Identification of sources of blast resistance in rice

2020 ◽  
Author(s):  
O.A. Bragina O.A. ◽  
Keyword(s):  
Blast Resistance ◽  
Blast Disease ◽  
Rice Breeding ◽  
Rice Varieties ◽  
Rice Disease

In recent years, the most dangerous and harmful rice disease - blast disease - has begun to spread in the rice-growing regions of the Krasnodar Territory. Using phytopathological methods, an assessment of the resistance of rice varieties and lines to blast disease was carried out. Against a natural infectious background, rice breeding materials are differentiated by the level of resistance and susceptibility to disease.

Mapping Blast Resistance Genes in Rice Varieties ‘Minghui 63’ and ‘M-202’

Plant Disease ◽  
2021 ◽  
Author(s):  
Yulin Jia ◽  
Melissa H Jia ◽  
Zongbu Yan
Keyword(s):  
Resistance Genes ◽  
Blast Resistance ◽  
Interval Mapping ◽  
Blast Disease ◽  
Chromosome 1 ◽  
Rice Breeding ◽  
Resistance Qtls ◽  
Rice Varieties ◽  
Short Period ◽  
Blast Resistance Genes

Rice blast disease caused by the fungus Magnaporthe oryzae (syn. M. grisea) is one of the most lethal diseases for sustainable rice production worldwide. Blast resistance mediated by major resistance genes are often broken-down after a short period of deployment, while minor blast resistance genes, each providing a small effect on disease reactions, are more durable. In the present study, we first evaluated disease reactions of two rice breeding parents ‘Minghui 63’ and ‘M-202’ with 11 US blast races, IA45, IB1, IB45, IB49, IB54, IC1, IC17, ID1, IE1, IG1, and IH1 commonly found under greenhouse conditions using a category disease rating resembling infection types under field conditions. ‘Minghui 63’ exhibited differential resistance responses in comparison with that of ‘M-202’ to the tested blast races. A recombinant inbred line (RIL) population of 275 lines from a cross between ‘Minghui 63’ and ‘M-202’ was also evaluated with the above mentioned blast races. The population was genotyped with 156 simple sequence repeat (SSR) and insertion and deletion (Indel) markers. A linkage map with a genetic distance of 1022.84 cM was constructed using inclusive composite interval mapping (ICIM) software. A total of 10 resistance QTLs, eight from ‘Minghui 63’ and two from ‘M-202’, were identified. One major QTL, qBLAST2 on chr 2, was identified by seven races/isolates. The remaining nine minor resistance QTLs were mapped on chromosome 1, 3, 6, 9, 10, 11 and 12. These findings provide useful genetic markers and resources to tag minor blast resistance genes for marker assisted selection in rice breeding program and for further studies of underlying genes.

scholarly journals Exploring the Distribution of Blast Resistance Alleles at the Pi2/9 Locus in Major Rice-Producing Areas of China by a Novel Indel Marker

Plant Disease ◽  
2020 ◽  
Vol 104 (7) ◽  
pp. 1932-1938
Author(s):  
Dagang Tian ◽  
Yan Lin ◽  
Ziqiang Chen ◽  
Zaijie Chen ◽  
Fang Yang ◽  
...  
Keyword(s):  
Blast Resistance ◽  
Resistance Breeding ◽  
Field Trials ◽  
Indel Marker ◽  
Blast Disease ◽  
Cereal Crops ◽  
R Genes ◽  
Rice Varieties ◽  
Environment Friendly ◽  
The World

Rice blast disease caused by the fungus Magnaporthe oryzae damages cereal crops and poses a high risk to rice production around the world. Currently, planting cultivars with resistance (R) genes is still the most environment-friendly approach to control this disease. Effective identification of R genes existing in diverse rice cultivars is important for understanding the distribution of R genes and predicting their contribution to resistance against blast isolates in regional breeding. Here, we developed a new insertion/deletion (InDel) marker, Pigm/2/9InDel, that can differentiate the cloned R genes (Pigm, Pi9, and Pi2/Piz-t) at the Pi2/9 locus. Pigm/2/9InDel combined with the marker Pi2-LRR for Pi2 was applied to determine the distribution of these four R genes among 905 rice varieties, most of which were collected from the major rice-producing regions in China. In brief, nine Pigm-containing varieties from Fujian and Guangdong provinces were identified. All of the 62 Pi2-containing varieties were collected from Guangdong, and 60 varieties containing Piz-t were from seven provinces. However, Pi9 was not found in any of the Chinese varieties. The newly identified varieties carrying the Pi2/9 alleles were further subjected to inoculation tests with regional blast isolates and field trials. Our results indicate that Pigm and Pi2 alleles have been introgressed for blast resistance breeding mainly in the Fujian and Guangdong region, and Pi9 is a valuable blast resistance resource to be introduced into China.

scholarly journals Rice Blast Disease in India: Present Status and Future Challenges

2021 ◽  
Author(s):  
Deepak Chikkaballi Annegowda ◽  
Mothukapalli Krishnareddy Prasannakumar ◽  
Hirehally Basavarajegowda Mahesh ◽  
Chethana Bangera Siddabasappa ◽  
Pramesh Devanna ◽  
...  
Keyword(s):  
Resistance Genes ◽  
Oryza Sativa L ◽  
Blast Resistance ◽  
Gene Pyramiding ◽  
Climatic Conditions ◽  
Blast Disease ◽  
Selection Marker ◽  
Rice Varieties ◽  
Future Challenges ◽  
Blast Resistance Genes

Rice (Oryza sativa L.) is the staple food of the majority of Indians, and India is both the major producer and consumer of rice. Rice cultivation in India is confronted with diverse agro-climatic conditions, varying soil types, and several biotic and abiotic constraints. Among major fungal diseases of Rice in India, the blast caused by Magnaporthe oryzae is the most devastating disease, with the neck blast being the most destructive form. Most of the blast epidemic areas in India have been identified with a mixture of races blast fungus resulting in the resistance breakdown in a short period. At present, a more significant number of the rice varieties cultivated in India were bred by conventional breeding methods with blast resistance conferred by a single resistance gene. Therefore, the blast disease in India is predominantly addressed by the use of ecologically toxic fungicides. In line with the rest of the world, the Indian scientific community has proven its role by identifying several blast resistance genes and successfully pyramiding multiple blast resistance genes. Despite the wealth of information on resistance genes and the availability of biotechnology tools, not a great number of rice varieties in India harbor multiple resistance genes. In the recent past, a shift in the management of blast disease in India has been witnessed with a greater focus on basic research and modern breeding tools such as marker-assisted selection, marker-assisted backcross breeding, and gene pyramiding.

scholarly journals Genomic insight into balancing high yield, good quality, and blast resistance of japonica rice

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Ning Xiao ◽  
Cunhong Pan ◽  
Yuhong Li ◽  
Yunyu Wu ◽  
Yue Cai ◽  
...  
Keyword(s):  
Rice Blast ◽  
Large Scale ◽  
Blast Resistance ◽  
Taste Quality ◽  
Landscape Analysis ◽  
Central China ◽  
Blast Disease ◽  
High Yield ◽  
Rice Varieties ◽  
Genomic Landscape

Abstract Background Balancing the yield, quality and resistance to disease is a daunting challenge in crop breeding due to the negative relationship among these traits. Large-scale genomic landscape analysis of germplasm resources is considered to be an efficient approach to dissect the genetic basis of the complex traits. Central China is one of the main regions where the japonica rice is produced. However, dozens of high-yield rice varieties in this region still exist with low quality or susceptibility to blast disease, severely limiting their application in rice production. Results Here, we re-sequence 200 japonica rice varieties grown in central China over the past 30 years and analyze the genetic structure of these cultivars using 2.4 million polymorphic SNP markers. Genome-wide association mapping and selection scans indicate that strong selection for high-yield and taste quality associated with low-amylose content may have led to the loss of resistance to the rice blast fungus Magnaporthe oryzae. By extensive bioinformatic analyses of yield components, resistance to rice blast, and taste quality, we identify several superior alleles for these traits in the population. Based on this information, we successfully introduce excellent taste quality and blast-resistant alleles into the background of two high-yield cultivars and develop two elite lines, XY99 and JXY1, with excellent taste, high yield, and broad-spectrum of blast resistance. Conclusions This is the first large-scale genomic landscape analysis of japonica rice varieties grown in central China and we demonstrate a balancing of multiple agronomic traits by genomic-based strategy.

scholarly journals Selection of Differential Isolates of Magnaporthe oryzae for Postulation of Blast Resistance Genes

2018 ◽  
Vol 108 (7) ◽  
pp. 878-884 ◽  
Author(s):  
W. W. Fang ◽  
C. C. Liu ◽  
H. W. Zhang ◽  
H. Xu ◽  
S. Zhou ◽  
...  
Keyword(s):  
Resistance Genes ◽  
Magnaporthe Oryzae ◽  
Blast Resistance ◽  
Polymerase Chain Reaction Analysis ◽  
Colony Growth ◽  
Blast Disease ◽  
Avirulence Genes ◽  
Rice Varieties ◽  
Minimum Number ◽  
Blast Resistance Genes

A set of differential isolates of Magnaporthe oryzae is needed for the postulation of blast resistance genes in numerous rice varieties and breeding materials. In this study, the pathotypes of 1,377 M. oryzae isolates from different regions of China were determined by inoculating detached rice leaves of 24 monogenic lines. Among them, 25 isolates were selected as differential isolates based on the following characteristics: they had distinct responses on the monogenic lines, contained the minimum number of avirulence genes, were stable in pathogenicity and conidiation during consecutive culture, were consistent colony growth rate, and, together, could differentiate combinations of the 24 major blast resistance genes. Seedlings of rice cultivars were inoculated with this differential set of isolates to postulate whether they contain 1 or more than 1 of the 24 blast resistance genes. The results were consistent with those from polymerase chain reaction analysis of target resistance genes. Establishment of a standard set of differential isolates will facilitate breeding for blast resistance and improved management of rice blast disease.

scholarly journals Study of pathogenicity and genetic diversity of Magnaporthe oryzae isolated from rice hybrid Wuyou 308 and detection of resistance genes

2020 ◽  
Vol 56 (No. 3) ◽  
pp. 93-101
Author(s):  
Bo Lan ◽  
Ying-Qing Yang ◽  
Qiang Sun ◽  
Hong-Fan Chen ◽  
Jian Chen ◽  
...  
Keyword(s):  
Resistance Genes ◽  
Magnaporthe Oryzae ◽  
Rice Blast ◽  
Blast Resistance ◽  
Rice Variety ◽  
Climatic Conditions ◽  
Blast Disease ◽  
Rice Varieties ◽  
Rice Blast Resistance ◽  
Rice Hybrid

To understand the cause of loss of rice blast resistance, we studied the pathogenicity of Magnaporthe oryzae strains isolated from rice hybrid Wuyou 308 and evaluated its resistance genes. A total of 62 M. oryzae strains were isolated and tested in 7 Chinese rice varieties with varying degrees of resistance to rice blast and 30 blast-resistant monogenic lines. Fourteen physiological races of M. oryzae were identified: 8.55% belonging to the ZA group, 86.67% to the ZB group, and 5.00% to the ZC group. ZB15 was the most abundant race (45.00%). Five resistance genes, Pi-3(1), Pi-z5, Pi-k, Pi-kp(C), and Pi-k(C), conferred good resistance to the 62 strains, with resistance frequencies of 95.56, 91.11, 88.89, 82.22, and 82.22%, respectively. In contrast, Pi-a(2) had a resistance frequency of 0%. The hybrid combination Wuyou 308 was found to carry Pi-ta and Pi-b genes. Because Pi-ta and Pi-b both showed low resistance frequencies to M. oryzae isolated from Jiangxi, the hybrid rice variety Wuyou 308 could be infected by most of the 62 M. oryzae strains. The emergence and spread of rice blast disease in Wuyou 308 may thus be difficult to avoid when climatic conditions are favourable.

scholarly journals Screening of rice genotypes for leaf blast resistance under field condition

2020 ◽  
Vol 3 (2) ◽  
pp. 276-286
Author(s):  
Pratiksha Sharma ◽  
Prem Bahadur Magar ◽  
Suraj Baidya ◽  
Ram Baran Yadaw
Keyword(s):  
Field Experiment ◽  
Blast Resistance ◽  
Blast Disease ◽  
Disease Assessment ◽  
Research Centre ◽  
Leaf Blast ◽  
Rice Varieties ◽  
Rice Genotypes ◽  
Moderately Resistant ◽  
Resistant Genotypes

Blast, caused by Pyriculariagrisea (Sacc.) is the most destructive disease of rice in Nepal. To identify the sources of leaf blast resistance in rice genotypes, a field experiment was conducted under natural epiphytotic condition at National Plant Pathology Research Centre (NPPRC), Khumaltar, Lalitpur, Nepal during summer season in 2018 and 2019.A total of 128 rice genotypes in 2018 and 291during 2019 including resistant check (Sabitri) and susceptible check (Shankharika/Mansuli) were tested. Field experiment was conducted in single rod row design. Leaf blast disease assessment was done according to 0-9 scale. During 2018, 59 entries were highly resistant (Score 0), 34 resistant (Score 1), 26 moderately resistant (Score 2-3), 5 were moderately susceptible (Score 4-5), 4 susceptible (Score 6-7) and none of them were highly susceptible (Score 8-9) to leaf blast. Similarly, in 2019, 6 lines were highly resistant, 70 resistant, 196 moderately resistant, 15 lines were moderately susceptible, 4 susceptible and none of them were highly susceptible to the disease. Only, one genotype NR2179-82-2-4-1-1-1-1 (Score 1) was found resistant in both years. Similarly, genotype NR2182-22-1-3-1-1-1 (Score 2-3) was found moderately resistant. Some of the genotypes were found resistant in 2018 which become moderately resistant in 2019, they were NR2180-20-2-5-1-1-1-1, IR97135-8-3-1-3, IR98786-13-1-2-1, NR2181-139-1-3-1-1-1-1, and IR13F402. So, findings of these resistant and moderately resistant genotypes could be used in resistant source for the development of leaf blast resistant rice varieties through hybridization in future.

scholarly journals Evaluation of neck blast resistance and agronomical performances on double haploid rice population in greenhouse and endemic field

2017 ◽  
Vol 9 (4) ◽  
pp. 371-377
Author(s):  
GUT WINDARSIH ◽  
DWINITA WIKAN UTAMI
Keyword(s):  
Double Haploid ◽  
Blast Resistance ◽  
Blast Disease ◽  
Rice Varieties ◽  
Resistance Response ◽  
Neck Blast ◽  
Susceptible Control ◽  
Genotype Evaluation ◽  
Dh Lines ◽  
Differential Varieties

Windarsih G, Utami DW. 2017. Evaluation of neck blast resistance and agronomical performances on double haploid rice population in greenhouse and endemic field. Nusantara Bioscience 9: 371-377. Blast disease caused by fungal Pyricularia grisea Sacc. is one of the most destructive diseases of rice in the world. The development of blast-resistant rice varieties will be essential to control this disease. This research aimed (i) to compare the resistance response to neck-blast among DH lines from double cross IR54/Parekaligolara//Bio110/Markuti and the differential varieties against three selected Indonesian blast races in greenhouse, (ii) to identify the gene(s) that caused the resistance to neck-blast based on the association between the resistance response and the genotype evaluation using molecular markers linked to Pi1, Pi33, Pib, Pir4 and Pir7 genes, and (iii) to evaluate the resistance response to leaf and neck blast on DH lines in endemic field (Sukabumi) and the agronomical performance of selected DH lines in optimum field in Ciasem of Subang, West Java, Indonesia during December 2013 to March 2014. Eleven double haploid lines from double-crossing IR54/Parekaligolara//Bio110/Markuti, the differential varieties as resistant control and the US2 variety for susceptible control were observed for neck-blast resistance response to three blast races in greenhouse and endemic field (Sukabumi), while the agronomical performances were observed in field of Ciasem-Subang. The results based on the genotyping evaluation, leaf and neck blast resistance, either in greenhouse and endemic location, and the agronomical performance in field showed that 5 selected double haploid lines had leaf and neck blast resistance and good performance on field trial. Thus they are promising for use either for further testing forwarding into releasing variety or used as donor for further blast resistant breeding activities.

scholarly journals Improvement of a RD6 Rice Variety for Blast Resistance and Salt Tolerance through Marker-Assisted Backcrossing

Agronomy ◽  
2020 ◽  
Vol 10 (8) ◽  
pp. 1118 ◽  
Author(s):  
Korachan Thanasilungura ◽  
Sukanya Kranto ◽  
Tidarat Monkham ◽  
Sompong Chankaew ◽  
Jirawat Sanitchon
Keyword(s):  
Salt Stress ◽  
Salt Tolerance ◽  
Agronomic Traits ◽  
Blast Resistance ◽  
Rice Variety ◽  
Gene Pyramiding ◽  
Blast Disease ◽  
Resistance Qtls ◽  
Rice Varieties ◽  
Marker Assisted Backcrossing

RD6 is one of the most favorable glutinous rice varieties consumed throughout the north and northeast of Thailand because of its aroma and softness. However, blast disease and salt stress cause decreases in both yield quantity and quality during cultivation. Here, gene pyramiding via marker-assisted backcrossing (MAB) using combined blast resistance QTLs (qBl 1, 2, 11, and 12) and Saltol QTL was employed in solving the problem. To pursue our goal, the RD6 introgression line (RGD07005-12-165-1), containing four blast-resistant QTLs, were crossed with the Pokkali salt tolerant variety. Blast resistance evaluation was thoroughly carried out in the fields, from BC2F2:3 to BC4F4, using the upland short-row and natural field infection methods. Additionally, salt tolerance was validated in both greenhouse and field conditions. We found that the RD6 “BC4F4 132-12-61” resulting from our breeding programme successfully resisted blast disease and tolerated salt stress, while it maintained the desirable agronomic traits of the original RD6 variety. This finding may provide a new improved rice variety to overcome blast disease and salt stress in Northeast Thailand.

Functional validation of the Pi54 gene by knocking down its expression in a blast-resistant rice line using RNA interference and its effects on other traits

2018 ◽  
Vol 45 (12) ◽  
pp. 1241
Author(s):  
Kirti Arora ◽  
Amit Kumar Rai ◽  
Basavantraya N. Devanna ◽  
Banita Kumari ◽  
Tilak Raj Sharma
Keyword(s):  
Rice Blast ◽  
Oryza Sativa L ◽  
Blast Resistance ◽  
Single Gene ◽  
Blast Disease ◽  
Functional Validation ◽  
Rice Varieties ◽  
Resistance Response ◽  
Rice Line ◽  
Rice Blast Resistance

Rice blast disease caused by Magnaporthe oryzae is one of the major diseases affecting the rice (Oryza sativa L.) crop. A major blast resistance gene, Pi54, has already been cloned and deployed in different rice varieties. To understand the role of Pi54 in providing rice blast resistance, we used the RNA interferences (RNAi) approach to knock down the expression of this gene. We showed a high frequency of Agrobacterium tumefaciens-mediated transformation of rice line Taipei 309 containing a single gene (Pi54) for blast resistance. Pi54 RNAi leads to a decreased level of Pi54 transcripts, leading to the susceptibility of otherwise M. oryzae-resistant rice lines. However, among the RNAi knockdown plants, the severity of blast disease varied between the lines. Histochemical analysis of the leaves of knockdown plants inoculated with M. oryzae spores also showed typical cell death and blast lesions. Additionally, Pi54 RNAi also showed an effect on the Hda3 gene, a florigen gene playing a role in rice flowering. By using the RNAi technique, for the first time, we showed that the directed degradation of Pi54 transcripts results in a significant reduction in the rice blast resistance response, suggesting that RNAi is a powerful tool for functional validation of genes.

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