A digital pathology-based mass spectrometry approach to biomarker discovery in formalin-fixed paraffin-embedded colorectal cancer tissue

Formalin Fixed Paraffin ◽

Abstract A19: A qPCR assay, OncoScore Colon, predicts resistance to cetuximab in formalin-fixed, paraffin-embedded colorectal cancer tissue independent of KRAS status

Clinical Cancer Research ◽

10.1158/1078-0432.mechres-a19 ◽

2012 ◽

Vol 18 (10 Supplement) ◽

pp. A19-A19

Author(s):

Sean Eddy ◽

Byung-In Lee ◽

Teresa Macarulla ◽

Josep Tabernero ◽

Joseph Monforte ◽

...

Keyword(s):

Colorectal Cancer ◽

Qpcr Assay ◽

Cancer Tissue ◽

Formalin Fixed Paraffin ◽

Kras Status ◽

Proteomic analysis of formalin-fixed paraffin-embedded colorectal cancer tissue using tandem mass tag protein labeling

Molecular BioSystems ◽

10.1039/c3mb70177h ◽

2013 ◽

Vol 9 (11) ◽

pp. 2686 ◽

Cited By ~ 14

Author(s):

Evelyne Maes ◽

Dirk Valkenborg ◽

Inge Mertens ◽

Valérie Broeckx ◽

Geert Baggerman ◽

...

Keyword(s):

Colorectal Cancer ◽

Proteomic Analysis ◽

Protein Labeling ◽

Cancer Tissue ◽

Tandem Mass ◽

Tandem Mass Tag ◽

Formalin Fixed Paraffin ◽

Genome-wide DNA methylation analysis of formalin-fixed paraffin embedded colorectal cancer tissue

Genes Chromosomes and Cancer ◽

10.1002/gcc.22164 ◽

2014 ◽

Vol 53 (7) ◽

pp. 537-548 ◽

Cited By ~ 35

Author(s):

Troy D. Dumenil ◽

Leesa F. Wockner ◽

Mark Bettington ◽

Diane M. McKeone ◽

Kerenaftali Klein ◽

...

Keyword(s):

Colorectal Cancer ◽

Dna Methylation ◽

Cancer Tissue ◽

Methylation Analysis ◽

Genome Wide ◽

Formalin Fixed Paraffin ◽

Dna Methylation Analysis ◽

Matrix-comparative genomic hybridization from multicenter formalin-fixed paraffin-embedded colorectal cancer tissue blocks

BMC Cancer ◽

10.1186/1471-2407-7-58 ◽

2007 ◽

Vol 7 (1) ◽

Cited By ~ 15

Author(s):

Heiko Fensterer ◽

◽

Bernhard Radlwimmer ◽

Jörn Sträter ◽

Malte Buchholz ◽

...

Keyword(s):

Colorectal Cancer ◽

Comparative Genomic Hybridization ◽

Comparative Genomic ◽

Cancer Tissue ◽

Genomic Hybridization ◽

Formalin Fixed Paraffin ◽

Gene expression analysis of normal and colorectal cancer tissue samples from fresh frozen and matched formalin-fixed, paraffin-embedded (FFPE) specimens after manual and automated RNA isolation

Methods ◽

10.1016/j.ymeth.2012.09.011 ◽

2013 ◽

Vol 59 (1) ◽

pp. S16-S19 ◽

Cited By ~ 27

Author(s):

Alexandra Kalmar ◽

Barnabás Wichmann ◽

Orsolya Galamb ◽

Sándor Spisák ◽

Kinga Tóth ◽

...

Keyword(s):

Gene Expression ◽

Colorectal Cancer ◽

Gene Expression Analysis ◽

Rna Isolation ◽

Cancer Tissue ◽

Tissue Samples ◽

Formalin Fixed Paraffin ◽

Fresh Frozen ◽

Correction to: Sample preparation of formalin-fixed paraffin-embedded tissue sections for MALDI-mass spectrometry imaging

Analytical and Bioanalytical Chemistry ◽

10.1007/s00216-021-03276-w ◽

2021 ◽

Author(s):

Juliane Hermann ◽

Heidi Noels ◽

Wendy Theelen ◽

Michaela Lellig ◽

Setareh Orth-Alampour ◽

...

Keyword(s):

Mass Spectrometry ◽

Sample Preparation ◽

Mass Spectrometry Imaging ◽

Maldi Mass Spectrometry ◽

Tissue Sections ◽

Formalin Fixed Paraffin ◽

Formalin Fixed ◽

Maldi Mass Spectrometry Imaging

Classification of Inflammatory Bowel Disease from Formalin‐Fixed, Paraffin‐Embedded Tissue Biopsies via Imaging Mass Spectrometry

PROTEOMICS - CLINICAL APPLICATIONS ◽

10.1002/prca.201900131 ◽

2020 ◽

Vol 14 (6) ◽

pp. 1900131

Author(s):

Oliver Klein ◽

Franz Fogt ◽

Stephan Hollerbach ◽

Grit Nebrich ◽

Tobias Boskamp ◽

...

Keyword(s):

Mass Spectrometry ◽

Inflammatory Bowel Disease ◽

Bowel Disease ◽

Imaging Mass Spectrometry ◽

Formalin Fixed Paraffin ◽

Inflammatory Bowel ◽

MALDI Imaging Mass Spectrometry of N-glycans and Tryptic Peptides from the Same Formalin-Fixed, Paraffin-Embedded Tissue Section

Methods in Molecular Biology - Tissue Proteomics ◽

10.1007/7651_2017_81 ◽

2017 ◽

pp. 225-241 ◽

Cited By ~ 15

Author(s):

Peggi M. Angel ◽

Anand Mehta ◽

Kim Norris-Caneda ◽

Richard R. Drake

Keyword(s):

Mass Spectrometry ◽

Tissue Section ◽

Imaging Mass Spectrometry ◽

Maldi Imaging ◽

Tryptic Peptides ◽

Formalin Fixed Paraffin ◽

Maldi Imaging Mass Spectrometry ◽

PP 28 Analytical performance and workflow comparison study of three methods for detecting KRAS mutations in formalin-fixed paraffin-embedded tissue (FFPET) specimens of colorectal cancer (CRC)

European Journal of Cancer ◽

10.1016/s0959-8049(11)72656-9 ◽

2011 ◽

Vol 47 ◽

pp. S18

Author(s):

D. Gonzalez de Castro ◽

B. Angulo ◽

B. Gomez ◽

D. Mair ◽

R. Martinez ◽

...

Keyword(s):

Colorectal Cancer ◽

Analytical Performance ◽

Comparison Study ◽

Kras Mutations ◽

Formalin Fixed Paraffin ◽

Front Cover: Classification of Inflammatory Bowel Disease from Formalin‐Fixed, Paraffin‐Embedded Tissue Biopsies via Imaging Mass Spectrometry

PROTEOMICS - CLINICAL APPLICATIONS ◽

10.1002/prca.202070061 ◽

2020 ◽

Vol 14 (6) ◽

pp. 2070061

Author(s):

Oliver Klein ◽

Franz Fogt ◽

Stephan Hollerbach ◽

Grit Nebrich ◽

Tobias Boskamp ◽

...

Keyword(s):

Mass Spectrometry ◽

Inflammatory Bowel Disease ◽

Bowel Disease ◽

Imaging Mass Spectrometry ◽

Front Cover ◽

Formalin Fixed Paraffin ◽

Inflammatory Bowel ◽