Toward improving the proteomic analysis of formalin-fixed, paraffin-embedded tissue

Carol B Fowler; Timothy J O’Leary; Jeffrey T Mason

doi:10.1586/14789450.2013.820531

Toward improving the proteomic analysis of formalin-fixed, paraffin-embedded tissue

Expert Review of Proteomics ◽

10.1586/14789450.2013.820531 ◽

2013 ◽

Vol 10 (4) ◽

pp. 389-400 ◽

Cited By ~ 28

Author(s):

Carol B Fowler ◽

Timothy J O’Leary ◽

Jeffrey T Mason

Keyword(s):

Proteomic Analysis ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

Formalin Fixed

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Impact of routinely employed procedures for tissue processing on the proteomic analysis of formalin-fixed paraffin-embedded tissue

PROTEOMICS - CLINICAL APPLICATIONS ◽

10.1002/prca.201300082 ◽

2014 ◽

Vol 8 (9-10) ◽

pp. 796-804 ◽

Cited By ~ 23

Author(s):

Peter Bronsert ◽

Juliane Weißer ◽

Martin L. Biniossek ◽

Markus Kuehs ◽

Bettina Mayer ◽

...

Keyword(s):

Proteomic Analysis ◽

Tissue Processing ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

Formalin Fixed

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Quantitative Proteomic Analysis of Formalin Fixed Paraffin Embedded Oral HPV Lesions from HIV Patients

The Open Proteomics Journal ◽

10.2174/1875039700801010040 ◽

2008 ◽

Vol 1 (1) ◽

pp. 40-45 ◽

Cited By ~ 33

Author(s):

Mohit Raja Jain ◽

Tong Liu ◽

Jun Hu ◽

Marlene Darfler ◽

Valerie Fitzhugh ◽

...

Keyword(s):

Proteomic Analysis ◽

Hiv Patients ◽

Quantitative Proteomic Analysis ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

Oral Hpv ◽

Formalin Fixed

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Identification of aldolase A as a potential diagnostic biomarker for colorectal cancer based on proteomic analysis using formalin-fixed paraffin-embedded tissue

Tumor Biology ◽

10.1007/s13277-016-5275-8 ◽

2016 ◽

Vol 37 (10) ◽

pp. 13595-13606 ◽

Cited By ~ 20

Author(s):

Tetsushi Yamamoto ◽

Mitsuhiro Kudo ◽

Wei-Xia Peng ◽

Hideyuki Takata ◽

Hideki Takakura ◽

...

Keyword(s):

Colorectal Cancer ◽

Proteomic Analysis ◽

Diagnostic Biomarker ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

Aldolase A ◽

Formalin Fixed

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Nm23/nucleoside diphosphate kinase-A as a potent prognostic marker in invasive pancreatic ductal carcinoma identified by proteomic analysis of laser micro-dissected formalin-fixed paraffin-embedded tissue

Clinical Proteomics ◽

10.1186/1559-0275-9-8 ◽

2012 ◽

Vol 9 (1) ◽

pp. 8 ◽

Cited By ~ 13

Author(s):

Tatsuyuki Takadate ◽

Tohru Onogawa ◽

Kiyonaga Fujii ◽

Fuyuhiko Motoi ◽

Sayaka Mikami ◽

...

Keyword(s):

Prognostic Marker ◽

Proteomic Analysis ◽

Ductal Carcinoma ◽

Nucleoside Diphosphate Kinase ◽

Pancreatic Ductal Carcinoma ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

Formalin Fixed ◽

Kinase A

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Critical comparison of sample preparation strategies for shotgun proteomic analysis of formalin-fixed, paraffin-embedded samples: insights from liver tissue

Clinical Proteomics ◽

10.1186/1559-0275-11-28 ◽

2014 ◽

Vol 11 (1) ◽

pp. 28 ◽

Cited By ~ 31

Author(s):

Alessandro Tanca ◽

Marcello Abbondio ◽

Salvatore Pisanu ◽

Daniela Pagnozzi ◽

Sergio Uzzau ◽

...

Keyword(s):

Sample Preparation ◽

Proteomic Analysis ◽

Liver Tissue ◽

Critical Comparison ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

Formalin Fixed

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Identification of Coiled-Coil Domain–Containing Protein 180 and Leucine-Rich Repeat–Containing Protein 4 as Potential Immunohistochemical Markers for Liposarcoma Based on Proteomic Analysis Using Formalin-Fixed, Paraffin-Embedded Tissue

American Journal Of Pathology ◽

10.1016/j.ajpath.2019.01.013 ◽

2019 ◽

Vol 189 (5) ◽

pp. 1015-1028 ◽

Cited By ~ 1

Author(s):

Tomoyuki Aoyama ◽

Akira Takasawa ◽

Kumi Takasawa ◽

Yusuke Ono ◽

Makoto Emori ◽

...

Keyword(s):

Proteomic Analysis ◽

Coiled Coil ◽

Leucine Rich Repeat ◽

Immunohistochemical Markers ◽

Coiled Coil Domain ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

Formalin Fixed

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Two methods for proteomic analysis of formalin-fixed, paraffin embedded tissue result in differential protein identification, data quality, and cost

PROTEOMICS ◽

10.1002/pmic.201500147 ◽

2015 ◽

Vol 15 (21) ◽

pp. 3744-3753 ◽

Cited By ~ 9

Author(s):

Stephen A. Luebker ◽

Melinda Wojtkiewicz ◽

Scott A. Koepsell

Keyword(s):

Data Quality ◽

Proteomic Analysis ◽

Protein Identification ◽

Differential Protein ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

Formalin Fixed

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Proteomic analysis of formalin‐fixed paraffin‐embedded renal tissue samples by label‐free MS: Assessment of overall technical variability and the impact of block age

PROTEOMICS - CLINICAL APPLICATIONS ◽

10.1002/prca.201200065 ◽

2013 ◽

Vol 7 (3-4) ◽

pp. 273-282 ◽

Cited By ~ 30

Author(s):

Rachel A. Craven ◽

David A. Cairns ◽

Alexandre Zougman ◽

Patricia Harnden ◽

Peter J. Selby ◽

...

Keyword(s):

Proteomic Analysis ◽

Renal Tissue ◽

Label Free ◽

Tissue Samples ◽

Technical Variability ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

The Impact ◽

Formalin Fixed

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Proteomic analysis of formalin-fixed paraffin-embedded colorectal cancer tissue using tandem mass tag protein labeling

Molecular BioSystems ◽

10.1039/c3mb70177h ◽

2013 ◽

Vol 9 (11) ◽

pp. 2686 ◽

Cited By ~ 14

Author(s):

Evelyne Maes ◽

Dirk Valkenborg ◽

Inge Mertens ◽

Valérie Broeckx ◽

Geert Baggerman ◽

...

Keyword(s):

Colorectal Cancer ◽

Proteomic Analysis ◽

Protein Labeling ◽

Cancer Tissue ◽

Tandem Mass ◽

Colorectal Cancer Tissue ◽

Tandem Mass Tag ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

Formalin Fixed

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High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry

PROTEOMICS ◽

10.1002/pmic.200800495 ◽

2008 ◽

Vol 8 (18) ◽

pp. 3715-3724 ◽

Cited By ~ 225

Author(s):

M. Reid Groseclose ◽

Pierre P. Massion ◽

Pierre Chaurand ◽

Richard M. Caprioli

Keyword(s):

Mass Spectrometry ◽

High Throughput ◽

Proteomic Analysis ◽

Imaging Mass Spectrometry ◽

Tissue Microarrays ◽

Maldi Imaging ◽

Formalin Fixed Paraffin ◽

Formalin Fixed Paraffin Embedded ◽

Maldi Imaging Mass Spectrometry ◽

Formalin Fixed

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