Genetic structure analysis of sorghum parent lines based on SSR markers

2013 ◽  
Vol 41 (3) ◽  
pp. 359-365 ◽  
Author(s):  
L. Wang ◽  
S. Jiao ◽  
Y. Jiang ◽  
H. Yan ◽  
D. Su ◽  
...  
Animals ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 1429
Author(s):  
Yang Teng ◽  
Jing Yang ◽  
Guofen Zhu ◽  
Fuli Gao ◽  
Yingying Han ◽  
...  

Detailed molecular genetic research on amphibian populations has a significant role in understanding the genetic adaptability to local environments. The oriental fire-bellied toads (Bombina orientalis) were artificially introduced to Beijing from Shandong Province in 1927, and since then, this separated population went through an independent evolution. To explore the differentiation of the introduced population with its original population, this study analyzed the genetic structure of the oriental fire-bellied toad, based on the mitochondrial genome control region and six microsatellite sites. The results showed that the haplotype diversity and nucleotide diversity of the mitochondrial D-loop region partial sequences of the Beijing Botanical Garden population and the Baiwangshan population were lower than those of the Shangdong Kunyushan population. Microsatellite marker analysis also showed that the observed heterozygosity and expected heterozygosity of the Beijing populations were lower than those of the Kunyushan population. The phylogenetic trees and network diagrams of haplotypes indicated that the three populations were not genetically separated. However, the structure analysis showed a genetic differentiation and categorized the sampling individuals into Beijing and Shandong genetic clusters, which indicated a tendency for isolated evolution in the Beijing population. Although the Beijing populations showed a decline in genetic diversity, it was still at a moderate level, which could maintain the survival of the population. Thus, there is no need to reintroduce new individuals from the Kunyushan source population.


Human Biology ◽  
2006 ◽  
Vol 78 (5) ◽  
pp. 551-563 ◽  
Author(s):  
Rebeca. Campos-Sánchez ◽  
Ramiro. Barrantes ◽  
Sandra Honorato da. Silva ◽  
Michael. Escamilla ◽  
Alfonso. Ontiveros ◽  
...  

2018 ◽  
Vol 14 (6) ◽  
Author(s):  
Yang Hu ◽  
Lu Tian ◽  
Jingwei Shi ◽  
Jieyun Tian ◽  
Lili Zhao ◽  
...  

2014 ◽  
Vol 178 ◽  
pp. 175-183 ◽  
Author(s):  
Zahra Noormohammadi ◽  
Isabel Trujillo ◽  
Angjelina Belaj ◽  
Saeede Ataei ◽  
Mehdi Hosseini-Mazinan

2021 ◽  
Author(s):  
Varun Hiremath ◽  
Kanwar Pal Singh ◽  
Neelu Jain ◽  
Kishan Swaroop ◽  
Pradeep Kumar Jain ◽  
...  

Abstract Genetic diversity and structure analysis using molecular markers is necessary for efficient utilization and sustainable management of gladiolus germplasm. Genetic analysis of gladiolus germplasm using SSR markers is largely missing due to scarce genomic information. In the present investigation, we report 66.66% cross transferability of Gladiolus palustris SSRs whereas 48% of Iris EST-SSRs were cross transferable across the gladiolus genotypes used in the study. A total of 17 highly polymorphic SSRs revealed a total 58 polymorphic loci ranging from two to six in each locus with an average of 3.41 alleles per marker. PIC values ranged from 0.11 to 0.71 with an average value of 0.48. Four SSRs were selectively neutral based on Ewens-Watterson test. Analysis of genetic structure of 84 gladiolus genotypes divided whole germplasm into two subpopulations. 35 genotypes were assigned to subpopulation 1 whereas 37 to subpopulation 2 and rest of the genotypes recorded as admixture. Analysis of molecular variance indicated maximum variance (53.59%) among individuals within subpopulations whereas 36.55% of variation observed among individuals within total population. Least variation (9.86%) was noticed between two subpopulations. Moderate (FST = 0.10) genetic differentiation of two subpopulations was observed. Grouping pattern of population structure was consistent with UPGMA dendrogram based on simple matching dissimilarity coefficient (ranged from 01.6 to 0.89) and PCoA. Genetic relationships assessed among the genotypes of respective clusters assist the breeders in selecting desirable parents for crossing. SSR markers from present study can be utilized for cultivar identification, conservation and sustainable utilization of gladiolus genotypes for crop improvement.


2018 ◽  
Vol 10 (26) ◽  
pp. 65-75
Author(s):  
Hassan Zali ◽  
Omid Sofalian ◽  
Mehrshad Zeinalabedini ◽  
Tahereh hasanloo ◽  
Ali asgharii ◽  
...  

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