scholarly journals Quantitative Trait Loci and Candidate Genes associated with Freezing Tolerance of Winter Triticale (×Triticosecale Wittmack)

2021 ◽  
Author(s):  
Iwona Wąsek ◽  
Mateusz Dyda ◽  
Gabriela Julia Golebiowska ◽  
Mirosław Tyrka ◽  
Marcin Rapacz ◽  
...  
Keyword(s):  
Chlorophyll Fluorescence ◽  
Freezing Tolerance ◽  
Quantitative Trait ◽  
Electrolyte Leakage ◽  
Transmembrane Helix ◽  
Interval Mapping ◽  
Tolerance Test ◽  
Single Marker Analysis ◽  
Chlorophyll Fluorescence Parameters ◽  
Fluorescence Parameters

Abstract Freezing tolerance of triticale is a major trait contributing to its winter hardiness. The identification of genomic regions – quantitative trait loci (QTLs) and molecular markers associated with freezing tolerance in winter hexaploid triticale was the aim of this study. For that purpose a new genetic linkage map was developed for the population of 92 doubled haploid lines derived from ‘Hewo’ × ‘Magnat’ F1 hybrid. Those lines, together with parents were subjected to freezing tolerance test three times during two winter seasons. Plants were grown and cold-hardened under natural fall/winter conditions and then subjected to freezing in controlled conditions. Freezing tolerance was assessed as the plants recovery (REC), the electrolyte leakage (EL) and chlorophyll fluorescence parameters (JIP) after freezing. Three consistent QTLs for several fluorescence parameters, electrolyte leakage and the percentage of the survived plants were identified with composite interval mapping (CIM) and single marker analysis (SMA). The first locus Qfr.hm-7A.1 explained 9 % of variation of both electrolyte leakage and plants recovery after freezing. Two QTLs explaining up to 12 % of variation in plants recovery and shared by selected chlorophyll fluorescence parameters were found on 4R and 5R chromosomes. Finally, main locus Qchl.hm-5A.1 was detected for chlorophyll fluorescence parameters that explained up to 19.6 % of phenotypic variation. The common QTLs located on chromosomes 7A.1, 4R and 5R, clearly indicated physiological and genetic relationship of the plant survival after freezing with the ability to maintain optimal photochemical activity of the photosystem II and preservation of the cell membranes integrity. The genes located in silico in the identified QTLs include those encoding transmembrane helix proteins like potassium channel and phosphoric ester hydrolase involved in response to osmotic stress as well as proteins involved in the regulation of the gene expression, chloroplast RNA processing and pyrimidine salvage pathway. Additionally, our results confirm that the JIP test is a valuable tool to evaluate freezing tolerance of triticale under unstable winter environments.

scholarly journals Quantitative trait loci and candidate genes associated with freezing tolerance of winter triticale (× Triticosecale Wittmack)

2021 ◽  
Author(s):  
I. Wąsek ◽  
M. Dyda ◽  
G. Gołębiowska ◽  
M. Tyrka ◽  
M. Rapacz ◽  
...  
Keyword(s):  
Chlorophyll Fluorescence ◽  
Quantitative Trait Loci ◽  
Freezing Tolerance ◽  
Quantitative Trait ◽  
Electrolyte Leakage ◽  
Interval Mapping ◽  
Single Marker Analysis ◽  
Chlorophyll Fluorescence Parameters ◽  
Fluorescence Parameters ◽  
Trait Loci

Abstract Freezing tolerance of triticale is a major trait contributing to its winter hardiness. The identification of genomic regions — quantitative trait loci (QTL) and molecular markers associated with freezing tolerance in winter hexaploid triticale — was the aim of this study. For that purpose, a new genetic linkage map was developed for the population of 92 doubled haploid lines derived from ‘Hewo’ × ‘Magnat’ F1 hybrid. Those lines, together with parents were subjected to freezing tolerance test three times during two winter seasons. Plants were grown and cold-hardened under natural fall/winter conditions and then subjected to freezing in controlled conditions. Freezing tolerance was assessed as the plants recovery (REC), the electrolyte leakage (EL) from leaves and chlorophyll fluorescence parameters (JIP) after freezing. Three consistent QTL for several fluorescence parameters, electrolyte leakage, and the percentage of the survived plants were identified with composite interval mapping (CIM) and single marker analysis (SMA). The first locus Qfr.hm-7A.1 explained 9% of variation of both electrolyte leakage and plants recovery after freezing. Two QTL explaining up to 12% of variation in plants recovery and shared by selected chlorophyll fluorescence parameters were found on 4R and 5R chromosomes. Finally, main locus Qchl.hm-5A.1 was detected for chlorophyll fluorescence parameters that explained up to 19.6% of phenotypic variation. The co-located QTL on chromosomes 7A.1, 4R and 5R, clearly indicated physiological and genetic relationship of the plant survival after freezing with the ability to maintain optimal photochemical activity of the photosystem II and preservation of the cell membranes integrity. The genes located in silico within the identified QTL include those encoding BTR1-like protein, transmembrane helix proteins like potassium channel, and phosphoric ester hydrolase involved in response to osmotic stress as well as proteins involved in the regulation of the gene expression, chloroplast RNA processing, and pyrimidine salvage pathway. Additionally, our results confirm that the JIP test is a valuable tool to evaluate freezing tolerance of triticale under unstable winter environments.

Genetic variability and identification of quantitative trait loci affecting plant growth and chlorophyll fluorescence parameters in the model legume Medicago truncatula under control and salt stress conditions

2014 ◽  
Vol 41 (9) ◽  
pp. 983 ◽  
Author(s):  
Sarah Exbrayat ◽  
Georges Bertoni ◽  
Mohamad Reza Naghavie ◽  
Ali Peyghambari ◽  
Mounavar Badri ◽  
...  
Keyword(s):  
Salt Stress ◽  
Chlorophyll Fluorescence ◽  
Quantitative Trait Loci ◽  
Genetic Variability ◽  
Plant Growth ◽  
Medicago Truncatula ◽  
Quantitative Trait ◽  
Chlorophyll Fluorescence Parameters ◽  
Model Legume ◽  
Fluorescence Parameters

Salinity is one of the major stresses that limits crop production worldwide and affects most physiological activities in plants. In order to study the genetic control of salt stress in the model legume Medicago truncatula Gaertn., an experiment was undertaken to determine the genetic variability and to identify quantitative trait loci (QTLs) controlling several traits related to plant growth and physiology in a population of recombinant inbred lines. Shoot and root DW, relative water content, leaf area, chlorophyll content, chlorophyll fluorescence parameters, and Na+ and K+ in shoots and roots were measured. The experiment was carried out with three replications. ANOVA showed a large genetic variation and transgressive segregation for the traits studied, suggesting putative complex tolerance mechanisms. A total of 21 QTLs were detected under control conditions and 19 QTLs were identified under 100 mm salt stress conditions, with three QTLs being common to both situations. The percentage of total phenotypic variance explained by the QTLs ranged from 4.6% to 23.01%. Overlapping QTLs for different traits were also observed, which enables us to discriminate independent traits from linked ones. The results should be helpful information for further functional analysis of salt tolerance in M. truncatula.

scholarly journals The Differential Responses of Chlorophyll Fluorescence Parameters and Lipid Metabolism to Low Temperature between Cycas Bifida and C. panzhihuaensis

2020 ◽  
Author(s):  
Yanling Zheng ◽  
Meng Wang ◽  
Shijun Hu ◽  
Jianrong Wu ◽  
Zhixiang Yu
Keyword(s):  
Chlorophyll Fluorescence ◽  
Lipid Metabolism ◽  
Low Temperature ◽  
Freezing Tolerance ◽  
Low Temperatures ◽  
Photosynthetic Activity ◽  
Membrane Lipids ◽  
Chlorophyll Fluorescence Parameters ◽  
Fluorescence Parameters ◽  
Differential Responses

Abstract Background: Our previous work showed that freezing tolerance of Cycas panzhihuaensis was higher than that of C. bifida. However, the mechanisms underlying the differential freezing tolerance of the two species is not clear. Photosynthesis is one of the most temperature-sensitive processes. Lipids play important roles in membrane structure, signal transduction and energy storage which are closely related to stress response of plants. Hence, the chlorophyll fluorescence parameters and lipid profiles of the two species were characterized to explore the dynamic changes of photosynthetic activity and lipid metabolism following low temperature and subsequent recovery. Results: The photosynthetic activity decreased significantly with the decrease of temperatures in C. bifida, reaching to zero after recovery, which however, was little affected in C. panzhihuaensis. Lipid composition of C. bifida was more affected by cold and freezing treatments than C. panzhihuaensis. Compared to the control, the proportions of all the lipid categories recovered to the original level for C. panzhihuaensis but those of most lipid categories changed significantly for C. bifida after 3 d of recovery. Particularly, the glycerophospholipids and prenol lipids of C. bifida degraded severely during recovery period for C. bifida. The changes of acyl chain length and double bond index (DBI) occurred in more lipid classes immediately after low temperatures in C. panzhihuaensis than those in C. bifida. DBI of the total main membrane lipids of C. panzhihuaensis was significantly higher than that of C. bifida following all the treatments. Conclusions: The results of chlorophyll fluorescence parameters confirmed that the freezing tolerance of C. panzhihuaensis was higher than that of C. bifida. The lipid metabolism of the two species had differential responses to low temperatures. The homeostasis and plastic adjustment of lipid metabolism and the higher level of DBI of the main membrane lipids might contribute to the higher tolerance of C. panzhihuaensis to low temperature.

Mapping QTLs for yield components and chlorophyll a fluorescence parameters in wheat under three levels of water availability

2011 ◽  
Vol 9 (2) ◽  
pp. 291-295 ◽  
Author(s):  
Ilona Czyczyło-Mysza ◽  
Izabela Marcińska ◽  
Edyta Skrzypek ◽  
Małgorzata Chrupek ◽  
Stanisław Grzesiak ◽  
...  
Keyword(s):  
Drought Stress ◽  
Chlorophyll A ◽  
Chlorophyll A Fluorescence ◽  
Wheat Yield ◽  
Dry Weight ◽  
Interval Mapping ◽  
Main Stem ◽  
Severe Drought ◽  
Single Marker Analysis ◽  
Fluorescence Parameters

Drought is one of the major factors limiting wheat yield in many developing countries worldwide. Parameters of chlorophyll a fluorescence kinetics under drought stress conditions have been used to characterize dehydration tolerance in wheat. In the present study, a set of 94 doubled haploid lines obtained from Chinese Spring × SQ1 (CSDH), mapped with 450 markers, was evaluated for yield (grain dry weight/main stem ear), number of grains/main stem ear (NG) and chlorophyll a fluorescence parameters (FC) under moderate and severe drought stress, and compared with results for well-watered plants. quantitative trait loci (QTLs) were identified using Windows QTLCartographer version 2.5 software and the results were analysed using single-marker analysis (SMA) and composite interval mapping (CIM). Analysis using SMA and CIM showed mostly similar QTLs for all traits, though more QTLs were identified by SMA than by CIM. The genetic control of yield, NG and FC varied considerably between drought-stressed and non-stressed plants. Although no major QTL co-locations were found for yield and FC using CIM, the co-location of QTLs for NG, yield and Fv/Fm in drought-stressed plants was observed on chromosome 5A using SMA.

Photoinduced toxicity of fluoranthene on primary processes of photosynthesis in lichens

2006 ◽  
Vol 39 (1) ◽  
pp. 91-100 ◽  
Author(s):  
Marie KUMMEROVÁ ◽  
štěpán ZEZULKA ◽  
Jana KRULOVÁ ◽  
Jan TŘÍSKA
Keyword(s):  
Chlorophyll Fluorescence ◽  
Bioconcentration Factor ◽  
Lichen Species ◽  
Chlorophyll Fluorescence Parameters ◽  
Fluorescence Parameters ◽  
Photochemical Processes ◽  
Symbiotic Algae ◽  
Lasallia Pustulata ◽  
Photoinduced Toxicity ◽  
Umbilicaria Hirsuta

The effect of increasing concentrations (0·01, 0·1, 1 and 5 mg l−1) of intact (FLT) and photo-modified (phFLT) fluoranthene and the duration of exposure (1, 2, 3, 5 and 7 days) on the chlorophyll fluorescence parameters (F0, FV/FM, and ΦII) of symbiotic algae in the thalli of two foliose lichens Lasallia pustulata and Umbilicaria hirsuta was investigated. In addition the FLT concentration in thalli of both lichen species was determined and a bioconcentration factor (BCF) was calculated. The results obtained demonstrated that the concentrations of FLT and especially phFLT (1 and 5 mg l−1) applied affected primary photochemical processes of photosynthesis in the algae of both lichen species. The F0 value increased and the FV/FM and ΦII values decreased. The fluoranthene content in the thallus of both lichen species increased with increasing FLT concentration in the environment.

scholarly journals Photosynthetic response to nitrogen source and different ratios of nitrogen and phosphorus in toxic cyanobacteria, Microcystis aeruginosa FACHB-905

2016 ◽  
Author(s):  
Guotao Peng ◽  
Zhengqiu Fan ◽  
Xiangrong Wang ◽  
Chen Chen
Keyword(s):  
Chlorophyll Fluorescence ◽  
Algal Blooms ◽  
Freshwater Ecosystems ◽  
Cyanobacterial Blooms ◽  
Photosynthetic Response ◽  
Nitrogen And Phosphorus ◽  
Ammonium Toxicity ◽  
Chlorophyll Fluorescence Parameters ◽  
Fluorescence Parameters ◽  
N Assimilation

<p>The frequent outbreak of cyanobacterial blooms has become a worldwide phenomenon in freshwater ecosystems. Studies have elucidated the close relationship between harmful algal blooms and nutrient contents, including the loading of nitrogen and the ratios of nitrogen (N) and phosphorus (P). In this study, the effect of inorganic (nitrate and ammonium) and organic (urea) nitrogen at varied N/P ratios on the <em>Microcystis</em> <em>aeruginosa</em> FACHB-905 accumulation and photosynthesis was investigated.  The optimal NO<sub>3</sub>/P in this study were 30~50 indicated by the cell abundance (4.1×10<sup>6</sup>/mL), pigment concentration (chlorophyll a 3.1 mg/L,  phycocyanin 8.3mg/L), and chlorophyll fluorescence parameters (<em>rETR</em>, <em>E<sub>k</sub>, α, φPSII</em> and <em>F<sub>v</sub>/F<sub>m</sub> </em>values), while too high NO<sub>3</sub>-N (N/P=100:1) would cause an intracellular nitrate inhibition, leading to a decrease of photosynthetic activity. In addition, low concentration of NH<sub>4</sub>-N (N/P=4:1) would favor the <em>M. aeruginosa </em>growth and photosynthesis, and high NH<sub>4</sub>/P ratio (&gt;16) would rise the ammonium toxicity of algal cells and affect the N assimilation. In urea treatments, <em>M. aeruginosa </em>responded similarly to the NH<sub>4</sub>-N treatments both in growth curves and pigment contents, and the favorable N/P ratio was between 16~30, suggested by the chlorophyll fluorescence parameters. The results demonstrated that the various chemical forms of N and N/P ratios have a significant impact on <em>Microcystis</em> abundance and photosynthesis. More work is needed to figure out the mechanism of nitrogen utilization by <em>Microcystis</em> and  the photosynthetic response to nutrient stress at the molecular level.</p>

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