Performance improvement of influenza A/H1N1pdm09 complete genome massive sequencing by setting a cycle threshold cut-off in monoplex PCR

2016 ◽  
Author(s):  
Ivan Sanz
Keyword(s):  
Performance Improvement ◽  
Complete Genome ◽  
Influenza A ◽  
Cycle Threshold ◽  
Massive Sequencing

scholarly journals Complete Genome Sequences of Influenza A/H1N1 Strains Isolated from Patients during the 2013-2014 Epidemic Season in Finland

2015 ◽  
Vol 3 (2) ◽  
Author(s):  
Petri Jalovaara ◽  
Polina Mishel ◽  
Hannimari Kallio-Kokko ◽  
Miia Valkonen ◽  
Anu Kantele ◽  
...  
Keyword(s):  
Complete Genome ◽  
Influenza A ◽  
Genome Sequences ◽  
Epidemic Season ◽  
Influenza A H1n1

scholarly journals Genetic analysis of the complete genome of influenza A (H1N1) pdm09 during the first wave of the pandemic season in Indonesia

2017 ◽  
Vol 6 (3) ◽  
pp. 476 ◽  
Author(s):  
Hana Apsari Pawestri ◽  
Ni K. Susilarini ◽  
Kartika D. Puspa ◽  
Hartanti D. Ikawati ◽  
Kindi Adam ◽  
...  
Keyword(s):  
Genetic Analysis ◽  
Complete Genome ◽  
Influenza A ◽  
Influenza A H1n1

scholarly journals Genome Sequence of a Novel H14N7 Subtype Influenza A Virus Isolated from a Blue-Winged Teal ( Anas discors ) Harvested in Texas, USA

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Andrew M. Ramey ◽  
Andrew B. Reeves ◽  
Rebecca L. Poulson ◽  
Deborah L. Carter ◽  
Nicholas Davis-Fields ◽  
...  
Keyword(s):  
Influenza A Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Influenza A ◽  
Wild Bird ◽  
New World ◽  
Viral Evolution ◽  
Anas Discors

We report here the complete genome sequence of a novel H14N7 subtype influenza A virus (IAV) isolated from a blue-winged teal ( Anas discors ) harvested in Texas, USA. The genomic characteristics of this IAV strain with a previously undetected subtype combination suggest recent viral evolution within the New World wild-bird IAV reservoir.

scholarly journals Complete Genome Sequences of the First Reported California H16 Influenza A Viruses

2014 ◽  
Vol 2 (2) ◽  
Author(s):  
L. L. Lindsay ◽  
M. Plancarte ◽  
M. Brenn-White ◽  
W. M. Boyce
Keyword(s):  
Complete Genome ◽  
Influenza A ◽  
Influenza A Viruses ◽  
Genome Sequences

Complete genome sequence of a novel influenza A H1N2 virus circulating in swine from Central Bajio region, Mexico

2017 ◽  
Vol 64 (6) ◽  
pp. 2083-2092 ◽  
Author(s):  
J. I. Sánchez-Betancourt ◽  
J. B. Cervantes-Torres ◽  
M. Saavedra-Montañez ◽  
R. A. Segura-Velázquez
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Influenza A ◽  
H1n2 Virus ◽  
Novel Influenza A

scholarly journals Complete Genome Sequencing of Two Equine Influenza A(H3N8) Virus Strains Isolated in Kazakhstan

2018 ◽  
Vol 6 (26) ◽  
Author(s):  
Yerbol Burashev ◽  
Vitaliy Strochkov ◽  
Kulyaisan Sultankulova ◽  
Mukhit Orynbayev ◽  
Abylay Sansyzbay ◽  
...  
Keyword(s):  
Influenza Virus ◽  
Genome Sequencing ◽  
Complete Genome ◽  
Influenza A ◽  
Equine Influenza Virus ◽  
Equine Influenza ◽  
Complete Genome Sequencing ◽  
H3n8 Virus ◽  
Virus Strains

Here, we report the complete genome sequencing of strains A/equine/Kostanay/9/2012(H3N8) and A/equine/LKZ/9/2012(H3N8) of the equine influenza virus belonging to Florida sublineage, clade 2. The strains were isolated in 2012 in the northern and southern regions of Kazakhstan, respectively.

scholarly journals The evolution of human influenza A viruses from 1999 to 2006 - a complete genome study

2008 ◽  
Vol 5 (1) ◽  
pp. 40 ◽  
Author(s):  
Karoline Bragstad ◽  
Lars P Nielsen ◽  
Anders Fomsgaard
Keyword(s):  
Complete Genome ◽  
Influenza A ◽  
Human Influenza ◽  
Influenza A Viruses ◽  
Genome Study

scholarly journals Coding-Complete Genome Sequences of Six Influenza Type A Strains Circulating in Lithuania in the 2009–2010 Epidemic Season

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Lukasz Rabalski ◽  
Boguslaw Szewczyk ◽  
Kęstutis Zagminas ◽  
Algirdas Griskevicius ◽  
Krzysztof Lepek
Keyword(s):  
Complete Genome ◽  
Influenza A ◽  
Reference Strain ◽  
Type A ◽  
Influenza Surveillance ◽  
Genome Sequences ◽  
Epidemic Season ◽  
Link Type ◽  
Influenza A H1n1 ◽  
Genes Encoding

ABSTRACT Here, we report the coding-complete genome sequences of six influenza A(H1N1) strains that were detected in Vilnius, Lithuania, among patients exhibiting influenza-like symptoms during the 2009–2010 epidemic season, within national influenza surveillance. Several mutations were found in genes encoding hemagglutinin and neuraminidase, in comparison with the A/California/07/2009 reference strain (GenBank accession numbers NC_026433 and NC_026434).

scholarly journals Complete Genome Sequence of the Highly Pathogenic Strain A/Domestic Goose/Pavlodar/1/05 (H5N1) of the Avian Influenza Virus, Isolated in Kazakhstan in 2005

2020 ◽  
Vol 9 (10) ◽  
Author(s):  
Aisha Issabek ◽  
Yerbol Burashev ◽  
Olga Chervyakova ◽  
Mukhit Orynbayev ◽  
Zhailaubay Kydyrbayev ◽  
...  
Keyword(s):  
Influenza Virus ◽  
Avian Influenza ◽  
Influenza A Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Influenza A ◽  
Pathogenic Strain ◽  
Highly Pathogenic ◽  
Avian Influenza A Virus

Here, we present the complete genome sequence of a highly pathogenic strain of avian influenza A virus/domestic goose/Pavlodar/1/05 (H5N1) (GS/1/05), which belongs to clade 2.2. This strain of the influenza virus was isolated in northern Kazakhstan in 2005.

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