scholarly journals AN ELECTROPHORETIC COMPARISON OF CULTIVATED MEMBERS OF THE CUCURBITACEAE

HortScience ◽  
1992 ◽  
Vol 27 (6) ◽  
pp. 648a-648
Author(s):  
Vladimir Meglic ◽  
Jack E. Staub ◽  
Larry D. Knerr
Keyword(s):  
Cluster Analysis ◽  
Morphological Diversity ◽  
Complete Linkage ◽  
Enzyme Systems ◽  
Or Groups ◽  
Linkage Method ◽  
Complete Linkage Method

Thirty-eight cultivated accessions of the diverse Cucurbitaceae were electrophoretically surveyed using 13 enzyme systems. Included were representatives from 6 of the 6 Cucurbitaceae tribes, 9 genera, and 17 species. Additionally, several cultivars or groups were included for those species possessing marked morphological diversity such as the 7 groups of Cucumis melo var. melo and 7 of the numerous cultivars representing Cucurbita pepo. Zymograms were scored for the presence or absence of bands measured in mm from the origin. Cluster analysis (complete linkage method) was used to detect affinities among the accession surveyed. Data suggest that: 1) Cucumis melo (x=12) possessed greater biochemical affinity with C. sativus (x=7) than with either C. anguira or C. metuliferus (both x=12); 2) Sechium edule and Cyclanthera pedata. both members of the tribe Sicyeae, were more closely associated with members of other tribes than with each other; 3) Some cultivars of Cucurbita pepo shared greater affinity with Cucurbita moschata than with other cultivars of C. pepo. Additional observations as well as their possible implications will be presented.

scholarly journals Morphological diversity and relationship among cashew (Anacardium occidentale L) individuals in three districts of Southeast Sulawesi, Indonesia

2021 ◽  
Vol 886 (1) ◽  
pp. 012056
Author(s):  
D. Boer ◽  
N. Ladati ◽  
Jumarno ◽  
Irwan ◽  
M A Arsyad ◽  
...  
Keyword(s):  
Coefficient Of Variation ◽  
Morphological Diversity ◽  
Anacardium Occidentale ◽  
Complete Linkage ◽  
Morphological Variations ◽  
Coefficients Of Variation ◽  
The Family ◽  
Linkage Method ◽  
Morphological Variables ◽  
Complete Linkage Method

Abstract Cashew (Anacardium occidentale L), a species belonging to the family Anacardiaceae, has been cultivated throughout most of Indonesia’s areas and has become a priority commodity in Southeast Sulawesi for years. However, the information about its variation on morphology and relationship among individuals are still limited. This study aimed to determine the morphological variations and relationships among cashew individuals in three districts (Konawe, South Konawe, and East Kolaka) of Southeast Sulawesi. As many as ninety individuals were analyzed on 15 morphological variables for the variations and 47 variables using the complete linkage method based on Gower distance for the clustering. The coefficients of variation were varied on all evaluated variables. The highest was the height of main branches (cm), ranging from 47.32 % to 73.72 %. Meanwhile, nut length had the lowest coefficient of variation (6.75%-7.99%). The individuals were divided into two main clusters with two sub-clusters for each cluster.

scholarly journals A Cluster Analysis with Complete Linkage and Ward's Method for Health Service Data in Makassar City

Jurnal Varian ◽  
2021 ◽  
Vol 4 (2) ◽  
pp. 109-116
Author(s):  
Isma Muthahharah ◽  
Agusalim Juhari
Keyword(s):  
Cluster Analysis ◽  
Health Service ◽  
Health Services ◽  
Good Health ◽  
Health Care Facilities ◽  
Complete Linkage ◽  
Excellent Service ◽  
Excellent Health ◽  
Linkage Method ◽  
Service Data

Health care facilities are a place used to organize health efforts. Health service data in Makassar City has not shown which sub-districts have excellent service criteria, good enough, and not good. Therefore, it is necessary to group sub-districts with cluster analysis using hierarchy method. The hierarchy method used in this study is only 2, namely complete linkage and ward's method. Complete linkage method is the opposite of the approach to the minimum distance principle that is the furthest distance between objects while Ward's Method is a method that aims to minimize variance between objects in one cluster. There are four health services used, namely Hospitals, Health Centers, Home Care and Telemedicine with 15 sub-districts. This study also used a validity test namely Index Davies Bouldin (IDB) to determine the criteria of health services. The results of the analysis on complete linkage formed 3 clusters, namely cluster 1 with good health services, cluster 2 with excellent health services, and cluster 3 with poor health services. In addition, ward's Method also formed 3 clusters, namely cluster 1 with good health services, clusters 2 with poor service, and cluster 3 with excellent health services.

scholarly journals Assessment of Water Quality of Major Tributaries in Seoul using Water Quality Index and Cluster Analysis

2020 ◽  
Vol 42 (10) ◽  
pp. 452-462
Author(s):  
Jinhyo Lee ◽  
Hyunju Ha ◽  
Manho Lee ◽  
Mokyoung Lee ◽  
Taeho Kim ◽  
...  
Keyword(s):  
Water Quality ◽  
Cluster Analysis ◽  
River Water ◽  
Quality Index ◽  
Water Quality Management ◽  
River Water Quality ◽  
Quality Information ◽  
Linkage Method ◽  
And Cluster Analysis

Objectives : 17 water quality measurement networks (WQMNs, tributaries) in Seoul were analyzed by using NSFWQI and cluster analysis to provide basic data for future river water quality management so that citizens could easily and comprehensively understand the water quality information on the rivers in Seoul.Methods : For the past 3 years (2015~2017), in order to estimate WQI, 9 items, DO (% sat), Fecal coliform, pH, BOD, Temperature change (TC), TP, NO3-, Turbidity and Total solids, were selected from among the 19 water quality data measurement items produced monthly from 17 WQMNs in Seoul. WQI was derived and graded using NSFWQI and cluster analysis was performed using Ward Linkage Method, SOM (Self Organizing Map).Results and Discussion : Water quality of most water quality monitoring networks was BOD Ⅱ grade (slightly good) or higher and TP Ⅲ grade (normal) or higher according to the standard of water quality and water ecosystem river living environment, and NSFWQI was also 64 (Medium)~89 (Good). All showed good water quality. NSFWQI does not show a significant difference by season, so it is believed that it is affected by anthropogenic sources rather than seasonal effects. As a result of examining the correlation between NSFWQI and water quality level according to environmental standards, it was confirmed that R2 has a relatively good correlation with 0.78, and there is no clear difference between the two groups, and through this, it was found that the currently implemented water quality rating system and NSFWQI are well matched. As a result of cluster analysis using ward linkage method and SOM for 17 WQMNs, it was largely divided into 6 groups according to water quality characteristics.Conclusions : It is important to manage pollution sources to systematically manage river water quality as a water resource. It is therefore expected that by converting from the complicated and various water quality information such as is found in this study into a simple water quality index and grouping, the river water quality can be easily understood and can be utilized in the future as basic data for water quality management in Seoul.

scholarly journals Perbandingan Metode Single Linkage, Complete Linkage Dan Average Linkage dalam Pengelompokan Kecamatan Berdasarkan Variabel Jenis Ternak Kabupaten Sidoarjo

Jurnal INFORM ◽  
2019 ◽  
Vol 4 (2) ◽  
Author(s):  
Sulthan Fikri Mu'afa ◽  
Nurissaidah Ulinnuha
Keyword(s):  
Farm Animals ◽  
Single Linkage ◽  
Daily Lives ◽  
Food Ingredients ◽  
Complete Linkage ◽  
Material Sources ◽  
Average Linkage ◽  
Linkage Method ◽  
Livestock Products ◽  
Labor Resources

Livestock products are widely used by the community in their daily lives, for example as food ingredients, industrial material sources, labor resources, fertilizer sources and energy sources. This study aims to cluster livestock potential with data on livestock population in Sidoarjo Regency in 2017 with single linkage, complete linkage and average linkage method and comparing performance of the methods. In this cluster, the data will be grouped into 3 clusters. The results of the three clusters were obtained by sixteen sub-districts in the first cluster with the potential for low livestock and each one in the second and third clusters for single linkage and average linkage. While complete linkage obtained fifteen sub-districts in the first cluster with high potential for livestock, two sub-districts in the second cluster with the potential of medium livestock and one sub-district in the third cluster with the potential for high farm animals. In the comparison of the standard deviation ratio value, the smallest value of 0.222 is obtained by complete linkage, which shows that complete linkage is better than single linkage and average linkage in the case of subgrouping based on Sidoarjo regency livestock types.

KERAGAMAN FENOTIPE DAN GENETIK TIGA VARIETAS KELAPA GENJAH KOPYOR ASAL PATI JAWA TENGAH

2016 ◽  
Vol 21 (1) ◽  
pp. 1 ◽  
Author(s):  
ISMAIL MASKROMO ◽  
ELSJE T. TENDA ◽  
MEITY A. TULALO ◽  
HENGKY NOVARIANTO ◽  
DEWI SUKMA ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Cluster Analysis ◽  
Molecular Biology ◽  
Plant Molecular Biology ◽  
Morphological Diversity ◽  
Local Varieties ◽  
Central Java ◽  
Variety Selection ◽  
Ssr Loci ◽  
Biology Laboratory

<p>ABSTRAK<br />Kelapa Genjah kopyor asal Pati, Jawa Tengah merupakan<br />kekayaaan hayati asli Indonesia dengan nilai ekonomi tinggi. Informasi<br />keragaman genetik kelapa kopyor masih terbatas. Data keragaman<br />morfologi dan genetik diperlukan dalam program pemuliaan kelapa<br />kopyor. Penelitian ini mempelajari keragaman tiga varietas kelapa genjah<br />kopyor asal Pati yang telah dilepas berdasarkan karakter morfologi,<br />kuantitas endosperma, dan keragaman alel marka SSR. Penelitian<br />dilakukan di Pati dan di Laboratorium Plant Molecular Biology,<br />Departemen Agronomi dan Hortikultura, IPB. Evaluasi dilakukan terhadap<br />tiga populasi kelapa Genjah kopyor (hijau, coklat, dan kuning) dengan 30<br />tanaman sampel untuk setiap populasi. Rataan data morfologi digunakan<br />untuk menyusun dendogram. Kuantitas endosperma diamati pada satu<br />buah kelapa kopyor per tanaman yang dievaluasi. Karakteristik<br />endosperma dikelompokkan sesuai kategori yang telah ditetapkan. Untuk<br />setiap populasi, analisis marka dengan lima pasang primer SSR dilakukan<br />pada 10 tanaman sampel. Data yang didapat digunakan untuk menentukan<br />keragaman genetik kelapa Genjah kopyor asal Pati. Hasil pengamatan<br />menunjukkan keragaman morfologis dan alel SSR antar tanaman dalam<br />varietasnya (keragaman intra-varietas) rendah. Sebaliknya, keragaman<br />morfologis dan alel SSR antar varietasnya tinggi. Kuantitas endosperma<br />kelapa Genjah kopyor asal Pati bervariasi antara skor 1–6. Keragaman<br />genetik yang rendah dalam varietas dan tinggi antar ketiga varietas (coklat,<br />hijau, dan kuning) memperkuat pelepasan ketiganya sebagai varietas lokal.<br />Selain itu, keragaman genetik antar tanaman dalam varietas yang rendah<br />mendukung penggunaan ketiga varietas lokal sebagai tetua dalam program<br />perakitan varietas kelapa kopyor unggul baru. Tetua yang dipilih dapat<br />diseleksi intra-varietas berdasarkan persentase buah kopyor per tandan<br />dan skor kuantitas endosperma yang tinggi.<br />Kata kunci: Keragaman morfologis, keragaman intra dan antar varietas,<br />kuantitas endosperma</p><p>ABSTRACT<br />Kopyor dwarf coconuts are mutants from Pati, Central Java having<br />high economic values. However, morphological and genetic diversities of<br />this coconut were still limited. Morphological and genetic diversity data<br />are needed for breeding program. The research objectives were to evaluate<br />intra and inter-specific diversity based on morphology, endosperm<br />quantity, and SSR alleles. Field evaluations were conducted in Pati while<br />laboratory activities were at Plant Molecular Biology Laboratory,<br />Department of Agronomy and Horticulture, IPB. Three populations of<br />kopyor dwarf varieties (brown, green, and yellow) were evaluated. Thirty<br />trees were sampled for each population. The average of morphological<br />data were used to construct cluster analysis. Endosperm quantity was<br />scored (0 – 9) based on a single nut sample. Ten palms were analyzed<br />using five SSR loci for each population and used to determine genetic<br />diversity of populations. Results of observations indicated intra-variety<br />morphological and SSR allele variations among kopyor dwarf was low.<br />However, inter-variety variations were high. The endosperm quantity<br />scores among kopyor dwarf coconut ranged from 1–6. The low intra-<br />variety and high inter-variety variations among the three kopyor dwarf<br />coconut supported their release as different local varieties. Moreover, the<br />low intra-variety phenotypic and genotypic diversities among kopyor<br />brown, green, and yellow dwarf coconut support their use as parents for<br />new and superior kopyor coconut variety development in the future. For<br />such purpose, however, it is necessary to conduct intra-variety selection to<br />identify desirable parents based on high kopyor fruit percentage per bunch<br />and for high kopyor endosperm quantity.<br />Key words: Morphological diversity, intra and inter variety diversities,<br />quantity, endosperm</p>

Isozyme Variation in Broom Snakeweed (Gutierrezia sarothrae)

Weed Science ◽  
1995 ◽  
Vol 43 (1) ◽  
pp. 156-162 ◽  
Author(s):  
Yanglin Hou ◽  
Tracy M. Sterling
Keyword(s):  
Cluster Analysis ◽  
New Mexico ◽  
Genetic Variability ◽  
Gel Electrophoresis ◽  
Isozyme Analysis ◽  
Starch Gel Electrophoresis ◽  
Enzyme Systems ◽  
Starch Gel ◽  
Morphological Differences ◽  
Gutierrezia Sarothrae

Broom snakeweed, a perennial rangeland shrub, is highly variable morphologically and can grow under a broad range of environmental conditions. In this study, isozyme analysis using starch gel electrophoresis was used to quantify genetic variability within and among New Mexico populations of broom snakeweed. Eight separate populations of broom snakeweed and one population of threadleaf snakeweed as a comparison were investigated. of the 10 enzyme systems examined, 16 loci were identified in eight populations and two species. Eleven loci were monomorphic in eight populations and two species and five loci were polymorphic in at least one population or species. Genetic variability was large in broom and threadleaf snakeweed populations as determined by isozyme analysis. Genetic variability among broom snakeweed populations was greater than that within populations for the five polymorphic loci. Cluster analysis of genetic distance and identity for the eight populations and two species characterized two major groups. Within broom snakeweed, cluster analysis characterized five groups. The two species shared most common alleles. The genetic variation identified in this research may account for the morphological differences and broad geographical distribution of broom snakeweed.

Evaluation of morphological diversity of field pea [Pisum sativum subsp.arvense (L.)] germplasm under sub-tropical climate of Manipur

2016 ◽  
Author(s):  
S. Bhuvaneswari ◽  
Susheel Kumar Sharma ◽  
P. Punitha ◽  
K. S. Shashidhar ◽  
K. L. Naveenkumar ◽  
...  
Keyword(s):  
Seed Yield ◽  
Quantitative Traits ◽  
Principal Component ◽  
Morphological Diversity ◽  
Field Pea ◽  
Plant Seed ◽  
Diverse Field ◽  
Early Maturing ◽  
Linkage Method ◽  
Practical Field

An investigation was carried out to evaluate 51 diverse field pea genotypes at Langol Research farm, ICAR, RC, NEH region, Manipur centre for nine yield related quantitative traits and four morphological qualitative traits for practical field pea improvement in Manipur. The combined analysis of variance of genotypes for all the nine traits was found to be significant. The amount of variability in one variable as a linear function of another variable was also measured through phenotypic and genotypic correlation among nine quantitative traits. The pod number per plant, seed number per pod and 100 seed weight showed significant positive correlation with seed yield per plant both at phenotypic and genotypic levels. Multivariate analysis using principal component analysis (PCA) indicated that three principal components (PCs) accounted for > 75% of the total variation. The genotypes were grouped into seven clusters using distance based Agglomerative “Average linkage” method. Three genotypes IPF-5-19, EC-8495, HUDP-15 belonging to cluster II and DDR-30, early maturing variety belonging to Cluster VI were found promising in terms of seed yield for the region.

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