scholarly journals Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida)

2021 ◽  
Vol 25 (6) ◽  
pp. 647-651
Author(s):  
S. V. Shekhovtsov ◽  
Ya. R. Efremov ◽  
T. V. Poluboyarova ◽  
S. E. Peltek
Keyword(s):  
Genome Size ◽  
Phylogenetic Trees ◽  
Russian Far East ◽  
Far East ◽  
Nuclear Genome ◽  
Ancestral Population ◽  
Separate Species ◽  
Genetic Lineages ◽  
Cryptic Taxa ◽  
Eisenia Nordenskioldi

The size of the nuclear genome in eukaryotes is mostly determined by mobile elements and noncoding sequences and may vary within wide limits. It can differ significantly both among higher-order taxa and closely related species within a genus; genome size is known to be uncorrelated with organism complexity (the so-called C-paradox). Less is known about intraspecific variation of this parameter. Typically, genome size is stable within a species, and the known exceptions turn out be cryptic taxa. The Eisenia nordenskioldi complex encompasses several closely related earthworm species. They are widely distributed in the Urals, Siberia, and the Russian Far East, as well as adjacent regions. This complex is characterized by significant morphological, chromosomal, ecological, and genetic variation. The aim of our study was to estimate the nuclear genome size in several genetic lineages of the E.  nordenskioldi complex using flow cytometry. The genome size in different genetic lineages differed strongly, which supports the hypothesis that they are separate species. We found two groups of lineages, with small (250–500 Mbp) and large (2300–3500 Mbp) genomes. Moreover, different populations within one lineage also demonstrated variation in genome size (15–25 %). We compared the obtained data to phylogenetic trees based on transcriptome data. Genome size in ancestral population was more likely to be big. It increased or decreased independently in different lineages, and these processes could be associated with changes in genome size and/or transition to endogeic lifestyle.

scholarly journals ITS1-gene 5.8S rRNA-ITS2 and trnL-trnF sequence variability during the divergence of Elymus L. species of the flora of Siberia and Russian Far East

2015 ◽  
Author(s):  
Kseniya Dobryakova ◽  
Nikolay Nosov
Keyword(s):  
Comparative Analysis ◽  
Phylogenetic Trees ◽  
Russian Far East ◽  
Far East ◽  
Nuclear Genome ◽  
Rrna Gene ◽  
5.8S Rrna Gene ◽  
5.8S Rrna ◽  
Molecular Phylogenetic ◽  
Elymus Species

The phylogenetic relationship of Elymus species were analyzed by molecular phylogenetic methods. Comparative analysis of the sequences ITS1-5.8S rRNA gene-ITS2 of the nuclear genome species of genus Elymus and kinship group showed that the species of the genus Elymus have 3 haplotypes. Нaplotype A was found in Elymus species (sections: Turczaninovia, Goulardia и Elymus) and Elytrigia geniculata; haplotype B was found in Elymus species (sections: Turczaninovia, Goulardia); haplotype C (sections: Goulardia и Clinelymopsis) and E. repens. Comparative analysis of the sequences trnL-trnF of the chloroplast genome of genus Elymus related species showed that the species of the genus Elymus form strongly supported clade. The phylogenetic trees were constructed using Bayesian method. Refs 22. Figs 2. Tables 3.

scholarly journals Multilocus-phylogeny of the lichen-forming genus Bacidia s. str. (Ramalinaceae, Lecanorales) with special emphasis on the Russian Far East

2021 ◽  
Vol 53 (6) ◽  
pp. 441-455
Author(s):  
Julia V. Gerasimova ◽  
Aleksandr K. Ezhkin ◽  
Evgeny A. Davydov ◽  
Andreas Beck
Keyword(s):  
Phylogenetic Trees ◽  
Russian Far East ◽  
Far East ◽  
Molecular Evidence ◽  
Data Sets ◽  
Multigene Phylogeny ◽  
Protein Coding ◽  
Combined Data ◽  
Multilocus Phylogeny ◽  
The Russian Far East

AbstractTo clarify deep relationships among species lineages within Bacidia s. str., and to investigate the robustness of the deeper branches, we combined data from three traditionally used RNA-coding genes (nrITS, nrLSU and mtSSU) with two protein-coding genes (RPB1 and RPB2). The multigene phylogeny contained 48 newly generated sequences from the Russian Far East and all Bacidia s. str. sequences from GenBank (131 sequences). We subjected the alignments for the single and concatenated data sets to Bayesian inference (BI) and two maximum likelihood (ML) analyses (RAxML and IQ-TREE). The topologies of phylogenetic trees recovered from BI and ML analyses were highly concordant. The multilocus phylogeny of Bacidia s. str. was congruent with previous results based on nrITS sequences from the Russian Far East but with considerably higher support values for most of the deeper branches. A correlation between the recovered clades and apothecial pigments in the upper part of the hymenium and lateral exciple was observed. Based on morphological and molecular evidence, Bacidia obtecta is described as new to science. It was recovered as the sister lineage of B. elongata. The two species are alike in having up to four enlarged lumina cells along the exciple edge, but B. obtecta differs in the abundant crystals found in the upper hymenium and lateral exciple, and by having spores with fewer septa.

New records of Vaucheria (Ochrophyta, Xanthophyceae) in Russia

2020 ◽  
Vol 54 (1) ◽  
pp. 7-41
Author(s):  
V. S. Vishnyakov ◽  
R. E. Romanov ◽  
E. V. Chemeris ◽  
L. M. Kipriyanova ◽  
A. M. Chernova ◽  
...  
Keyword(s):  
Western Siberia ◽  
New Records ◽  
Russian Far East ◽  
Far East ◽  
European Russia ◽  
Separate Species ◽  
New Synonym ◽  
First Time ◽  
North Ossetia ◽  
The Russian Far East

This paper presents new data on the species of genus Vaucheria in Russia from analysis of original and museum collections. In total, 20 species were identified in 152 locations of 22 administrative regions of the European Russia, Western Siberia, and the Russian Far East. Vaucheria lii, a rare multiregional species new to Russia, has been found in 6 locations of the Vologda, Moscow, Nizhny Novgorod, Yaroslavl regions and North Ossetia. V. cruciata, V. schleicheri, V. taylorii, V. uncinata were recorded for the European Russia for the first time. V. birostris and V. pseudogeminata are new records for Western Siberia. Rank of V. terrestris var. nuoljae was raised up to separate species with V. terrestris var. major as a new synonym. The distributions of the frequently reported species, V. dichotoma and V. geminata, are critically analyzed.

Selection of the Area of Window Openings of Residential Buildings in Conditions of Monsoon Climate of the Far East of the Russian Federation and Northern Areas of China

2019 ◽  
pp. 27-33
Author(s):  
Aleksei K. Solovyov ◽  
Bi Guofu
Keyword(s):  
Residential Buildings ◽  
Russian Far East ◽  
Far East ◽  
Heat Losses ◽  
Natural Light ◽  
Monsoon Climate ◽  
Northern Areas ◽  
Artificial Illumination ◽  
Heat Penetration ◽  
Large Heat

The term “window” in architecture usually stands for an opening in a wall or roof for penetration of natural light, sunrays and fresh air in premises. Recently, the requirement of contact with environment is added to this condition. It is especially relevant for residential buildings where rooms are considered residential if they have windows. The energy consumption of a building depends on sizes, form and location of windows. In winter, windows cause huge heat losses, in summer, on the other hand, large heat enters a building via the windows and is required to be removed by means of air conditioning. Moreover, windows are used for penetration of natural light in premises, which assists in saving of large amounts of power for artificial illumination. This article discusses partial solving the problem of the energy efficiency of residential buildings by determining the most efficient area of windows in terms of energy spending for compensation of heat losses via windows in winter, elimination of heat penetration through them in summer and energy losses for artificial lighting throughout the year. The analysis of the results of calculation of power consumption for residential premises in conditions of monsoon climate of the Russian Far East and Northern areas of China (PRC) is provided.

Application of DNA Barcoding in Taxonomy and Phylogeny: An Individual Case of COI Partial Gene Sequencing from Seven Animal Species

2019 ◽  
Vol 53 (5) ◽  
pp. 375-384
Author(s):  
M. Drohvalenko ◽  
A. Mykhailenko ◽  
M. Rekrotchuk ◽  
L. Shpak ◽  
V. Shuba ◽  
...  
Keyword(s):  
Phylogenetic Trees ◽  
Far East ◽  
Individual Case ◽  
Ambystoma Mexicanum ◽  
Leaf Miner ◽  
Horse Chestnut ◽  
Natural Reserve ◽  
Rock Lizard ◽  
Sand Lizard ◽  
Lacerta Agilis

Abstract A part of the COI mitochondrial barcoding gene was sequenced from seven species of different taxonomical groups: Ambystoma mexicanum (Amphibia, Ambystomatidae), Darevskia lindholmi, Lacerta agilis exigua (Reptilia, Lacertidae), Erinaceus roumanicus (Mammalia, Erinaceidae), Macrobiotus sp. 1 and 2 (Eutardigrada, Macrobiotidae) and Cameraria ohridella (Insecta, Gracillariidae). The sequences were compared with available sequences from databases and positioned on phylogenetic trees when the taxa had not yet been sequenced. The presence of Mexican axolotls in herpetoculture in Ukraine was confirmed. The partial COI genes of the Crimean rock lizard and an eastern sub-species of the sand lizard were sequenced. We demonstrated the presence of two tardigrade mitochondrial lineages of the Macrobiotus hufelandi group in the same sample from the Zeya Natural Reserve in the Far East: one was nearly identical to the Italian M. macrocalix, and the other one is similar to M. persimilis and M. vladimiri. We also confirmed the presence of the invasive haplotype “A” of the horse chestnut leaf miner in Ukraine, in line with the hypothesized route of invasion from Central Europe.

Tax debt as a threat to the economic security of the Russian Far East

2020 ◽  
Vol 13 (2) ◽  
pp. 216-242
Author(s):  
V.A. Yakimova ◽  
A.A. Orekhova
Keyword(s):  
Russian Far East ◽  
Consumer Price Index ◽  
Far East ◽  
Federal District ◽  
Economic Security ◽  
Factors Affecting ◽  
Correlation And Regression Analysis ◽  
Debt Collection ◽  
Far Eastern ◽  
The Russian Far East

Subject. The article addresses the tax liabilities of taxpayers registered in the subjects of the Far Eastern Federal District, which should be paid to the consolidated budget of the Russian Federation, as well as the factors of the said debt growth. Objectives. Our aim is to assess the level of tax debt of regions of the Russian Far East and identify the correlation between the factors and the amount of tax debt. Methods. The study rests on methods of analysis, generalization, grouping, systematization, and the correlation and regression analysis. Results. We analyzed the level of tax debt for the entire Far Eastern Federal District and by region, identified factors affecting the growth of tax debt therein. The paper assesses the structure of tax debt by type of taxes and activity of debtors. The unveiled factors may help control changes in the size of tax debt in the Russian Far East and develop effective measures to improve the debt collection. Conclusions. The study shows that there is an increase in the tax debt in the regions of the Russian Far East, in the VAT in particular. The factor analysis revealed that the volume of sales of wholesale enterprises, investment in fixed capital, the consumer price index have the largest impact on the amount of tax debt.

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