scholarly journals 1P289 Helical parameters of alpha-helices in proteins

2005 ◽  
Vol 45 (supplement) ◽  
pp. S104
Author(s):  
Purejav Eahkbayar ◽  
M. Osaki ◽  
N. Matsushima
Author(s):  
S. Trachtenberg ◽  
D. J. DeRosier

The bacterial cell is propelled through the liquid environment by means of one or more rotating flagella. The bacterial flagellum is composed of a basal body (rotary motor), hook (universal coupler), and filament (propellor). The filament is a rigid helical assembly of only one protein species — flagellin. The filament can adopt different morphologies and change, reversibly, its helical parameters (pitch and hand) as a function of mechanical stress and chemical changes (pH, ionic strength) in the environment.


2021 ◽  
Vol 368 (3) ◽  
Author(s):  
Dongxue Dong ◽  
Xuelian Wang ◽  
Tian Deng ◽  
Zhe Ning ◽  
Xiaopeng Tian ◽  
...  

ABSTRACT Dextranase specifically hydrolyzes dextran and is used to produce functional isomalto-saccharide prebiotics. Moreover, dextranase is used as an additive in mouthwash to remove dental plaque. We cloned and expressed the dextranase gene of the marine bacterium Bacillus aquimaris S5. The length of the BaDex gene was 1788 bp, encoding 573 amino acids. Using bioinformatics to predict and analyze the amino acid sequence of BaDex, we found the isoelectric point and instability coefficient to be 4.55 and 29.22, respectively. The average hydrophilicity (GRAVY) was −0.662. The secondary structure of BaDex consisted of 145 alpha helices, accounting for 25.31% of the protein; 126 extended strands, accounting for 21.99%; and 282 random coils, accounting for 49.21%. The 3D structure of the BaDex protein was predicted and simulated using SWISS-MODEL, and BaDex was classified as a Glycoside Hydrolase Family 66 protein. The optimal temperature and pH for BaDex activity were 40°C and 6.0, respectively. The hydrolysates had excellent antioxidant activity, and 8 U/mL of BaDex could remove 80% of dental plaque in MBRC experiment. This recombinant protein thus has great promise for applications in the food and pharmaceutical industries.


1977 ◽  
Vol 163 (1) ◽  
pp. 45-57 ◽  
Author(s):  
A K Dunker ◽  
D J Zaleske

The stereochemical constraints originally used to construct two- and three-stranded alpha-helical coiled-coils were generalized for aggregates of alpha-helices containing from 4 to 14 alpha-helices in tubular bundles. Certain features of bacteriorhodopsin show excellent correlations with these stereochemical constraints.


Science ◽  
1988 ◽  
Vol 240 (4859) ◽  
pp. 1648-1652 ◽  
Author(s):  
J. Richardson ◽  
D. Richardson
Keyword(s):  

2010 ◽  
Vol 107 (26) ◽  
pp. 11686-11691 ◽  
Author(s):  
R. S. Harrison ◽  
N. E. Shepherd ◽  
H. N. Hoang ◽  
G. Ruiz-Gomez ◽  
T. A. Hill ◽  
...  

Author(s):  
Jyothi Kanagaraj

Phospholipase A2 is enzyme that hydrolyses phospholipids at sn-2 position. This class of enzymes are significant due to their ability to cleave membrane phospholipids and hence causing inflammation. The PLA2 enzymes present in Rattus norvegicus is extensively studied to predict its properties. The Protparam analysis was performed to predict the physical properties like number of amino acids, Theoretical pH, stability index value, aliphatic index value and GRAVY value. The SOPMA analysis predicted its structural properties like the number of alpha-helices and beta-strands. Hence the focus of the present study was to perform a preliminary in silico analysis to identify the PLA2 protein sequences in the genome of Rattus norvegicus.


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