scholarly journals Molecular Geometry, Vibrational Spectroscopic, Molecular Orbital and Mulliken Charge Analysis of 4-(Carboxyamino)-Benzoic Acid: Molecular Docking and Dft Calculations

Author(s):  
S.N. Saravanamoorthy ◽  
B. Vasanthi ◽  
R. Poornima

Structure based biological and chemical properties of 4-(carboxyamino)-benzoic acid has been studied by quantum chemical methods. The revamped geometric structure and its quantum chemical parameters were obtained by DFT-B3LYP/6-311G method. Normal mode analysis is performed to assign the fundamental vibrational frequencies as per the potential energy distribution (PED) by using the VEDA program. Simulation of IR and Raman spectral patterns are observed by refinement of scale factors. TD-DFT approach is used to explore the excited states of molecule and prediction of electronic absorption spectra. NMR chemical shifts of the molecule are determined by the gauge independent atomic orbital method. The molecular docking is performed to recognize the binding energy of the ligand with the dynamic site of protein. In our docking analysis, the protein 5DT6 shows the best results than other three proteins which could be used for further analysis. Further inter and intra molecular interactions, electrophilic, nucleophilic and chemical reactivity sites are found by molecular electrostatic potential, HOMO-LUMO and Global chemical reactivity descriptors. Thermodynamic property of the title compound is also reported. The determined quantum chemical parameters show high reactivity and the dipole moment was sufficiently high enough to induce nonlinear characteristics which are required for applications in optoelectronic devices.

2015 ◽  
Vol 11 (8) ◽  
pp. 3804-3818
Author(s):  
Mohamad Javad Bahrami ◽  
M. Yazdizadeh ◽  
M. Shahidi ◽  
S.M.A. Hosseini

The inhibition ability of [3-(4-methyl-pyridin-2-y1)-4-oxo-2-phenylimino-thiazolidin-5-ylidene]-acetic acid ethyl ester (MOTAE) on the corrosion behavior of carbon steel in 0.5 M sulfuric acid solution was investigated using weight loss and potentiodynamic polarization techniques. The inhibition efficiencies increased as the concentration of the compound was increased. The calculated inhibition efficiencies from the investigated methods were in good agreement. Potentiodynamic polarization measurements indicate that MOTAE acts as a mixed type inhibitor. The adsorption of inhibitor on the steel surface obeys Langmuir adsorption isotherm. Fourier transform infrared spectroscopy (FTIR) and scanning electron microscopy (SEM)‎ were used to characterize the surface of the alloy. The structure of inhibitor was optimized using three quantum chemical levels. Some quantum chemical parameters as well as Mulliken charge densities for this molecule were computed and discussed.


2019 ◽  
Vol 7 (1) ◽  
pp. 53-66 ◽  
Author(s):  
E. T. Oganesyan ◽  
S. S. Shatokhin ◽  
A. A. Glushko

45 compounds uniting 3 groups of derivatives of cinnamic acid, chalcone and flavanone, have been studied. Each of them includes 15 substances. The analyzed compounds contain a common structural fragment, which is a cinnamic acid residue (cinnamoyl fragment).The aimis to study the quantum-chemical parameters of the listed groups of the compounds in order to predict possible ways of their interaction with the most aggressive and dangerous of the active oxygen species (ROS) – a hydroxyl radical.Materials and methods.For the analyzed structures, the Mulliken charges (a.u.), bond numbers (Nμ), unsaturation index (IUA), and electron density values on all 9-carbon atoms of the cinnamoyl fragment have been determined. The calculations have been carried out on a workstation with an Intel Xeon E5-1620 3.5 GHz processor, 20 GB of RAM. The semi-empirical method PM7 was used (WinMopac 2016 program). The ORCA 4.1 program was used to calculate the energies of homolytic cleavage of the O – H bond.Results.The analysis of Mulliken charges (a.u.), bonded numbers (Nμ), unsaturation indices (IUA), and electron density revealed a number of regularities on the basis of which it can be concluded, that taking into account the nature of the substituent, the most probable for addition in the aryl residueare positions C-1, C-2, C-3, C-4 and C-5. In the propenone fragment, the radical НО∙ first attacks position 8, then 7. For the hydroxy-substituted, the energy of the homolytic breaking of the H – O bond has been determined and it has been established that the spatial difficulty of phenols (compounds 13k, 13x, 13f, 14k, 14x, 14f) H-O bonds are the smallest and on average are -160.63 kJ/mol. It has also been established that the higher the positive Mulliken charge on the carbon atom with which the phenolic hydroxyl is bound, the lower the energy of the homolytic breaking of the H – O bond and the more stable the resulting phenoxy radicalis.Conclusion.The carried out quantum chemical calculations allow us to conclude that the studied classes of compounds can be used to bind the hydroxyl radical formed in the body, causing various kinds of mutations, leading, among other things, to the development of oncological diseases.


2020 ◽  
Vol 8 (2) ◽  
pp. 112-123
Author(s):  
Eduard T. Oganesyan ◽  
Stanislav S. Shatokhin

42 derivatives of 2’,4’-dihydroxychalcone, flavanone and flavone, containing the hydroxy group in position 7 (ring "A"), as well as substituents in the ring "B", have been studied.The aim is to study the quantum-chemical parameters of 2',4'-dihydroxychalcone, flavanone and flavone derivatives containing a hydroxy group in position 7, in order to identify the effect of substituents on Mulliken charges (a.e) in the aromatic core "A", bond numbers (Nµ), the unsaturation index (IUA) and the electron density of the carbon atoms of the cinnamoyl fragment.Materials and methods. The listed above parameters have been calculated by the semi-empirical method PM7 (WinMopac 2016 program) on the workstation with an Intel Xeon E5-1620 3.5 GHz processor, 20 GB of RAM.Results. The analysis of the values of quantum-chemical parameters, as well as their comparison with the corresponding indicators presented in Report I, revealed a number of important features associated with the influence of the hydroxy group in position 7 (ring "A") on the studied quantum-chemical parameters of molecules. It has been established that the hydroxy group in the ring “A” does not significantly affect the Mulliken charge and the electron density of the carbon atoms of the propenone unit C-7→C-8→C-9. On atom C-9 (carbonyl carbon), the Mulliken charge always has a positive value, and the electron density is about 3.4670-3.4840 for all three groups of compounds. The transition from 2’,4’-dihydroxychalcone to flavanone and flavone by the formation of the pyrone heterocycle, is accompanied by an increase in the negative charge on C-8, which can be explained by the involvement of the oxygen heteroatom in the transmission of electronic effects. The hydroxy group in the ring “A”, has practically no effect on the charge and electron density of atoms. An analysis of the values of bond numbers and unsaturation indices suggests that atoms C-1 of 2’,4’-dihydroxychalcone and 7-hydroxyflavanone derivatives, are characterized by the lowest Nµ value; the lowest bond numbers are characteristic for atom C-8 derivatives of 7-hydroxyflavone. Consequently, the primary attack of the HO·radical will be directed at C-1 (in chalcones and flavanones) and at C-8 in flavones.Conclusion. The performed quantum-chemical calculations make it possible to analyze the effect on the main quantum-chemical parameters of the molecule, which can be useful in predicting the biological activity of flavanoid compounds due to their antiradical effect on reactive oxygen intermediate species (ROIs).


2021 ◽  
Vol 9 (2) ◽  
pp. 161-169
Author(s):  
E. T. Oganesyan ◽  
S. S. Shatokhin

The quantum-chemical parameters of 52 derivatives related to flavanones, flavanonoles, flavones and flavonoles with a phloroglucinic type of the A ring and containing electron-donating substituents in the B ring were studied.The aim is the analysis of the dynamics of changes in the electron density, bond numbers, free valence indices and unsaturation indices on carbon atoms C-7 → C-8 of the vinyl group of the main conjugation chain in relation to the position and number of substituents in the “B” ring and the type of the pharmacological activity.Materials and methods. The quantum-chemical parameters of the 4 analyzed groups of the compounds, have been calculated by the semi-empirical method PM7 (WinMopac 2016 program) on the workstation with an Intel Xeon E5-1620 3.5 GHz processor, 20 GB of RAM.Results and discussion. When comparing the quantum chemical parameters of the analyzed compounds, it was established that when the C-7 → C-8 multiple bond is formed, the free valency and unsaturation indices increase on both carbon atoms of the vinylene group in flavones and flavonols compared to the corresponding flavanones and flavanonols. This is explained by the fact that the value of the bond numbers Nµ on these atoms, on the contrary, decreases (Fµ = 4.732-Nµ). The transition from flavanone to flavone is accompanied by the formation of a vinyl group C-7 → C-8, and therefore both atoms from the sp3-hybridized state go into the sp2-state. The consequence of this transformation is a change in the electronegativity value and an increase in the unsaturation index of C-7 and C-8 atoms: C sp3 = 2.5;  Csp2 = 2.8. At the same time, the transition from flavanone to flavone leads to the formation of a conjugated system with the participation of π-electrons of the aromatic system “B”, C-7, C-8 atoms and the carbonyl group, which is commonly called the “main conjugation chain”. These structural changes, namely, the transition from a less oxidized flavanone to a more oxidized flavone, contribute to a decrease in the electron density on C-7 and C-8 atoms, and an increase in the total unsaturation of the molecules in general. Mulliken charges on C-7 of all groups of compounds are characterized by a positive value. As for the carbon atoms of the B fragment, the following features are revealed here: in the presence of one substituent -OH or -OCH3 on the carbon atom to which the substituent is bounded, the Mulliken charge is positive; if there are two substituents in the B ring -OH or -OCH3, as well as two -OCH3 groups, then the carbon atoms bonded to the indicated substituents also have a positive Mulliken charge; in the case of trihydroxy substituted in the C-2, C-3 and C-4 B ring, all three carbon atoms are characterized by a positive Mulliken charge; if there are methoxy groups in positions C-2, C-3 and C-4, then the positive Mulliken charge is concentrated only on C-2 and C-4 atoms, and on C-3 atom this charge has a negative value.Conclusion. The above data on the quantum-chemical parameters of the main conjugation chain indicate that the transition of C-7 and C-8 atoms to the sp2-hybrid state, leads to a decrease in the electron density and a decrease in the bond numbers, with a simultaneous increase in the indices of unsaturation and free valence on these atoms. Thus, the trigger mechanism of the anti-radical activity, primarily with respect to the HO • radical, is determined by the fact that this particle, electrophilic in its properties, will attach in the C-8  atom during an initial attack. 


2020 ◽  
Vol 22 (21) ◽  
pp. 12200-12208
Author(s):  
Ben Wang ◽  
Min Gao ◽  
Kohei Uosaki ◽  
Tetsuya Taketsugu

A periodicity implemented scheme of NBO theory and normal mode analysis has been employed to investigate the chemical bond strength tendency for aryl isocyanide molecules with different para-substituted groups adsorbed on the Pt(111) surface.


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