Genetic structure of three marine fishes from the Gulf of Pagasitikos (Greece) based on allozymes, RAPD, and mtDNA RFLP markers

Biologia ◽  
2009 ◽  
Vol 64 (5) ◽  
Author(s):  
Apostolos Apostolidis ◽  
Katerina Moutou ◽  
Costas Stamatis ◽  
Zissis Mamuris
Keyword(s):  
Genetic Structure ◽  
Demersal Fish ◽  
Management Plan ◽  
Marine Fishes ◽  
Molecular Techniques ◽  
Population Subdivision ◽  
Rflp Markers ◽  
Genetic Population ◽  
Essential Information ◽  
Mean Values

AbstractIn the present work we used three molecular techniques (allozymes, RAPDs and mtDNA RFLPs) in order to study the genetic structure of three commercial marine species (Mullus surmuletus, Mullus barbatus, and Pagellus erythrinus). Each species was sampled from three locations within the Gulf of Pagasitikos, Greece and from two neighbouring locations outside the Gulf (Trikeri and Alonissos). Values of genetic heterozygosity and nucleotide diversity for all populations studied were similar or above the mean values observed in marine fishes. None of the three types of molecular markers used revealed diagnostic patterns, which could allow the allocation of individuals to one of the populations. The analyses revealed that the three populations within Pagasitikos were homogenous representing thus a panmictic stock. However, there were evidences of genetic population subdivision between localities from inside and outside of the Pagasitikos Gulf. The results provide essential information for the design of a sustainable management plan of the Gulf of Pagasitikos and its demersal fish resources.

HEAVY METALS IN WATER, SEDIMENTS AND MARINE FISHES FROM BULGARIAN BLACK SEA

2017 ◽  
Author(s):  
Katya Peycheva ◽  
Katya Peycheva ◽  
Mona Stancheva ◽  
Mona Stancheva ◽  
Stanislava Georgieva ◽  
...  
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Black Sea ◽  
Fish Species ◽  
Distribution Patterns ◽  
Marine Fishes ◽  
Marine Water ◽  
Mean Values ◽  
Sprattus Sprattus ◽  
Cu And Zn

In this study, the ecosystem marine water-sediment-biota was investigated and the pollution was assessed. The concentrations of eight elements were determined in marine water, sediments and four fish species collected from Black Sea (Varna), Bulgaria during 2013. Marine water recorded the highest concentrations of Zn (15-22 μg/L), As (1.1–1.2 μg/L) and Pb (0.7-0.8 μg/L) while Zn (31-52 μg/g), Pb (21-29 μg/g) and Cu (20-34 μg/g) and show the highest concentrations in sediments. Water and sediments showed similar spatial distribution patterns for the highest mean values of the different metals. In the analysed fish species, the highest concentration of the metals Cu and Zn were found in Trachurus Mediterrneus (0.42 mg/kg w.w) and in Sprattus Sprattus (12.7 mg/kg w.w), respectively while the heavy metals As and Hg were found with maximum values in Pseta Maxima (3.99 mg/kg w.w and 0.08 mg/kg w.w respectively). The results from this study were compared with our data for a previous period (2004-2006) and they show decrease in the levels of heavy metal.

scholarly journals Genetic population structure of the monogenean parasite Gyrodactylus thymalli and its host European grayling (Thymallus thymallus) in a large Norwegian lake

Hydrobiologia ◽  
2020 ◽  
Author(s):  
Ruben Alexander Pettersen ◽  
Claudia Junge ◽  
Kjartan Østbye ◽  
Tor Atle Mo ◽  
Leif Asbjørn Vøllestad
Keyword(s):  
Genetic Structure ◽  
Evolutionary Biology ◽  
Isolation By Distance ◽  
Genetic Structuring ◽  
Thymallus Thymallus ◽  
Homing Behavior ◽  
Genetic Population ◽  
Monogenean Parasite ◽  
European Grayling ◽  
Genetic Clusters

Abstract Understanding how populations are structured in space and time is a central question in evolutionary biology. Parasites and their hosts are assumed to evolve together, however, detailed understanding of mechanisms leading to genetic structuring of parasites and their hosts are lacking. As a parasite depends on its host, studying the genetic structure of both parasite and host can reveal important insights into these mechanisms. Here, genetic structure of the monogenean parasite Gyrodactylus thymalli and its host the European grayling (Thymallus thymallus) was investigated in 10 tributaries draining into the large Lake Mjøsa in Norway. The population genetic structure of spawning grayling was studied using microsatellite genotyping, while G. thymalli was studied by sequencing a mitochondrial DNA gene (dehydrogenase subunit 5). Two main genetic clusters were revealed in grayling, one cluster comprising grayling from the largest spawning population, while the remaining tributaries formed the second cluster. For both taxa, some genetic differentiation was observed among tributaries, but there was no clear isolation-by-distance signature. The structuring was stronger for the host than for the parasite. These results imply that moderate to high levels of gene flow occur among the sub-populations of both taxa. The high parasite exchange among tributaries could result from a lack of strong homing behavior in grayling as well as interactions among individual fish outside of the spawning season, leading to frequent mixing of both host and parasite.

scholarly journals Genetic Structure of Rhynchosporium secalis in Australia

1999 ◽  
Vol 89 (8) ◽  
pp. 639-645 ◽  
Author(s):  
B. A. McDonald ◽  
J. Zhan ◽  
J. J. Burdon
Keyword(s):  
Genetic Structure ◽  
Gene Diversity ◽  
Sampling Site ◽  
Geographic Distance ◽  
South Australia ◽  
Rflp Markers ◽  
Rhynchosporium Secalis ◽  
Fungal Isolates ◽  
Fungal Populations ◽  
Average Gene

Restriction fragment length polymorphism (RFLP) markers were used to determine the genetic structure of Australian field populations of the barley scald pathogen Rhynchosporium secalis. Fungal isolates were collected by hierarchical sampling from five naturally infected barley fields in different geographic locations during a single growing season. Genetic variation was high in Australian R. secalis populations. Among the 265 fungal isolates analyzed, 214 distinct genotypes were identified. Average genotype diversity within a field population was 65% of its theoretical maximum. Nei's average gene diversity across seven RFLP loci was 0.54. The majority (76%) of gene diversity was distributed within sampling site areas measuring ≈1 m2; 19% of gene diversity was distributed among sampling sites within fields; and 5% of gene diversity was distributed among fields. Fungal populations from different locations differed significantly both in allele frequencies and genotype diversities. The degree of genetic differentiation was significantly correlated with geographic distance between populations. Our results suggest that the R. secalis population in Western Australia has a different genetic structure than populations in Victoria and South Australia.

scholarly journals Short Communication: Genetic structure of Longtail Tuna Thunnus tonggol (Bleeker, 1851) in Java Sea, Indonesia

2020 ◽  
Vol 21 (8) ◽  
Author(s):  
M. DANIE AL MALIK ◽  
NI PUTU DIAN PERTIWI ◽  
ANDRIANUS SEMBIRING ◽  
NI LUH ASTRIA YUSMALINDA ◽  
ENEX YUNIARTI NINGSIH ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Short Communication ◽  
Management Plan ◽  
P Value ◽  
High Genetic Diversity ◽  
Population Structure Analysis ◽  
Fisheries Sustainability ◽  
Java Sea ◽  
Longtail Tuna

Abstract. Al Malik MD, Pertiwi NPD, Sembiring A, Yusmalinda NLA, Ningsing EY, Astarini IA. 2020. Short Communication: Genetic structure of Longtail Tuna Thunnus tonggol (Bleeker, 1851) in Java Sea, Indonesia. Biodiversitas 21: 3637-3643. Thunnus tonggol (Longtail Tuna) is an economically important fish found in Indonesia waters, however, the information regarding this fish is lacking. Known to be a neritic fish and found in shallow water, Java Sea is one of the ideal habitats for T. tonggol species. Due to high fishing rates activities in Java Sea, a better management plan to ensure the conservation and fisheries sustainability around this area is needed, especially to protect T. tonggol population. In order to complete the Indonesian tuna data, we aim to study the diversity and genetic structure of T. tonggol in Java Sea at three different locations; i.e. Semarang, Banjarmasin, and Jakarta. In this study, population genetic methods with the marker of mitochondrial DNA (mtDNA) control region were used in population structure analysis. A total of 115 specimens were collected from the fish market around the area of study locations and amplified using polymerase chain reaction (PCR) and sequenced using Sanger methods. The result showed genetic diversity (Hd) value of 0.99366, and nucleotide diversity (π) value of 0.01906. Both of these values indicated high genetic diversity. Population analyses using Analysis of Molecular Variance (AMOVA) showed nonsignificant differences between the three populations of study (mixing population), with the ΦST value of 0,00375 (p-value > 0.05). Based on this result, the fisheries management for T. tonggol in Java Sea needs to be managed as one single population management.

scholarly journals Whole-genome SNP analysis elucidates the genetic population structure and diversity of Acrocomia species

2020 ◽  
Author(s):  
Brenda G. Díaz ◽  
Maria I. Zucchi ◽  
Alessandro. Alves-Pereira ◽  
Caléo P. de Almeida ◽  
Aline C. L. Moraes ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Genetic Structure ◽  
Genetic Relationships ◽  
Geographical Area ◽  
Taxonomic Classification ◽  
Genomic Diversity ◽  
Productive Capacity ◽  
Snp Analysis ◽  
Genetic Population

AbstractAcrocomia (Arecaceae) is a genus widely distributed in tropical and subtropical America that has been achieving economic interest due to the great potential of oil production of some of its species. In particular A. aculeata, due to its vocation to supply oil with the same productive capacity as the oil palm even in areas with water deficit. Although eight species are recognized in the genus, the taxonomic classification based on morphology and geographic distribution is still controversial. Knowledge about the genetic diversity and population structure of the species is limited, which has limited the understanding of the genetic relationships and the orientation of management, conservation, and genetic improvement activities of species of the genus. In the present study, we analyzed the genomic diversity and population structure of seven species of Acrocomia including 117 samples of A. aculeata covering a wide geographical area of occurrence, using single nucleotide Polymorphism (SNP) markers originated from Genotyping By Sequencing (GBS). The genetic structure of the Acrocomia species were partially congruent with the current taxonomic classification based on morphological characters, recovering the separation of the species A. aculeata, A. totai, A. crispa and A. intumescens as distinct taxonomic groups. However, the species A. media was attributed to the cluster of A. aculeata while A. hassleri and A. glauscescens were grouped together with A. totai. The species that showed the highest and lowest genetic diversity were A. totai and A. media, respectively. When analyzed separately, the species A. aculeata showed a strong genetic structure, forming two genetic groups, the first represented mainly by genotypes from Brazil and the second by accessions from Central and North American countries. Greater genetic diversity was found in Brazil when compared to the other countries. Our results on the genetic diversity of the genus are unprecedented, as is also establishes new insights on the genomic relationships between Acrocomia species. It is also the first study to provide a more global view of the genomic diversity of A. aculeata. We also highlight the applicability of genomic data as a reference for future studies on genetic diversity, taxonomy, evolution and phylogeny of the Acrocomia genus, as well as to support strategies for the conservation, exploration and breeding of Acrocomia species and in particular A. aculeata.

Genetic diversity and population structure of Tarek (Alburnus tarichi), an endemic species to the Lake Van basin, Turkey

2021 ◽  
Vol 34 ◽  
pp. 3
Author(s):  
Yılmaz Çiftci ◽  
Oğuzhan Eroğlu ◽  
Şirin Firidin ◽  
Hacı Savaş ◽  
Yusuf Bektaş
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Genetic Relationships ◽  
Significance Test ◽  
Management Plan ◽  
Lake Van ◽  
Essential Information ◽  
Low Level ◽  
Lake Van Basin ◽  
Sustainable Fishery

In this study, the genetic relationships of 804 tarek (Alburnus tarichi) samples from a total of 18 populations, including the potamodromus and resident individuals from Lake Van basin in eastern Turkey, were studied by using nine microsatellite loci. A total of 93 alleles was detected, and the average number of alleles per locus was 10.3 ± 3.39. The mean estimated observed and expected heterozygosity were 0.340 ± 0.016 and 0.362 ± 0.015, respectively, which indicated a low level of polymorphism. After Bonferroni correction (P < 0.0027), the multi-locus test applied to each population revealed that 12 out of 18 populations were in Hardy-Weinberg equilibrium (HWE) (P = 0.0120–0.9981). Analysis of molecular variance (AMOVA) showed more than 76% genetic variability within individuals and 19% among populations, which was significantly higher than zero (FST = 0.19), and furthermore, a low level of genetic variation was observed among individuals within populations (4.84%: FIS = 0.06). Bayesian clustering analysis indicated that the total genetic variation grouped into 3 clusters. Additionally, the significance test results revealed that 11 of the 18 populations are threatened with extinction due to recent bottleneck events.We conclude that the tarek populations from the Lake Van basin can be classified into distinct genetic groups, based on microsatellite information. In addition, our results provide essential information for the development of a management plan that conserves the tarek's genetic diversity and achieves a sustainable fishery.

A Comparative Study Between Efficacy Of Esmolol And Lignocaine For Attenuating Haemodynamics Response Due To Laryngoscopy And Endotracheal Intubation

1970 ◽  
Vol 5 (1) ◽  
pp. 25-28 ◽  
Author(s):  
M Begum ◽  
P Akter ◽  
MM Hossain ◽  
SMA Alim ◽  
UHS Khatun ◽  
...  
Keyword(s):  
Blood Pressure ◽  
Heart Rate ◽  
Endotracheal Intubation ◽  
Anaesthetic Management ◽  
Management Plan ◽  
Mean Blood Pressure ◽  
Rate Pressure Product ◽  
Plasma Norepinephrine ◽  
Mean Values ◽  
The Mean

Haemodynamic stability is an integral and essential goal of any anaesthetic management plan. Laryngoscopy and intubation can cause striking changes in haemodynamics. Increase in blood pressure and heart rate occurs most commonly from reflex sympathetic and vagal discharge in response to laryngotracheal stimulation, which in turn leads to increased plasma norepinephrine concentration. This study was designed to compare efficacy of esmolol and lignocaine for attenuating haemodynamics response due to laryngoscopy and endotracheal intubation. The aim of this study was to compare the effects of Esmolol with that of Lignocaine to attenuate the detrimental rise in heart rate and blood pressure during laryngoscopy and tracheal intubation. One hundred and twenty adult patients randomized into group-L and group-E, were received lignocaine 1.5 mg/kg and Esmolol 1.5 mg/kg I.V. respectively. Heart rate and blood pressure in each minutes for the 10 minutes after intubation was recorded. Time span around intubation up to 4 minutes has been looked specifically to isolate the effect of the study drugs at the time of intubation. For statistical analysis Student's 't' test was used for comparing means of quantitative data and chi-square test was used for qualitative data. Difference was considered statistically significant if p<0.05. The mean heart rate, systolic, diastolic, and mean blood pressure, and rate-pressure product before starting anesthesia were similar in group-L (Lignocaine group) and in group-E (Esmolol group) (p>0.05). The mean values of heart rate, systolic, diastolic, and mean blood pressure, and rate-pressure product at 2, 3 and 4 minutes after intubation were significantly lower in group-E than group-L (p<0.05). In conclusion, esmolol 1.5 mg/kg is superior to lignocaine (1.5 mg/kg) for attenuation of haemodynamic response to laryngoscopy and endotracheal intubation. Key words: Haemodynamics; heart rate; intubation; esmolol; lignocaine DOI: 10.3329/fmcj.v5i1.6810Faridpur Med. Coll. J. 2010;5(1):25-28

scholarly journals Genetic population structure of the round whitefish (Prosopium cylindraceum) in North America: multiple markers reveal glacial refugia and regional subdivision

2018 ◽  
Vol 75 (6) ◽  
pp. 836-849 ◽  
Author(s):  
Thomas D. Morgan ◽  
Carly F. Graham ◽  
Andrew G. McArthur ◽  
Amogelang R. Raphenya ◽  
Douglas R. Boreham ◽  
...  
Keyword(s):  
Population Structure ◽  
North America ◽  
Great Lakes ◽  
Lake Ontario ◽  
Glacial Refugia ◽  
Lake Huron ◽  
Genetic Population Structure ◽  
Population Subdivision ◽  
Source Population ◽  
Genetic Population

Round whitefish (Prosopium cylindraceum) have a broad, disjunct range across northern North America and Eurasia, and little is known about their genetic population structure. We performed genetic analyses of round whitefish from 17 sites across its range using nine microsatellites, two mitochondrial DNA (mtDNA) loci, and 4918 to 8835 single-nucleotide polymorphism (SNP) loci. Our analyses identified deep phylogenetic division between eastern and western portions of the range, likely indicative of origins from at least two separate Pleistocene glacial refugia. Regionally, microsatellites and SNPs identified congruent patterns in subdivision, and population structure was consistent with expectations based on hydrologic connectivity. Within the Laurentian Great Lakes, Lake Huron and Lake Ontario were identified as key areas of interest. Lake Huron appears to be a contemporary source population for several other Great Lakes, and Lake Ontario contains a genetically discrete group of round whitefish. In all cases, multiple genetic markers yielded similar patterns, but SNPs offered substantially enhanced resolution. We conclude that round whitefish have population subdivision on several scales important for understanding their evolutionary history and conservation planning.

scholarly journals Genetic Structure and Interpopulation Differentiation of Eight Pinus sylvestris L. Populations in the Eastern European Plain

2019 ◽  
Vol 5 (12) ◽  
pp. 89-97
Author(s):  
Ya. Sboeva ◽  
S. Boronnikova
Keyword(s):  
Genetic Structure ◽  
Pinus Sylvestris ◽  
Genetic Distance ◽  
Total Sample ◽  
Russian Plain ◽  
Population Subdivision ◽  
Gene Pools ◽  
Eastern European ◽  
The Common ◽  
Expected Proportion

A study of the genetic structure and differentiation of eight populations of Pinus sylvestris L. on the Russian Plain showed that the populations of PsI and PsII (D=0.066) are located at the smallest genetic distance, and between the populations of PsI and PsIV (D=0.308) at the greatest genetic distance. On the dendrogram, the studied populations formed four clusters: PsI and PsII; PsIII and PsIV; PsV and PsVI; PsVII and PsVIII. Analysis of the genetic structure of eight populations of P. sylvestris showed that the expected proportion of heterozygous genotypes (HT) for the total sample was 0.320, the expected proportion of heterozygous genotypes in a single population for all loci (HS) was 0.170, therefore, the population subdivision (GST) was high and amounted to 0.468. The studied populations are highly differentiated, since the interpopulation component accounts for 46.8% of the genetic diversity. In all studied populations, the indicator h has values less than 0.3. An analysis of the fraction of rare alleles showed that the genetic structure is less balanced in the populations PsIII (h=0.254) and PsIV (h=0.273). The most balanced genetic structure in the populations of PsVII (h=0.112) and PsVIII (h=0.127). Data on the genetic structure and differentiation of the common pine populations should be taken into account when developing recommendations for preserving their gene pools.

scholarly journals Strong genetic structure and limited connectivity among populations of Clark's Anemonefish (Amphiprion clarkii) in the centre of marine biodiversity

2021 ◽  
Author(s):  
Hugo Ducret ◽  
Janne Timm ◽  
Melina Rodriguez Moreno ◽  
Filip Huyghe ◽  
Marc Kochzius
Keyword(s):  
Coral Reef ◽  
Genetic Structure ◽  
Marine Protected Area ◽  
Mitochondrial Control Region ◽  
Marine Biodiversity ◽  
Anthropogenic Pressure ◽  
Genetic Population ◽  
Limited Dispersal ◽  
Significant Genetic Structure ◽  
Amphiprion Clarkii

Populations of anemonefish species often show signs of local isolation due limited dispersal potential and oceanographic conditions. Additionally, anthropogenic pressure, such as overharvesting and coral reef exploitation causes reduced population size, eventually leading to local extinction. The understanding of the genetic population structure, as well as the influence of both historical and current connectivity, is required to design effective marine protected area (MPA) networks. In this study, the genetic structure of Clark's Anemonefish (Amphiprion clarkii) populations of the Indo-Malay Archipelago (IMA) is assessed through mitochondrial control region (mtCR) sequences and nuclear microsatellites. Results provided evidence of a significant genetic structure (mtCR: Phist = 0.42039, Phict = 0.63852; microsatellites: Fst = 0.01449, Fct = 0.05199). Genetic breaks were identified among Western (Padang Karimunjawa), Central (Sulawesi, Borneo, Bali, Komodo, Timor), and Eastern (Biak) IMA populations, which matches with patterns obtained for congeneric and other coral reef taxa. Due to the restricted connectivity among these three regions, it is suggested to consider them as separate management areas in the design of MPA networks.

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