scholarly journals Optimized Mapping of Gas-Phase Quantum Calculations to General Force Field Lennard-Jones Parameters Based on Liquid-State Data

2019 ◽  
Author(s):  
Samuel Kantonen ◽  
Hari S. Muddana ◽  
Niel M. Henriksen ◽  
Lee-Ping Wang ◽  
Michael Gilson

We utilize a previously described Minimal Basis Iterative Stockholder (MBIS) method to carry out an atoms-in-molecules partitioning of electron densities. Information from these atomic densities is then mapped to Lennard-Jones parameters using a set of mapping parameters much smaller than the typical number of atom types in a force field. This approach is advantageous in two ways: it eliminates atom types by allowing each atom to have unique Lennard-Jones parameters, and it greatly reduces the number of parameters to be optimized. We show that this approach yields results comparable to those obtained with the typed GAFF force field, even when trained on a relatively small amount of experimental data.

Author(s):  
Samuel Kantonen ◽  
Hari S. Muddana ◽  
Niel M. Henriksen ◽  
Lee-Ping Wang ◽  
Michael Gilson

We utilize a previously described Minimal Basis Iterative Stockholder (MBIS) method to carry out an atoms-in-molecules partitioning of electron densities. Information from these atomic densities is then mapped to Lennard-Jones parameters using a set of mapping parameters much smaller than the typical number of atom types in a force field. This approach is advantageous in two ways: it eliminates atom types by allowing each atom to have unique Lennard-Jones parameters, and it greatly reduces the number of parameters to be optimized. We show that this approach yields results comparable to those obtained with the typed GAFF force field, even when trained on a relatively small amount of experimental data.


2020 ◽  
Vol 16 (2) ◽  
pp. 1115-1127 ◽  
Author(s):  
Sophie M. Kantonen ◽  
Hari S. Muddana ◽  
Michael Schauperl ◽  
Niel M. Henriksen ◽  
Lee-Ping Wang ◽  
...  

2014 ◽  
Vol 67 (9) ◽  
pp. 1166 ◽  
Author(s):  
Anna Chrostowska ◽  
Stanisław Leśniak

Flash vacuum thermolysis (FVT) is a particular method that allows the synthesis of stable compounds or the generation of short-lived species. Its coupling with spectroscopic characterisation provides very useful tools for mechanistic investigations. One of the most efficient and especially well suited techniques for this purpose is ultraviolet–photoelectron spectroscopy (UV-PES), which in tandem with FVT provides the ionisation energies of in situ formed molecules in the gas phase. The experimental data thus obtained in real-time are supported by quantum chemical calculations for consistency of the assignments of PES spectra and constitute fundamental information about electronic structure and bonding. The FVT/UV-PES technique has been known for more than 40 years, but one advantage in the present age is the greater confidence in electronic structure computations for predicting ionisation energies, thus providing the necessary tool for unambiguous interpretation of experimental data. This mini-review aims to give some representative, original examples, chosen from a French–Polish collaboration that illustrates the efficiency and wide applicability of the FVT/UV-PES tandem methodology. The selected examples on the FVT of thione and imine derivatives will be presented.


2021 ◽  
Vol 120 (3) ◽  
pp. 77a
Author(s):  
Payal Chatterjee ◽  
Mert Y. Sengul ◽  
Alexander D. MacKerell

2001 ◽  
Vol 22 (13) ◽  
pp. 1340-1352 ◽  
Author(s):  
Melissa L. P. Price ◽  
Dennis Ostrovsky ◽  
William L. Jorgensen

2000 ◽  
Vol 104 (31) ◽  
pp. 7333-7338 ◽  
Author(s):  
Stéphane A. H. Spieser ◽  
Bas R. Leeflang ◽  
Loes M. J. Kroon-Batenburg ◽  
Jan Kroon

1986 ◽  
Vol 51 (6) ◽  
pp. 1222-1239 ◽  
Author(s):  
Pavel Moravec ◽  
Vladimír Staněk

Expression have been derived in the paper for all four possible transfer functions between the inlet and the outlet gas and liquid steams under the counter-current absorption of a poorly soluble gas in a packed bed column. The transfer functions have been derived for the axially dispersed model with stagnant zone in the liquid phase and the axially dispersed model for the gas phase with interfacial transport of a gaseous component (PDE - AD). calculations with practical values of parameters suggest that only two of these transfer functions are applicable for experimental data evaluation.


1991 ◽  
Vol 56 (10) ◽  
pp. 2020-2029
Author(s):  
Jindřich Leitner ◽  
Petr Voňka ◽  
Josef Stejskal ◽  
Přemysl Klíma ◽  
Rudolf Hladina

The authors proposed and treated quantitatively a kinetic model for deposition of epitaxial GaAs layers prepared by reaction of trimethylgallium with arsine in hydrogen atmosphere. The transport of gallium to the surface of the substrate is considered as the controlling process. The influence of the rate of chemical reactions in the gas phase and on the substrate surface on the kinetics of the deposition process is neglected. The calculated dependence of the growth rate of the layers on the conditions of the deposition is in a good agreement with experimental data in the temperature range from 600 to 800°C.


1989 ◽  
Vol 54 (1) ◽  
pp. 18-27 ◽  
Author(s):  
Juan F. Arenas ◽  
Juan I. Marcos ◽  
Francisco J. Ramírez

The general quadratic force field for the in-plane vibrations of terephthalonitrile was calculated by the semi-empirical MINDO/3 method. This force field was refined to the frequencies observed experimentally for terephthalonitrile and isotopic shifts of terephthalonitrile-[15N2]. The refined frequencies reproduce the experimental data with errors less than 0.5%. The normal coordinates and the force field in internal coordinates were also calculated from the refined field.


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