  
Single Species ◽  
Blood Parasite ◽  
Activity Level ◽  
Single Infection ◽  
Novel Object ◽  
Yellow Wagtail ◽  
Parasite Infections ◽  
Single Genus

Blood parasite infections have been shown to influence behavioural traits of their avian hosts, in particular activity level and boldness. Following the hypothesis that a mixed infection by different parasite species should have higher effects than single-species infections, we analysed activity and boldness in wild-caught Yellow Wagtails (Motacilla flava L., 1758), a trans-Saharan migrant, during the energetically demanding spring migration. Eighty-five percent of the birds were naturally infected with Haemoproteus Kruse, 1890 or Plasmodium Marchiafava and Celli, 1885 (Sporozoa, Haemosporida) and 27% of individuals had parasites from both genera. No differences in activity were found among uninfected, single infection, and mixed infection groups. Birds with infections from both genera appeared to be more fearful when first introduced to a cage. These birds also tended to be less likely to approach a novel object compared with uninfected birds and birds infected by a single genus only.

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