scholarly journals The Bostrychia tenella species complex: Morphospecies and genetic cryptic species with resurrection of B. binderi

2021 ◽  
Author(s):  
Giuseppe Zuccarello ◽  
N Muangmai ◽  
Maren Preuss ◽  
LB Sanchez ◽  
SL De Göer ◽  
...  
Keyword(s):  
Cryptic Species ◽  
Morphological Variation ◽  
Species Complex ◽  
Type Specimen ◽  
Molecular Data ◽  
Molecular Evidence ◽  
Variable Species ◽  
Morphological Differences ◽  
Multiple Species ◽  
Genetic Species

© 2015 International Phycological Society. The question of whether morphological differences observed in specimens is due to multiple species or one variable species has always caused problems for taxonomists. The most recent taxonomic treatment of the 'Bostrychia tenella species complex' suggested that much of the morphological variation represented a single highly variable entity. We used molecular data from all three genomes to clarify the phylogeny, species status and phylogeography of samples collected worldwide and also in sympatry of this complex. Our data strongly support five genetic species in this complex, but only three morphological entities were recognized. The first, divided into two genetic species, fits characters associated with B. binderi, occasionally possessing short monosiphonous determinate laterals but lacking them most of the time. We therefore resurrect B. binderi, even though we could not assign a name to either of the two genetic species, as we are missing molecular evidence from the type specimen. One genetic species was morphologically recognized as B. montagnei. Another lineage consisted of the two genetic species that fall into a new circumscription of B. tenella, with long monosiphonous determinate laterals. Again we were unable to assign either of these two lineages to a type, nor could we find morphological differences between the two lineages. Many of the genetic species have worldwide distributions, except for B. montagnei, which appears to be restricted to the Americas. Our molecular-assisted taxonomy has helped clarify some of the morphological variation within the B. tenella species complex into three named species, but two cryptic species were still recognized that remain morphologically cryptic. This is an Accepted Manuscript of an article published by Taylor & Francis in 'Phycologia' on 2015-05-01, available online: https://www.tandfonline.com/10.2216/15-005.1.

scholarly journals The Bostrychia tenella species complex: Morphospecies and genetic cryptic species with resurrection of B. binderi

2021 ◽  
Author(s):  
Giuseppe Zuccarello ◽  
N Muangmai ◽  
Maren Preuss ◽  
LB Sanchez ◽  
SL De Göer ◽  
...  
Keyword(s):  
Cryptic Species ◽  
Morphological Variation ◽  
Species Complex ◽  
Type Specimen ◽  
Molecular Data ◽  
Molecular Evidence ◽  
Variable Species ◽  
Morphological Differences ◽  
Multiple Species ◽  
Genetic Species

© 2015 International Phycological Society. The question of whether morphological differences observed in specimens is due to multiple species or one variable species has always caused problems for taxonomists. The most recent taxonomic treatment of the 'Bostrychia tenella species complex' suggested that much of the morphological variation represented a single highly variable entity. We used molecular data from all three genomes to clarify the phylogeny, species status and phylogeography of samples collected worldwide and also in sympatry of this complex. Our data strongly support five genetic species in this complex, but only three morphological entities were recognized. The first, divided into two genetic species, fits characters associated with B. binderi, occasionally possessing short monosiphonous determinate laterals but lacking them most of the time. We therefore resurrect B. binderi, even though we could not assign a name to either of the two genetic species, as we are missing molecular evidence from the type specimen. One genetic species was morphologically recognized as B. montagnei. Another lineage consisted of the two genetic species that fall into a new circumscription of B. tenella, with long monosiphonous determinate laterals. Again we were unable to assign either of these two lineages to a type, nor could we find morphological differences between the two lineages. Many of the genetic species have worldwide distributions, except for B. montagnei, which appears to be restricted to the Americas. Our molecular-assisted taxonomy has helped clarify some of the morphological variation within the B. tenella species complex into three named species, but two cryptic species were still recognized that remain morphologically cryptic. This is an Accepted Manuscript of an article published by Taylor & Francis in 'Phycologia' on 2015-05-01, available online: https://www.tandfonline.com/10.2216/15-005.1.

Morphological variation in Bromus sect. Ceratochloa germplasm of Patagonia

2004 ◽  
Vol 82 (1) ◽  
pp. 136-144 ◽  
Author(s):  
Alicia N Massa ◽  
Kevin B Jensen ◽  
Steve R Larson ◽  
David J Hole
Keyword(s):  
Morphological Variation ◽  
Common Garden ◽  
Type Specimen ◽  
Molecular Data ◽  
Mantel Test ◽  
South American ◽  
Test Statistic ◽  
Plant Materials ◽  
Variable Species ◽  
Nearly Continuous

South American representatives of Bromus sect. Ceratochloa make up a morphologically diverse group of grasses indigenous to the southern Andes of Argentina and Chile. The objectives of the present study were to describe patterns of morphological variation among 30 accessions representing six species (Bromus catharticus Vahl, Bromus coloratus Steud., Bromus lithobius Trin., Bromus mango E. Desv., Bromus stamineus E. Desv., and Bromus tunicatus Phil.) in a common garden, correlate morphological and previously obtained molecular data, and develop a taxonomic treatment within sect. Ceratochloa of South America. Plant materials included 28 hexaploid (2n = 6x = 42) and 2 octoploid (2n = 8x = 56) accessions. Based on multivariate analyses of 24 characters, the two octoploid accessions formed an isolated, well-defined group, while the hexaploids formed two less-defined groups. Characterized by lemma awns longer than 3 mm, one group consisted of those accessions of B. coloratus, B. lithobius, and B. stamineus, whereas the other group consisted of B. catharticus, B. mango, and B. tunicatus. A significant Mantel test statistic (r = 0.70, P = 0.001) suggested a high correlation between morphological variation and DNA polymorphism. Taken together, our results indicated that the hexaploid complex should be described as a single variable species (B. cathar ticus), with two nearly continuous groups: B. catharticus subsp. catharticus (Vahl) Herter and B. catharticus subsp. stamineus (E. Desv.) Massa. Based on nomenclature priority and type specimen designations, the octoploid accessions should be described as Bromus coloratus.Key words: Bromus, morphology, multivariate analysis, Patagonia, taxonomy.

scholarly journals Cryptic speciation of the zoogonid digenean Diphterostomum flavum n. sp. demonstrated by morphological and molecular data

Parasite ◽  
2020 ◽  
Vol 27 ◽  
pp. 44
Author(s):  
Carmen Gilardoni ◽  
Jorge Etchegoin ◽  
Thomas Cribb ◽  
Susana Pina ◽  
Pedro Rodrigues ◽  
...  
Keyword(s):  
Intermediate Host ◽  
Cryptic Species ◽  
Feeding Habits ◽  
Molecular Data ◽  
Life Cycles ◽  
Diagnostic Feature ◽  
Molecular Evidence ◽  
Southwestern Atlantic Ocean ◽  
Second Intermediate Host ◽  
Morphological Differences

Diphterostomum brusinae (Zoogonidae) is a digenean species that has been recorded worldwide parasitizing marine fishes. Several species have been synonymized with D. brusinae because they lack conspicuous morphological differences. However, due to the breadth of its geographic distribution and the variety of hosts involved in the life cycles, it is likely to be an assemblage of cryptic species. Diphterostomum flavum n. sp. is described here as a morphologically cryptic relative of D. brusinae, in the fish Pinguipes brasilianus (Pinguipedidae) off the Patagonian coast, Southwestern Atlantic Ocean, and its life cycle is elucidated through morphology and molecular analysis. This species uses the gastropod Buccinanops deformis (Nassariidae) as first and second intermediate host with metacercariae encysting within sporocysts. They also, however, use the polychaete Kinbergonuphis dorsalis (Onuphidae) as second intermediate host. No morphological differences were found between adults of D. flavum n. sp. and D. brusinae; however, the number of penetration glands of the cercariae, a diagnostic feature, differed (9 vs. 3 pairs), as well as the ITS2 sequences for the two species. This work provides morphological and molecular evidence of cryptic diversification among species described as D. brusinae, in which the only clear differences are in larval morphology and host spectrum. The strict specificity to the snail acting as the first intermediate host and the variety of fishes with different feeding habits acting as definitive hosts support the likely existence of multiple cryptic species around the world.

scholarly journals Fungia fungites (Linnaeus, 1758) (Scleractinia, Fungiidae) is a species complex that conceals large phenotypic variation and a previously unrecognized genus

2020 ◽  
Vol 89 (2) ◽  
pp. 188-209
Author(s):  
Yutaro Oku ◽  
Kenji Iwao ◽  
Bert W. Hoeksema ◽  
Naoko Dewa ◽  
Hiroyuki Tachikawa ◽  
...  
Keyword(s):  
Species Complex ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Scleractinian Corals ◽  
Type Specimens ◽  
Mitochondrial Coi ◽  
Clade B ◽  
Unknown Species ◽  
Molecular Phylogenetic ◽  
Morphological Differences

Recent molecular phylogenetic analyses of scleractinian corals have resulted in the discovery of cryptic lineages. To understand species diversity in corals, these lineages need to be taxonomically defined. In the present study, we report the discovery of a distinct lineage obscured by the traditional morphological variation of Fungia fungites. This taxon exists as two distinct morphs: attached and unattached. Molecular phylogenetic analyses using mitochondrial COI and nuclear ITS markers as well as morphological comparisons were performed to clarify their phylogenetic relationships and taxonomic positions. Molecular data revealed that F. fungites consists of two genetically distinct clades (A and B). Clade A is sister to a lineage including Danafungia scruposa and Halomitra pileus, while clade B formed an independent lineage genetically distant from these three species. The two morphs were also found to be included in both clades, although the attached morph was predominantly found in clade A. Morphologically, both clades were statistically different in density of septal dentation, septal number, and septal teeth shape. These results indicate that F. fungites as presently recognized is actually a species complex including at least two species. After checking type specimens, we conclude that specimens in clade A represent true F. fungites with two morphs (unattached and attached) and that all of those in clade B represent an unknown species and genus comprising an unattached morph with only one exception. These findings suggest that more unrecognized taxa with hitherto unnoticed morphological differences can be present among scleractinian corals.

scholarly journals Description of two cryptic species of the Amolops ricketti group (Anura, Ranidae) from southeastern China

ZooKeys ◽  
2019 ◽  
Vol 812 ◽  
pp. 133-156 ◽  
Author(s):  
Zhi-Tong Lyu ◽  
Lin-Sheng Huang ◽  
Jian Wang ◽  
Yuan-Qiu Li ◽  
Hong-Hui Chen ◽  
...  
Keyword(s):  
Cryptic Species ◽  
Species Complex ◽  
The Body ◽  
Dorsal Skin ◽  
Southeastern China ◽  
Multiple Species

Two cryptic species, which were previously reported as Amolopsricketti, are revealed on the basis of significant morphological and genetic divergences. Amolopssinensissp. n. from central Guangdong, northeastern Guangxi and southwestern Hunan can be distinguished by the longitudinal glandular folds on the skin of the shoulders and other character combinations. Amolopsyatsenisp. n. from the coastal hills of west Guangdong can be distinguished by the dense tiny round translucent, or white, spines on the dorsal skin of the body, dorsal and dorsolateral skin of the limbs, and other character combinations. The phylogenetic interrelationships of the A.ricketti group have been inferred as (A.wuyiensis + A.ricketti) + (A.yunkaiensis + (A.albispinus + (A.sinensissp. n. + A.yatsenisp. n.))). This work indicates that the current records of A.ricketti might be a species complex composed of multiple species, and further work is needed to figure out this puzzle.

scholarly journals Epitypification of Fusarium oxysporum – clearing the taxonomic chaos

2019 ◽  
Vol 43 (1) ◽  
pp. 1-47 ◽  
Author(s):  
L. Lombard ◽  
M. Sandoval-Denis ◽  
S. C. Lamprecht ◽  
P.W. Crous
Keyword(s):  
Fusarium Oxysporum ◽  
Cryptic Species ◽  
Reference Point ◽  
Species Complex ◽  
Phylogenetic Inference ◽  
Classification Systems ◽  
As Species ◽  
Basic Reference ◽  
Cryptic Taxa ◽  
Morphological Differences

Fusarium oxysporum is the most economically important and commonly encountered species of Fusarium. This soil-borne fungus is known to harbour both pathogenic (plant, animal and human) and non-pathogenic strains. However, in its current concept F. oxysporum is a species complex consisting of numerous cryptic species. Identification and naming these cryptic species is complicated by multiple subspecific classification systems and the lack of living ex-type material to serve as basic reference point for phylogenetic inference. Therefore, to advance and stabilise the taxonomic position of F. oxysporum as a species and allow naming of the multiple cryptic species recognised in this species complex, an epitype is designated for F. oxysporum. Using multi-locus phylogenetic inference and subtle morphological differences with the newly established epitype of F. oxysporum as reference point, 15 cryptic taxa are resolved in this study and described as species.

scholarly journals Cryptic species in sympatry: Nonrandom small-scale distribution patterns in Bostrychia intricata (Ceramiales, Rhodophyta)

2020 ◽  
Author(s):  
N Muangmai ◽  
U Von Ammon ◽  
Giuseppe Zuccarello
Keyword(s):  
Cryptic Species ◽  
Algal Species ◽  
Sun Exposure ◽  
Distribution Patterns ◽  
Molecular Data ◽  
Small Scale ◽  
Ecological Resources ◽  
Intertidal Habitats ◽  
Multiple Species ◽  
Multiple Samples

© 2016 International Phycological Society. Sympatric coexistence of cryptic species, indistinguishable morphological taxa, has increasingly been detected on the basis of molecular data. This discovery raises the interesting question of how cryptic species can coexist, as hypothetically they would need identical ecological resources. The red alga Bostrychia intricata is commonly found along New Zealand shores. Previous studies indicated several cryptic species within this morphospecies, and that some populations have multiple species. This study aimed to determine how coexisting cryptic B. intricata distribute at a small scale. Along the shore of Moa Point, Wellington, we conducted intensive sampling of B. intricata in different habitats with respect to tidal position, wave and sun exposure levels. Our genetic data clearly documented the coexistence of three cryptic species of B. intricata: N2, N4 and N5. Multiple samples from individual algal patches indicated that each patch was made of the same ramet. Our analyses revealed a habitat-related pattern in small-scale distribution of different cryptic B. intricata, suggesting that the distribution of these cryptic species was not random. Cryptic species N4 was found at a higher tidal position than species N2 and N5, whereas cryptic species N2 occurred in more wave-exposed areas than the other species. Discriminant analysis indicated that tidal height strongly influenced the distribution pattern among these cryptic species. Our observations demonstrated that the co-occurrence of three cryptic B. intricata can partly be explained by their occupation of different intertidal habitats, highlighting the nonrandom distribution of coexisting cryptic algal species.

A simple molecular identification method of the Thrips tabaci (Thysanoptera: Thripidae) cryptic species complex

2019 ◽  
Vol 110 (3) ◽  
pp. 397-405 ◽  
Author(s):  
Péter Farkas ◽  
Zsuzsanna György ◽  
Annamária Tóth ◽  
Annamária Sojnóczki ◽  
József Fail
Keyword(s):  
Cryptic Species ◽  
Species Complex ◽  
Thrips Tabaci ◽  
Molecular Evidence ◽  
Reproduction Rate ◽  
Onion Thrips ◽  
Mitochondrial Coi ◽  
Wide Range ◽  
Cryptic Species Complex ◽  
Laboratory Colonies

AbstractThe onion thrips (Thrips tabaci Lindeman, 1889) is a key pest of a wide range of crops because of its ecological attributes such as polyphagy, high reproduction rate, ability to transmit tospoviruses and resistance to insecticides. Recent studies revealed that T. tabaci is a cryptic species complex and it has three lineages (leek-associated arrhenotokous L1-biotype, leek-associated thelytokous L2-biotype and tobacco-associated arrhenotokous T-biotype), however, the adults remain indistinguishable. T. tabaci individuals were collected from different locations of Hungary to create laboratory colonies from each biotypes. Mitochondrial COI (mtCOI) region was sequenced from morphologically identified individuals. After sequence analysis SNPs were identified and used for CAPS marker development, which were suitable for distinguishing the three T. tabaci lineages. Genetic analysis of the T. tabaci species complex based on mtCOI gene confirmed the three well-known biotypes (L1, L2, T) and a new biotype because the new molecular evidence presented in this study suggests T-biotype of T. tabaci forming two distinct (sub)clades (T1 and T2). This genetic finding indicates that the genetic variability of T. tabaci populations is still not fully mapped. We validated our developed marker on thrips individuals from our thrips colonies. The results demonstrated that the new marker effectively identifies the different T. tabaci biotypes. We believe that our reliable genotyping method will be useful in further studies focusing on T. tabaci biotypes and in pest management by scanning the composition of sympatric T. tabaci populations.

scholarly journals Scolopsis igcarensis Mishra, Biswas, Russell, Satpathy & Selvanayagam, 2013, a junior synonym of S. vosmeri (Bloch, 1792) (Perciformes: Nemipteridae)

Zootaxa ◽  
2019 ◽  
Vol 4629 (4) ◽  
pp. 589-599
Author(s):  
BARRY C. RUSSELL ◽  
MOHAMMAD EUSUF HASAN ◽  
JEAN-DOMINIQUE DURAND
Keyword(s):  
Phylogenetic Analysis ◽  
Sri Lanka ◽  
Coastal Waters ◽  
Species Complex ◽  
Molecular Data ◽  
Junior Synonym ◽  
Southern India ◽  
Sister Species ◽  
Morphological Differences

Scolopsis igcarensis Mishra, Biswas, Russell, Satpathy & Selvanayagam, 2013 was described from specimens collected from coastal waters of southern India and Sri Lanka. A comparison of recently collected specimens from Bangladesh, initially identified as S. igcarensis, with Scolopsis vosmeri (Bloch, 1792) showed morphological differences between the two species are minor, and that specimens of S. igcarensis in fact represent juvenile and subadult colour forms of S. vosmeri. Underwater and aquarium observations, as well as molecular data based on the COI barcode region, support this conclusion. Accordingly, S. igcarensis is regarded as a junior synonym of S. vosmeri, which is redescribed herein. Phylogenetic analysis of COI barcodes of Scolopsis specimens produced in this study, together with those available from GenBank, indicate S. vosmeri is part of a species complex which includes two additional cryptic sister species that require further taxonomic investigation. 

scholarly journals Comprehensive approaches reveal three cryptic species of genus Nidirana (Anura, Ranidae) from China

ZooKeys ◽  
2020 ◽  
Vol 914 ◽  
pp. 127-159 ◽  
Author(s):  
Zhi-Tong Lyu ◽  
Ke-Yuan Dai ◽  
Yao Li ◽  
Han Wan ◽  
Zhe-Yi Liu ◽  
...  
Keyword(s):  
New Species ◽  
Cryptic Species ◽  
Species Complex ◽  
Xiangjiang River ◽  
Multiple Characteristics ◽  
Taiwan Island ◽  
Three New Species ◽  
Multiple Species ◽  
Xiangjiang River Basin ◽  
Nanling Mountains

Three cryptic species, which were previously reported as Nidirana adenopleura, are revealed on the basis of comprehensive approaches. Nidirana guangdongensis Lyu, Wan, and YY Wang, sp. nov. is distributed in Nanling Mountains and southern Luoxiao Mountains, Nidirana mangveni Lyu, Qi, and YY Wang, sp. nov. is known from northern Zhejiang, and Nidirana xiangica Lyu and YY Wang, sp. nov. occurs in Xiangjiang River Basin, while the true Nidirana adenopleura is designated from Taiwan Island, northern Fujian, southern Zhejiang, and central Jiangxi. These three new species can be distinguished from all congeners by significant divergences in the mitochondrial 16S and CO1 genes, differences in advertisement calls, and the combination of multiple characteristics. This work indicates that the current records of Nidirana adenopleura should be of a species complex composed of multiple species and have clarified the true identity of N. adenopleura.

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