Morphology, morphogenesis and phylogeny of the new soil ciliate, Bistichella granulifera n. sp. (Protista, Ciliophora)

Abstract Background: Hypotrichous ciliates are showing extremely morphological diverse and complicated morphogenesis. However, many hypotrichs are still unknown/poorly-known and need to be explored. Recently, Foissner (2016) reassigned the species in Bistichella and Parabistichella. Due to lack of morphological and morphogenetic information, some problems were overlooked. In present work, a new species, Bistichella granulifera n. sp., was found in northern China. Based on its infraciliature, ontogenesis analyses and phylogenetic study, the phylogenetic position of Bistichella was discussed.Results: Bistichella granulifera n. sp. was characterized by having elongated oval body, two macronuclear nodules, cortical granules present, three frontal and three or four buccal cirri, three frontal rows with seven to ten cirri, usually two frontoventral rows with the left one usually terminates at 90% down length of body and no breaks in the right one. The main morphogenetic features of the novel species were as follows: (1) the posterior part of the old adoral membranelles is renewed; (2) frontoventral-transverse cirral anlagen III to V each form a frontal row, and anlagen VI to n each produce a frontoventral row; (3) both marginal rows and dorsal kineties develop intrakinetally; (4) the macronuclear nodules fuse to form a single mass. The gene sequence of Bistichella was investigated for the first time. Phylogenetic analyses based on the SSU rDNA sequences showed that the Bistichella groups with the non-dorsomarginalian hypotrichs.Conclusions: Morphology, morphogenesis and phylogenetic position of Bistichella granulifera n. sp., was investigated. Each frontoventral row originates from one anlage and only three bipolar dorsal kineties are present in the new species, which means it should belong to non-Dorsomarginalia rather than Amphisiellidae. Even though Bistichella has a close relationship with amphisiellids, due to the limited gene sequence, the phylogenetic position of Bistichella needs more data to be fully understood.

Download Full-text

Two new phyllocoptine species and new records of eriophyoid mites (Eriophyidae, Phyllocoptinae) from Crimea, with evaluation of the phylogenetic position of the new taxa using GenBank data

Systematic and Applied Acarology ◽

10.11158/saa.24.5.11 ◽

2019 ◽

Vol 24 (5) ◽

pp. 882

Author(s):

Philipp Chetverikov ◽

Pavel Klimov ◽

Viktoria Yu. Letukhova ◽

Géza Ripka ◽

Sarah Zukoff

Keyword(s):

New Species ◽

Phylogenetic Analyses ◽

Mite Species ◽

New Combination ◽

Phylogenetic Position ◽

Endemic Plant ◽

Plant Host ◽

Mitochondrial Coi ◽

Rdna Sequences ◽

Eriophyoid Mites

We describe two new species and report new occurrences for six species of eriophyid mites (Eriophyoidea: Eriophyidae) in Crimea: Abacarus denticulifer n. sp. from Agropyron cristatum (L.) Gaertn. (Poaceae), Aceria aculiformis Sukhareva 1986 from Melica ciliata L. (Poaceae), Aceria peucedani (Canestrini 1891) from Seseli tortuosum L. (Apiaceae), Anthocoptes recki (Bagdasarian 1972) n. comb. (from Tegonotus) from Pistacia atlantica subsp. mutica (Fisch. & C.A. Mey.) (Anacardiaceae), Epitrimerus inulae Farkas 1963 from Inula germanica L. (Asteraceae), Phyllocoptes sanctus n. sp. from Potentilla recta subsp. obscura (Willd.) (Rosaceae), Phyllocoptes bilobospinosus Chetverikov 2019 (in Chetverikov et al. 2019) from Tamarix spp. (Tamaricaceae), Tegoprionus dentatus (Nalepa 1891) from Galium verum L. (Rubiaceae). For an Indian phyllocoptine mite species associated with Apluda mutica L. (Poaceae), a new combination was proposed: Abacarus muticus (Sur & Chakrabarti 2017) n. comb. (from Mesalox). Mitochondrial COI and D2 28S rDNA sequences of three phyllocoptine species from Crimea were obtained: A. denticulifer n. sp. (GenBank accession numbers MK415989 and MK408623), P. bilobospinosus (MK408624), and P. sanctus n. sp. (MK415988 and MK408622). Comparison of all COI and D2 28S sequences of Eriophyoidea from GenBank showed that sequences JF920111 and JF920110 Aceria tulipae are identical to JF920101 Aceria tosichella, and D2 28S sequence KP297379 Tegolophus sp. is identical to KM111079 Shevtchenkella sp., which indicates either one or more misidentifications or sample contamination. Molecular phylogenetic analyses (a) confirmed the morphology-based assignment of A. denticulifer n. sp. to the Abacarus hystrix s.l. species complex, (b) supported the monophyly of Abacarus hystrix s.l., (c) revealed that the genera Phyllocoptes, Epitrimerus, and Calepitrimerus are paraphyletic, and (d) indicated that Phyllocoptini (including P. sanctus n. sp.), which are associated with Rosaceae and Caprifoliaceae, are monophyletic. The position of P. bilobospinosus was uncertain in all analyses. Based on the results of our study, it is recommended that descriptions of new species in large, putatively paraphyletic genera of Eriophyoidea include comparisons with mite species associated with the same plant family. Our work also provides new evidence that a species in a large complex of cryptic species could have evolved a distinct morphology if it is associated with an endemic plant host restricted to a geographically isolated area.

Download Full-text

Phylogenetic analysis reveals two morphologically unique new species in the genera Astrochapsa and Nitidochapsa (lichenized Ascomycota: Graphidaceae)

Phytotaxa ◽

10.11646/phytotaxa.189.1.19 ◽

2014 ◽

Vol 189 (1) ◽

pp. 268 ◽

Cited By ~ 7

Author(s):

VASUN POENGSUNGNOEN ◽

LEKA MANOCH ◽

PACHARA MONGKOLSUK ◽

KANSRI BOONPRAGOB ◽

SITTIPORN PARNMEN ◽

...

Keyword(s):

New Species ◽

Phylogenetic Analyses ◽

Phylogenetic Position ◽

Close Relative ◽

Fruiting Bodies ◽

Undescribed Species ◽

Rdna Sequences ◽

The Family ◽

Crustose Lichens ◽

Established Genus

Graphidaceae is the largest family of tropical crustose lichens, with nearly 2,400 known species, and exhibits a large diversity of ascoma morphologies. Ascomata that open by triangular marginal lobules that become recurved to form geaster-like fruiting bodies, so-called chroodiscoid ascomata, were recently shown to have evolved independently several times within the family. A special type of such ascomata is the gyrotremoid form in which the hymenium and excipulum are organized in concentric rings. In the present study, we address the phylogenetic position of two chroodiscoid species collected in Thailand that form aggregate or gyrotremoid, chroodiscoid ascomata, using a molecular phylogeny of nuclear LSU and mitochondrial SSU rDNA sequences of 92 Graphidaceae. Our morphological, chemical and phylogenetic analyses show that one species is an undescribed species in the genus Astrochapsa, here newly described as A. kalbii Poengsungnoen, Lücking & Lumbsch, with a unique, gyrotremoid ascoma morphology. The second species belongs in the recently established genus Nitidochapsa, which is a close relative of Ocellularia, and is here described as new species N. siamensis Poengsungnoen, Lücking & Lumbsch. Based on these findings, three further new combinations are proposed in the genus Nitidochapsa, viz. N. aggregata (Hale) Poengsungnoen, Lücking & Lumbsch, N. phlyctidea (Vain.) Lücking & Lumbsch, and N. stictoides (Leight.) Tehler, Lücking & Lumbsch. A key to all five species is presented.

Download Full-text

Description of a new species of Paraplehnia (Polycladida, Stylochoidea) from Japan, with inference on the phylogenetic position of Plehniidae

ZooKeys ◽

10.3897/zookeys.864.33955 ◽

2019 ◽

Vol 864 ◽

pp. 1-13 ◽

Cited By ~ 1

Author(s):

Yuki Oya ◽

Taeko Kimura ◽

Hiroshi Kajihara

Keyword(s):

New Species ◽

Phylogenetic Analyses ◽

Dna Barcode ◽

Phylogenetic Position ◽

Future Studies ◽

Rdna Sequences ◽

The Family ◽

28S Rdna Sequences ◽

Unidentified Species ◽

A New Species

We describe a new species of polyclad flatworm, Paraplehniaseisuiaesp. nov., from 298–310 m depths in the Sea of Kumano, West Pacific, Japan. Paraplehniaseisuiaesp. nov. is characterized by i) a developed muscular wall proximally occupying about one-third of the prostatic vesicle, ii) no common duct between the spermiducal bulbs and the prostatic vesicle, and iii) a genital pit between the male and female gonopores. We provide a partial sequence (712 bp) of the mitochondrial cytochrome c oxidase subunit I gene as a DNA barcode for the species. Our phylogenetic analyses based on 603-bp 28S rDNA sequences indicate that P.seisuiaesp. nov. is nested in a clade consisting of stylochoid species along with unidentified species of Stylochus. It suggests that Plehniidae belongs to Stylochoidea, although this should be confirmed by future studies that contain Plehniaarctica (Plehn, 1896), the type species of the type genus of the family. The interfamily relationship among the superfamily Stylochoidea remains poorly resolved.

Download Full-text

The genus Gennadas (Benthesicymidae: Decapoda): morphology of copulatory characters, phylogeny and coevolution of genital structures

Royal Society Open Science ◽

10.1098/rsos.171288 ◽

2017 ◽

Vol 4 (12) ◽

pp. 171288 ◽

Cited By ~ 5

Author(s):

Alexander L. Vereshchaka ◽

Anastasia A. Lunina ◽

Jørgen Olesen

Keyword(s):

New Species ◽

Anterior Part ◽

Phylogenetic Analyses ◽

Posterior Part ◽

Key To Species ◽

Internal Part ◽

Species Groups ◽

Aristaeomorpha Foliacea ◽

External Part ◽

Scanning Electron

Species within Gennadas differ from each other largely only in male (petasma) and female (thelycum) copulatory characters, which were restudied in scanning electron microscopy and used as a basis for phylogenetic analyses. Twenty-six petasma characters and 49 thelycum characters were identified. All 16 recognized species of Gennadas and Aristaeomorpha foliacea (outgroup) were included as terminals. Four robust monophyletic clades were retrieved, described and diagnosed as new species groups. The thelycum characters had greater impact on tree topology and supported deeper nodes than did the petasma characters. We hypothesize that features of the thelycum evolved first followed by aspects of the petasma. Relatively more conservative characters include parts of the sternites of the thelycum and of the petasma, while the scuti and protuberances on the thelycum and the shape and subdivisions of the petasma lobes are evolutionarily plastic. We identified two groups of copulatory characters, which are likely coupled functionally and interlinked evolutionarily: (i) the external part of the petasma and the posterior part of the thelycum and (ii) the internal part of the petasma and anterior part of the thelycum. We reconstruct possible mating position during copulation for each of the new species groups presented here. We also present an updated key to genera of Benthesicymidae and key to species of Gennadas .

Download Full-text

Description of Ditylenchus acantholimonis n. sp. (Rhabditida: Anguinidae) from Iran, a morphological and molecular phylogenetic study

Nematology ◽

10.1163/15685411-bja10115 ◽

2021 ◽

pp. 1-10

Author(s):

Samira Aliverdi ◽

Ebrahim Pourjam ◽

Majid Pedram

Keyword(s):

New Species ◽

Rhizosphere Soil ◽

Phylogenetic Analyses ◽

Phylogenetic Study ◽

Pharyngeal Bulb ◽

Lateral Field ◽

Molecular Phylogenetic Study ◽

Molecular Phylogenetic ◽

Golestan Province ◽

Tail Tip

Summary Ditylenchus acantholimonis n. sp. is described based on morphological, morphometric and molecular characters. It was isolated from the rhizosphere soil of Acantholimon sp. in Golestan province, Iran, and is mainly characterised by having four lines in the lateral field, a pyriform to bottle-shaped offset pharyngeal bulb, post-vulval uterine sac 36.6-56.1% of the vulva to anus distance long, and a subcylindrical to conical tail with widely rounded tip. It is further characterised by short to medium-sized females, 480-617 μm long, with a fine stylet having small rounded knobs, V = 80.8-83.6, c = 11.0-13.8, c′ = 3.3-4.6, and males with 16.0-17.0 μm long spicules. The new species was morphologically compared with six species having four lines in their lateral field, rounded tail tip and comparable morphometric data namely: D. dipsacoideus, D. emus, D. exilis, D. paraparvus, D. sturhani, and D. solani. It was also compared with two species, D. ferepolitor and D. angustus, forming a maximally supported clade in the 18S tree. The phylogenetic analyses using the maximal number of Anguinidae and several Sphaerularioidea genera based upon partial 18S and 28S rDNA D2-D3 sequences revealed that Ditylenchus is polyphyletic. In the 18S tree, the new species formed a clade with D. ferepolitor (KJ636374) and D. angustus (AJ966483); in the 28S tree it formed a poorly supported clade with D. phyllobios (KT192618) and Ditylenchus sp. (MG865719).

Download Full-text

Generic classification of some more hyphomycetes with solitary conidia borne on phialides

Canadian Journal of Botany ◽

10.1139/b98-104 ◽

1998 ◽

Vol 76 (9) ◽

pp. 1570-1583 ◽

Cited By ~ 7

Author(s):

W Gams ◽

K O'Donnell ◽

H -J Schroers ◽

M Christensen

Keyword(s):

New Species ◽

Phylogenetic Analyses ◽

Large Subunit ◽

Elongation Factor ◽

28S Rdna ◽

New Combination ◽

Rdna Sequences ◽

28S Rdna Sequences ◽

Three New Species ◽

Morphological Species

Unlike most phialide-producing fungi that liberate a multiplicity of conidia from each conidiogenous cell, only single conidia are formed on phialide-like conidiogenous cells in Aphanocladium, Verticimonosporium, and some species of Sibirina. A group of isolates obtained from soil of native Artemisia tridentata (sagebrush) grassland in Wyoming and from desert soil in Iraq is compared with these genera and classified as a fourth genus, Stanjemonium, honouring Stanley J. Hughes. Phylogenetic analyses of partial nuclear small- (18S) and large-subunit (28S) rDNA sequences indicate that Stanjemonium spp. form a monophyletic group with Emericellopsis. Sequences from the nuclear 18S and 28S rDNA were too conserved to resolve morphological species of Stanjemonium; however, phylogenetic analysis of b-tubulin and translation elongation factor 1a gene exons and introns resolved all species distinguished morphologically. Numerous conidiogenous cells or denticles are scattered along the cells of aerial hyphae in Aphanocladium and Stanjemonium spp., very rapidly collapsing into denticles in the former, somewhat more persistent and leaving broad scars in the latter. In Cladobotryum-Sibirina and Verticimonosporium spp., conidiogenous cells are discrete in terminal and intercalary whorls; phialides of the latter taxon are particularly swollen. The taxonomy of Aphanocladium is not yet resolved. Two species are recognized in Verticimonosporium. Three new species of Stanjemonium are described, and one new combination from Aphanocladium is proposed, along with one new species of Cladobotryum.Key words: Aphanocladium, Cladobotryum, conidiogenesis, hyphomycetes, molecular phylogeny, phialide, Stanjemonium, systematics, Verticimonosporium.

Download Full-text

Unexplored diversity of microscopic myxomycetes: evidence from environmental DNA

Plant Ecology and Evolution ◽

10.5091/plecevo.2019.1621 ◽

2019 ◽

Vol 152 (3) ◽

pp. 499-506 ◽

Cited By ~ 2

Author(s):

Oleg N. Shchepin ◽

Martin Schnittler ◽

Nikki H.A. Dagamac ◽

Dmitry V. Leontyev ◽

Yuri K. Novozhilov

Keyword(s):

New Species ◽

18S Rdna ◽

Sequence Similarity ◽

Phylogenetic Analyses ◽

Environmental Dna ◽

Full Length ◽

Detection Techniques ◽

Rdna Sequences ◽

18S Rdna Sequences ◽

Environmental Sequences

Background and aims – Recent studies showed the position of two slime mould species with microscopic sporocarps, Echinosteliopsis oligospora and Echinostelium bisporum, within the class Myxomycetes. These minute species are seldom seen in studies based on detection of sporocarps and can easily be confused with protosteloid amoebozoans.Methods – We searched all published ePCR data sets that targeted myxomycete 18S rDNA for the presence of environmental sequences similar to E. oligospora and Echinosteliales in traditional circumscription, and performed phylogenetic analyses that included short environmental sequences and full-length 18S rDNA sequences representing all the major groups of myxomycetes.Key results – We report 19 unique sequences which are closely related to E. bisporum or E. oligospora based on sequence similarity (73.1–95.2% similarity) and which form well-supported monophyletic clades with these species in phylogenetic analyses. They may represent new species that are not yet described. Our phylogeny based on full-length 18S rDNA sequences further confirms the position of E. bisporum and E. oligospora within myxomycetes and the paraphyly of the order Echinosteliales in its traditional circumscription.Conclusions – Our results show that ePCR-based studies can reveal myxomycete taxa that often escape detection by traditional approaches, including potentially new species, and thus provide valuable new data on diversity and ecology of myxomycetes. As such, strategies for studying myxomycetes biodiversity should be revised, focusing also on molecular detection techniques in addition to the sporocarp-based ones.

Download Full-text

Molecular and morphological characterisation of Cryptaphelenchus baujardi n. sp. (Nematoda: Ektaphelenchinae), a new species based on two populations from Iran

Nematology ◽

10.1163/15685411-00003194 ◽

2019 ◽

Vol 21 (1) ◽

pp. 45-56 ◽

Cited By ~ 1

Author(s):

Farzad Aliramaji ◽

Esmaeil Miraeiz ◽

Ebrahim Pourjam ◽

Ramin Heydari

Keyword(s):

New Species ◽

Phylogenetic Analyses ◽

Lsu Rdna ◽

New Taxon ◽

Male Body ◽

Northern Iran ◽

Lateral Field ◽

Rdna Sequences ◽

Strong Resemblance ◽

Two Populations

Summary Cryptaphelenchus baujardi n. sp. is described and illustrated based on two populations from Golestan province, northern Iran. The new species is characterised by female and male body length of 224 (190-261) and 215 (195-229) μm, respectively, offset cephalic region with a shallow constriction, delicate stylet 6.6 (6.0-7.0) μm long, four incisures in the lateral field, presence of a rudimentary post-uterine sac in the female gonoduct, elongate-conoid female tail ending in an acute to finely rounded terminus, male tail conical, male with seven caudal papillae and delicate spicules. The new species shows a strong resemblance to C. varicaudatus and C. iranicus, but has a sclerotised mass near the tip of the spicule and an indistinct spermatheca. Phylogenetic analyses based on both partial SSU and LSU rDNA sequences confirm its status as a new taxon.

Download Full-text

The green puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New generic and species concept among this widely distributed genus

Phytotaxa ◽

10.11646/phytotaxa.441.2.2 ◽

2020 ◽

Vol 441 (2) ◽

pp. 113-142 ◽

Cited By ~ 1

Author(s):

THOMAS PRÖSCHOLD ◽

TATYANA DARIENKO

Keyword(s):

New Species ◽

Species Delimitation ◽

Species Concept ◽

Phylogenetic Analyses ◽

Complex Life Cycle ◽

New Genera ◽

Rdna Sequences ◽

Taxonomic History ◽

Culture Independent ◽

Science Community

Phylogenetic analyses have revealed that the traditional order Prasiolales, which contains filamentous and pseudoparenchymatous genera Prasiola and Rosenvingiella with complex life cycle, also contains taxa of more simple morphology such as coccoids like Pseudochlorella and Edaphochlorella or rod-like organisms like Stichococcus and Pseudostichococcus (called Prasiola clade of the Trebouxiophyceae). Recent studies have shown a high biodiversity among these organisms and questioned the traditional generic and species concept. We studied 34 strains assigned as Stichococcus, Pseudostichococcus, Diplosphaera and Desmocococcus. Phylogenetic analyses using a multigene approach revealed that these strains belong to eight independent lineages within the Prasiola clade of the Trebouxiophyceae. For testing if these lineages represent genera, we studied the secondary structures of SSU and ITS rDNA sequences to find genetic synapomorphies. The secondary structure of the V9 region of SSU is diagnostic to support the proposal for separation of eight genera. The complex taxonomic history was summarized and revised. The ITS-2/CBC approach was used for species delimitation. Considering all these results, we revised the genera Stichococcus, Pseudostichococcus, Diplosphaera and Desmococcus and proposed four new genera and four new species for the science community. The usage of the V9 region and the ITS-2 barcodes discovered potential new species among the Stichococcus-like organisms in culture-independent studies.

Download Full-text

Genetic diversity of the genus Terfezia (Pezizaceae, Pezizales): New species and new record from North Africa

Phytotaxa ◽

10.11646/phytotaxa.334.2.7 ◽

2018 ◽

Vol 334 (2) ◽

pp. 183 ◽

Cited By ~ 2

Author(s):

Fatima El-Houaria ZITOUNI-HAOUAR ◽

JUAN RAMÓN CARLAVILLA ◽

GABRIEL MORENO ◽

JOSÉ LUIS MANJÓN ◽

ZOHRA FORTAS

Keyword(s):

New Species ◽

North Africa ◽

Phylogenetic Analyses ◽

Ribosomal Subunit ◽

Morphological Characters ◽

Phylogenetic Position ◽

Unique Combination ◽

Large Ribosomal Subunit ◽

First Time ◽

A New Species

Morphological and phylogenetic analyses of large ribosomal subunit (28S rDNA) and internal transcribed spacer (ITS rDNA) of Terfezia samples collected from several bioclimatic zones in Algeria and Spain revealed the presence of six distinct Terfezia species: T. arenaria, T. boudieri, T. claveryi; T. eliocrocae (reported here for the first time from North Africa), T. olbiensis, and a new species, T. crassiverrucosa sp. nov., proposed and described here, characterized by its phylogenetic position and unique combination of morphological characters. A discussion on the unresolved problems in the taxonomy of the spiny-spored Terfezia species is conducted after the present results.

Download Full-text