Allelic dropout in PAH affecting the results of genetic diagnosis in phenylketonuria

Author(s):  
Lin Wang ◽  
Bin He ◽  
Qiujie Jin ◽  
Ruimiao Bai ◽  
Wenwen Yu ◽  
...  

Abstract Objectives Phenylketonuria (PKU) is an inherited autosomal recessive disorder of phenylalanine metabolism. It is mainly caused by a deficiency in phenylalanine hydroxylase (PAH) and frequently diagnosed with Sanger sequencing. To some extent, allelic dropout can explain the inconsistency in genotype and phenotype. Methods Three families were evaluated through DNA sequence analysis, multiplex ligation-dependent probe amplification (MLPA) and prenatal diagnosis technologies. The possibility of inconsistency in phenotype and genotype with c.331C>T variant was analysed. Results Through pedigree analysis, three mothers carried a homozygous c.331C>T variant, which was a false-positive result. New primers were used, and this error was caused by allelic dropout. In this case, c.158G>A was likely a benign variant. Conclusions Sequence variants in primer-binding regions could cause allelic dropout, creating unpredictable errors in genotyping. Our results emphasised the need for careful measures to treat genotype–phenotype inconsistencies.

Author(s):  
Radha Rama Devi Akella

Abstract Objective To evaluate the cause of short stature in children. Case presentation Two children with suspected skeletal dysplasia and short stature were evaluated. Conclusions The 3-M syndrome is a primordial growth disorder manifesting severe postnatal growth restriction, skeletal anomalies and prominent fleshy heels. The 3-M syndrome is a genetically heterogeneous disorder and the phenotype is similar. This is a rare autosomal recessive disorder with normal intellect. Two affected children have been identified by whole-exome sequencing. One patient harboured a compound heterozygous variant and the other was a homozygous missense variant. The genetic diagnosis helped in counselling the families and facilitated prenatal diagnosis in one (case 1) family.


Blood ◽  
2011 ◽  
Vol 118 (21) ◽  
pp. 4927-4927
Author(s):  
Hongxing Liu ◽  
Fang Wang ◽  
Juan Zhu ◽  
Hui Wang ◽  
Ping Wu ◽  
...  

Abstract Abstract 4927 Familial hemophagocytic lymphohistiocytosis (FHL) is a rare autosomal recessive disorder characterized by massive infiltration of several organs by activated lymphocytes and macrophages. Four causative genes have been identified for this autosomal recessive disorder (PRF1, UNC13D, STX11 and STXBP2). Till now, gene mutations carried by FHL cases reported in literature were all identified to be inherited when pedigree analysis was performed. But the mutation types of these genes were diversified, when and how these different kinds of mutations occurred is yet to know. Here we report the first de novo UNC13D L1000P mutation identified in a FHL patient. The patient was a 6 years old boy with fever (39-40.2°C), pancytopenia and hepatosplenomegaly. Blood test showed hemoglobin of 6.0g/dL, platelet count of 48×109/L, and white blood cell count of 0.96×109/L. ALT 91U/L, AST 68 IU/L, LDH 419IU/L, TP 67g/L, ALB 36g/L, Fibrinogen 2.03g/L, Serum ferrites 704ug/L. Ultrasound examination showed hepatosplenomegaly. Bone marrow morphological examination showed hemophagocytic phenomenon. Immunophenotyping of peripheral blood showed 68% of lymphocytes, no abnormal clonal cells were identified, the proportion of NK cells and perforin protein expression is normal. Herpes virus (HHV) type 1 to 8 screening showed EBV and HHV7 positive. Gene mutation screening for PRF1, UNC13D, STX11, STXBP2, SH2D1A and XIAP showed two UNC13D heterozygous mutations of c.1845_1847dupTGA/p.D615dup and c.2999T>C/p.L1000P, both mutations had never been reported in literature. The patient was diagnosed as FHL3 and got a remission by plasma exchange, antivirus, etoposide and dexamethasone treatment. And then he was performed allogeneic hematopoietic stem cell transplantation and soon got a complete implantation. When pedigree analysis was performed, only the D615dup mutation was inherited from his mother, the L1000P mutation was not seen in either his parents. The genetic relationship between the patient and his parents was confirmed by 15 STR polymorphism analysis using AB Identifilier Kit, and then the hereditary relationship of UNC13D gene was further confirmed by analysis of common polymorphism site within the UNC13D gene. Further pedigree analysis confirmed that the D615dup was inherited from the maternal lineage, but none of his paternal lineage member (including his father and grandparents) carrying L1000P mutation. The oral mucosa, nail, hair follicle and semen samples from the patient's father were all identified to be negative for L1000P mutation, but the oral mucosa, nail and hair follicle samples from the patient were all identified to be carrying the heterozygous L1000P mutation. The cDNA fragment including both D615dup and L1000P mutations from the patient was amplified by PCR and clone sequenced. By cloning and sequencing, we identified that the two mutations were separately located on different UNC13D alleles. Through comprehensive analysis of the results showed above, we deemed that the UNC13D L1000P mutation carrying by the patient is a de novo mutation, it most likely occurred during the process of male gamete formation from his father. It is known that there will be accidental event of de novo mutations during the process of gamete formation, and they are material basis of evolution and genetic disease. Due to the rarity of the incident, de novo mutation is hard to be observed in common Mendelian diseases and only have been reported in some very rare disease such as Proteus Syndrome. We are now reported the first observation of a de novo mutation in FHL patient, and we believe that the de novo UNC13D L1000P mutation and the hereditary UNC13D D615dup mutation each lead to defect of one UNC13D allele, and thus contribute to the genetic pathogenesis of the patient. We also believe this is evidence that the de novo mutation of UNC13D gene is a randomly and constantly accidental event in the general crowd. Disclosures: No relevant conflicts of interest to declare.


Author(s):  
Rabih Andary ◽  
Abdul-Karim El-Hage-Sleiman ◽  
Theresa Farhat ◽  
Sami Sanjad ◽  
Georges Nemer

Abstract:Background:Hereditary vitamin D-resistant rickets (HVDRR) is an autosomal recessive disorder caused by mutations in the vitamin D receptor (Methods:We examined four patients with HVDRR from three unrelated Lebanese families. All parents were consanguineous with normal phenotype. We used Sanger sequencing to identify mutations in the coding exons ofResults:Two homozygous mutations (p.R391S and p.H397P), both in exon 9 of theConclusions:This is the first report of


Medicina ◽  
2021 ◽  
Vol 57 (3) ◽  
pp. 272
Author(s):  
Gina Nam ◽  
Angela Cho ◽  
Mi-hye Park

Background: Antenatal Bartter syndrome is an autosomal recessive disorder causing severe polyuria that leads to severe polyhydramnios and preterm labor. Prenatal diagnosis of antenatal Bartter syndrome is difficult because the genetic diagnosis can only be confirmed following a clinical diagnosis in infants. Reports of prenatal diagnosis and treatment of antenatal Bartter syndrome are limited. Case Presentation: We present the case of a 33-year-old pregnant woman with refractory polyhydramnios at 31 weeks of gestation. There were no structural anomalies or placental problems on ultrasonography; therefore, antenatal Bartter syndrome was suspected. With repeated amniocentesis and indomethacin therapy, the pregnancy continued to 36 weeks of gestation. The clinical features of the infant and subsequent genetic testing confirmed the diagnosis of antenatal Bartter syndrome. The baby was in good clinical condition at the 3-month follow-up visit. Conclusions: For pregnant women with early onset and refractory severe polyhydramnios without morphological anomalies, antenatal Bartter syndrome should be highly suspected.


Author(s):  
Zhilei Zhang ◽  
DingYuan Ma ◽  
Xin Wang ◽  
YanYun Wang ◽  
YaHong Li ◽  
...  

Phenylalanine hydroxylase (PAH) deficiency (PAHD) is an autosomal recessive disorder that causes severe injury to the nervous system which mainly depends on dietary therapy. The limited treatment options for PAHD...


2021 ◽  
pp. 1-11
Author(s):  
Farooq Ahmad ◽  
Ishtiaq Ahmed ◽  
Qamre Alam ◽  
Tanveer Ahmad ◽  
Ammara Khan ◽  
...  

The term autosomal recessive congenital ichthyosis (ARCI) is the subgroup of ichthyosis, which describes a highly heterogeneous group of genetic disorders of the skin characterized by cornification and defective keratinocytes differentiation associated with mutations in at least 14 genes including <i>PNPLA1</i>. To study the molecular basis of the Pakistani kindreds (A and B) affected by ARCI, whole-exome sequencing (WES) in the DNA samples of affected members was performed followed by Sanger sequencing of the candidate gene to hunt down the disease-causing sequence variant/s. WES data analysis led to the identification of a novel nonsense sequence variant (c.892C&#x3e;T; p.Arg298*, family A) and a recurrent missense variant (c.102C&#x3e;A; p.Asp34Glu, family B) in <i>PNPLA1</i> mapped to the ARCI locus in chromosome 6p21.31. Validation and cosegregation analysis of the variants in the remaining family members of the respective families were confirmed by Sanger sequencing. The current investigation expands the spectrum of <i>PNPLA1</i> mutations and helps establish the proper clinico-genetic diagnosis and correct genotype-phenotype correlation.


Author(s):  
Sailatha Ramanujam ◽  
Shery Angel ◽  
Anuradha Coimbatore Ramachandran ◽  
Anu Bhargavi Basker

Isovaleric acidemia is an inborn error of metabolism, inherited as an autosomal recessive disorder, caused by deficiency of isovaleryl- Coenzyme A (CoA) dehydrogenase, leading to elevated plasma isovaleric acid and urine isovalerylglycine levels. Isovaleric acidemia is an unusual disorder with an incidence of 1:67,000 in India. Parents of the child are assumed to be carriers and the offsprings have a one in four (25%) chance of inheriting the disorder. The present article reports a 33-year-old, Gravida 3 Para 2 Live 0 (G3P2L0) at 38 week + 1 day, with previous two Lower Segment Caesarean Surgery (LSCS) and two neonatal deaths, who delivered a term boy baby with incidental finding of isovaleric acidemia at birth. Isovaleric acidemia could sometimes be a rare case for bad obstetric history and should be considered while evaluating a patient. Also, it is now possible to diagnose the condition by early prenatal tests and even before pregnancy by Preimplantation Genetic Diagnosis (PIGD) and by taking necessary steps.


Author(s):  
Xiaohua Jin ◽  
Yousheng Yan ◽  
Chuan Zhang ◽  
Ya Tai ◽  
Lisha An ◽  
...  

Phenylketonuria (PKU) is caused by phenylalanine hydroxylase (PAH) gene variants. Previously, 94.21% of variants were identified using Sanger sequencing and multiplex ligation-dependent probe amplification. To investigate the remaining variants, whole-genome sequencing (WGS) was performed in four patients with PKU with unknown genotype to identify deep intronic or structural variants. Three novel heterozygous variants (c.706+368T>C; c.1065+241C>A; and c.1199+502A>T) were identified in a deep PAH gene intron. The c.1199+502A>T variant was detected in 60% (6/10) PKU patients. In silico prediction showed that the three deep variants may impact splice site selection and result in inclusion of a pseudo-exon. The c.1199+502A>T PAH minigene and reverse transcription PCR of blood RNA in a patient with PKU and compound heterozygous variants (c.1199+502A>T/ c.1199G>A) confirmed that the c.1199+502A>T variant creates a novel branch point and leads to the inclusion of a 25 bp in PAH mRNA (r.1199_2000ins1199+538_1199+562). Furthermore, the c.1199G>A mutation leads to the retention of an additional 17 nt in the PAH mRNA transcript (r.1199_2000ins1199+1_1199+17). These results expand the PAH genotypic spectrum and highlight that deep intronic analysis of PAH can improve genetic diagnosis in undiagnostic patients.


Author(s):  
Nguyen Thi Thanh Nga ◽  
Tran Van Khoa ◽  
Nguyen Thi Hong Van ◽  
Ngo Truong Giang

Spinal muscular atrophy (SMA) is a severe neurodegenerative autosomal recessive disorder. Most of patients are caused by the homozygous absence of exon 7 of the telomeric copy of the SMN gene (SMNt) on chromosome. Children with SMA often died prematurely at school age. Therefore, the aim of the study was to improve protocol for spinal muscular atrophy preimplantation genetic diagnosis by using the minisequencing technique. The study was conducted on 30 embryonic cell templates byopsied plus embryos, and four couples were treated using this method. Five unaffected embryos were transferred which resulted in two clinical pregnancy. We have successfully applied the technique of minisequencing for the Preimplantation Genetic Diagnosis of spinal muscular atrophy.    


2000 ◽  
Vol 47 (2) ◽  
pp. 365-369 ◽  
Author(s):  
C Zekanowsk ◽  
B Perez ◽  
L R Desviat ◽  
W Wiszniewski ◽  
M Ugarte

Phenylketonuria (PKU), an autosomal recessive disorder caused be a deficiency of hepatic phenylalanine hydroxylase (PAH), is clinically very heterogeneous. At the molecular level, more than 400 mutations in the PAH gene are known to date, which in different genotype combinations could account for biochemical and clinical variability of symptoms. In vitro expression studies on R68G and R68S mutations causing mild phenylketonuria are presented.


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