Simulations of Defect and Diffusion Properties in The Interstitial CU-C Solid Solutions

1998 ◽  
Vol 527 ◽  
Author(s):  
D.E. Ellis ◽  
K.C. Mundim ◽  
D. Fuks ◽  
S. Dorfman ◽  
A. Berner

ABSTRACTHRSEM analyses of copper/graphite interfaces are presented, showing a narrow solid solution zone. Atomistic simulations in the framework of the Generalized Simulated Annealing approach lead to very reasonable relaxed geometries around carbon interstitials and vacancy complexes of a Cu host, and for a Cu/graphite interface. Embedded Cluster Density Functional results indicate a charge transfer of ~1 e to carbon, mostly from the first neighbor shell, in all relaxed environments studied.

2012 ◽  
Vol 11 (03) ◽  
pp. 505-525 ◽  
Author(s):  
YUHUA ZHOU ◽  
KAI TAN ◽  
XIN LU

We have performed a systematic density functional study on the ground-state electronic structure and excited states of a representative D-σ-A dyad, i.e. EDT-TTF-Im-F4TCNQ π-radical, in vacuo and in different conventional solvents (toluene, THF, DMF and DMSO) by using some popular hybrid density functionals (B3LYP, M05, M05-2X, PBE0 and BMK). It has been shown that the M05 and B3LYP functionals perform the best in predicting the intramolecular charge-transfer (ICT) pertaining to both the ground state and excited states of the dyad. The amphoteric dyad is liable to solvent-promoted ICT from its EDT-TTF-Im donor (D) to F4TCNQ acceptor (A), adopting a charge-unseparated ground state D-A• in vacuo, a partially zwitterionic ground state [D-A]• in nonpolar toluene solvent, and a fully zwitterionic ground state D•+-A- in such polar solvents as THF, DMF and DMSO. Owing to its solvent-dependent chameleon ground state, excited states of the dyad in solvents also exhibit remarkable dependence on solvent polarity, as revealed by TDDFT calculations. Furthermore, cluster model calculations revealed that intermolecular charge-transfer readily occurs between the dyads, accounting for the observed zwitterionic charge state in solid state and solid-state semiconductivity.


2019 ◽  
Vol 26 (04) ◽  
pp. 1850170 ◽  
Author(s):  
AMIRALI ABBASI ◽  
JABER JAHANBIN SARDROODI

The gas response of metal oxide-based sensors depends strongly on its adsorption properties. To explore the potential sensing capability of pristine and nitrogen modified TiO2/graphene oxide (GO) heterostructures, the adsorption of NO2 molecule on the N-doped nanocomposites was investigated using density functional theory (DFT) calculations. Six possible configurations were simulated based on the estimated adsorption energies. The binding sites were located over the oxygen, doped nitrogen and five-fold coordinated titanium atoms of TiO2. The electronic properties including atomic Mulliken population, projected density of states and molecular orbitals were investigated in detail. The N–O bonds of the NO2 molecule were significantly increased after the adsorption process. The adsorption of NO2 molecule on the N-doped nanocomposite is more energetically favorable than the adsorption on the undoped one. The results suggest that NO2 chemisorbs on the considered nanocomposites. Mulliken population analysis reveals a noticeable charge transfer from the nanocomposite to the molecule, which indicate that NO2 acts as a charge acceptor. Molecular orbital calculations show that the highest occupied molecular orbitals (HOMOs) of the studied systems were mainly localized on the adsorbed NO2 molecule. The significant overlaps in the projected density of states (PDOS) spectra of the interacting atoms confirm the formation of chemical bonds between them. There is a direct relationship between the results of charge transfer and sensing responses. N-doped nanocomposites have better sensing response than the undoped ones. The results highlight the possibility to develop innovative highly efficient NO2 sensors based on novel TiO2/GO nanocomposites.


Author(s):  
Hari P. Paudel ◽  
Wei Shi ◽  
David Hopkinson ◽  
Janice A. Steckel ◽  
Yuhua Duan

Understanding of zeolitic imidazolate framework-8 (ZIF-8) interaction with different gas molecules is crucial when ZIF-8 is used in gas separation.


2018 ◽  
Vol 20 (15) ◽  
pp. 10048-10059 ◽  
Author(s):  
Dong-Hyuk Jung ◽  
Ji-Hwan Lee ◽  
Mehmet Emin Kilic ◽  
Aloysius Soon

The structural, vibrational, and diffusion properties of different ceria-based systems (including oxygen vacancies and rare-earth dopants (Sm or Gd)) have been examined using both first-principles density-functional theory calculations and finite-temperature molecular dynamics simulations.


2016 ◽  
Vol 8 ◽  
pp. 1-30 ◽  
Author(s):  
Bi Cheng Zhou ◽  
Zi Kui Liu

In this chapter, the modeling techniques of the thermodynamic and diffusion properties based on density functional theory in ionic materials, specifically oxide ceramic materials or ionic conductor materials are reviewed. Section 1 is the introduction of this book chapter. Section 2 is devoted to introduce the modeling methods of first-principles finite temperature thermodynamics, including quasi-harmonic phonon calculations and the Debye model. In the phonon model, the frozen phonon method, the linear response method, and the newly developed mixed-space method to model ionic polar materials are discussed. Section 3 introduces the general atomic diffusion theory, first-principles transition state calculations (double-well approach), and ab initio molecular dynamics simulations of the diffusion coefficients in ionic materials. Section 4 discusses some of the recent works of first-principles prediction of the thermodynamic and diffusion properties of ionic materials from our group and in the literature, with a focus on oxides for energy applications. Section 5 summarizes this book chapter.


Background: In their Nature's seminal work (Nature. 1953;171:737), J.D. Watson and F.H.C. Crick noted that the structure of DNA admits a so-called tautomeric model of spontaneous point mutations. This work reported at the conference "Nanobiophysics-2019" (Kiev) as a plenary report, is actually an attempt to answer the following questions: (i) "Yes, the tautomerism of the bases is a very attractive model, but how important is it in mutagenesis?" by Morgan (Morgan AR. Trends Biochem. Sci. 1993;18:160–163); (ii) What reality does the rare tautomeric mutation model describe? The structure [А×Т]WC was selected in the work. Developing the previously proposed mutation model×of the Watson-Crick pair [А×Т]WC due to the shift of the bases in the pair relative to each other and the interconnection hydrogen bonds (Kryachko ES, Sabin JR. Int. J. Quantum Chem. 2003;91:695–710), it is shown that some resultant structures possess the electron affinity that is 1.7 times higher compared to the canonical pair, which is definitely of interest in the view of the numerous phenomena associated with a charge transfer in and attachment of an electron to DNA. Objectives: Answer the questions raised in the Background, and show the realism of the tautomeric [А×Т]WC-mutation model modified in the present work on the example of the Watson-Crick pair [А×Т]WC that is dubbed as a pair-tautomerism model. Materials and Methods: The key method is a computer simulation based on the density functional method. All calculations performed in the present work use the package of programs GAUSSIAN with the density functional method invoking the Becke-Lee-Yang-Parr density functional, B3LYP. Results: The paper shows the existence and stability of paired tautomeric mutations in a pair of adenine-thymine and investigates to what wobble pairs it can lead. It is also shown that, due to the specific structure of the paired tautomeric mutation of the adenine-thymine pair, the mutation possesses a larger electronic affinity in comparison with the pair that it generates, and thus can be observed in reality and through it one can explain a number of phenomena of charge transfer in DNA, which, again, emphasizes its reality. Conclusions: On the one hand, a generalization of the Watson-Crick tautomeric hypothesis, proposed in this work, specifically for the adenine-thymine pair, the name of the paired tautomeric mutation. This mutation refers to dipole-binding-electron systems, which implies their high adiabatic electron affinity. The latter, on the other hand, emphasizes the realism of the proposed mutational model and its possible application to the explanation of the phenomena of charge transfer in DNA and the processes of attachment electron to DNA.


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