scholarly journals Beta and phylogenetic diversities tell complementary stories about ecological networks biogeography

2020 ◽  
Author(s):  
Gracielle Higino ◽  
Timothée Poisot
Keyword(s):  
Species Composition ◽  
Beta Diversity ◽  
Phylogenetic Diversity ◽  
Diversity Index ◽  
Species Interaction ◽  
Interaction Networks ◽  
Published Data ◽  
Spatial Gradients ◽  
Community Dissimilarity ◽  
Phylogenetic Dissimilarity

The beta-diversity of interactions between communities does not necessarily correspond to the differences related to their species composition because interactions show greater variability than species co-occurrence. Additionally, the structure of species interaction networks can itself vary over spatial gradients, thereby adding constraints on the dissimilarity of communities in space. We used published data on the parasitism interaction between Soricomorpha and Rodentia in 51 regions of the Palearctic to investigate how beta-diversity of networks and phylogenetic diversity are related. The networks could be separated in groups based on the metrics that best described the differences between them, and these groups were also geographically structured. We also found that each network beta-diversity index relates in a particular way with phylogenetically community dissimilarity, reinforcing that some of these indexes have a strong phylogenetic component. Our results clarify important aspects of the biogeography of hosts and parasites communities in Eurasia, while suggesting that networks beta-diversity and phylogenetic dissimilarity interact with the environment in different ways.

Kyiv park "Nivki" and "Teremki" forests and ecological analysis of their habitats

2014 ◽  
Vol 25 (3-4) ◽  
pp. 53-68
Author(s):  
I. V. Goncharenko ◽  
H. M. Holyk
Keyword(s):  
Standard Deviation ◽  
Species Composition ◽  
Human Impact ◽  
Soil Nitrogen ◽  
Beta Diversity ◽  
Plant Cover ◽  
Alpha Diversity ◽  
Light Regime ◽  
Individual Species ◽  
Anthropogenic Pressure

Cenotic diversity and leading ecological factors of its floristic differentiation were studied on an example of two areas – Kyiv parks "Nivki" and "Teremki". It is shown that in megalopolis the Galeobdoloni-Carpinetum impatientosum parviflorae subassociation is formed under anthropogenic pressure on the typical ecotope of near-Dnieper hornbeam oak forests on fresh gray-forest soils. The degree of anthropogenic transformation of cenofloras can be estimated by the number of species of Robinietea and Galio-Urticetea classes, as well as neophytes and cultivars. Phytoindication for hemeroby index may be also used in calculation. We propose the modified index of biotic dispersion (normalized by alpha-diversity) for the estimation of ecophytocenotic range (beta-diversity) of releves series. We found that alpha-diversity initially increases (due to the invasion of antropophytes) at low level of antropogenic pressure, then it decreases (due to the loss of aboriginal species) secondarily with increasing of human impact. Also we found that beta-diversity (differential diversity) decreases, increasing homogeneity of plant cover, under the influence of anthropogenic factor. Vegetation classification was completed by a new original method of cluster analysis, designated as DRSA («distance-ranked sorting assembling»). The classification quality is suggested to be validated on the "seriation" diagram, which is а distance matrix between objects with gradient filling. Dark diagonal blocks confirm clusters’ density (intracluster compactness), uncolored off-diagonal blocks are evidence in favor of clusters’ isolation (intercluster distinctness). In addition, distinction of clusters (syntaxa) in ordination area suggests their independence. For phytoindication we propose to include only species with more than 10% constancy. Furthermore, for the description of syntaxonomic amplitude we suggest to use 25%-75% interquartile scope instead of mean and standard deviation. It is shown that comparative analysis of syntaxa for each ecofactor is convenient to carry out by using violin (bulb) plots. A new approach to the phytoindication of syntaxa, designated as R-phytoindication, was proposed for our study. In this case, the ecofactor values, calculated for individual releves, are not taken into account, however, the composition of cenoflora with species constancies is used that helps us to minimize for phytoindication the influence of non-typical species. We suggested a syntaxon’s amplitude to be described by more robust statistics: for the optimum of amplitude (central tendency) – by a median (instead of arithmetic mean), and for the range of tolerance – by an interquartile scope (instead of standard deviation). We assesses amplitudes of syntaxa by phytoindication method for moisture (Hd), acidity (Rc), soil nitrogen content (Nt), wetting variability (vHd), light regime (Lc), salt regime (Sl). We revealed no significant differences on these ecofactors among ecotopes of our syntaxa, that proved the variant syntaxonomic rank for all syntaxa. We found that the core of species composition of our phytocenoses consists of plants with moderate requirements for moisture, soil nitrogen, light and salt regime. We prove that the leading factor of syntaxonomic differentiation is hidden anthropogenic, which is not subject to direct measurement. But we detect that hidden factor of "human pressure" was correlated with phytoindication parameters (variables) that can be measured "directly" by species composition of plant communities. The most correlated factors were ecofactors of soil nitrogen, wetting variability, light regime and hemeroby. The last one is the most indicative empirically for the assessment of "human impact". We establish that there is a concept of «hemeroby of phytocenosis» (tolerance to human impact), which can be calculated approximately as the mean or the median of hemeroby scores of individual species which are present in it.

Carabidae of Barnaul city parks: ecological characteristics and species composition

2018 ◽  
Vol 8 (2) ◽  
pp. 348-353
Author(s):  
E. A. Kuchina ◽  
N. D. Ovcharenko ◽  
L. D. Vasileva
Keyword(s):  
Species Composition ◽  
Diversity Index ◽  
Similarity Index ◽  
Life Forms ◽  
Ground Beetles ◽  
Forest Steppe ◽  
Ecological Groups ◽  
Dominant Group ◽  
Species Diversity Index ◽  
Steppe Species

<p>Anthropogenic impact on the population of ground beetles leads to a change in their numbers, structure of dominance, density, species composition, spectrum of life forms. This makes the beetles Carabidae a convenient and informative bioindicator of the ecological state of biocenoses. The material for this work was the Carabidae collections conducted in June-August 2016-2017 in the park zone of different regions of Barnaul, differing in location, area, hydrological regime, vegetation cover, purpose and anthropogenic load. When processing the material, the quantitative, species and generic composition of the carabidae was determined, calculations were made for such indicators as the Berger-Parker dominance index, the Shannon species diversity index (Hs), and the Jacquard species similarity index. The fauna (Coleoptera, Carabidae) of the park zone of Barnaul is represented by 55 species belonging to 20 genera. The dominant group is represented by species belonging to steppe, forest and polyzonal groups. Forest-steppe species of ground beetles as dominants have not been identified in any of the investigated territories. The greatest variety of ecological groups was noted on the territory of the Yubileyny рark, which is explained by the presence of zones with various microclimatic conditions, the presence of a birch grove that flows through the park with the Pivovarka River, and a wide log in the park. Registered species belong to eight groups of life forms belonging to two classes - zoophagous and myxophytophagous. On the numerical and species abundance, zoophages predominate. The spectrum of life forms corresponds to the zonal spectrum characteristic of the forest-steppe zone.</p><p> </p>

scholarly journals Effects of grazing on plant species diversity and above ground biomass in a Trans- Himalayan Rangeland

1970 ◽  
Vol 17 (1) ◽  
pp. 25-31 ◽  
Author(s):  
Anita Pokharel ◽  
Madhu Chhetri ◽  
Chiranjibi P Upadhyaya
Keyword(s):  
Species Diversity ◽  
Species Composition ◽  
Plant Species ◽  
Diversity Index ◽  
Livestock Grazing ◽  
Above Ground Biomass ◽  
Ground Biomass ◽  
Grazing Effect ◽  
Significant Difference ◽  
Palatable Species

Limited information is available on the species composition, above ground biomass and its relations to grazing in a trans-Himalayan rangeland. Its assessment is essential for long term conservation and management. In the present study, we compared species composition, phenology, diversity index and biomass between controlled (without grazing) and open (free grazing) plots to assess the effects of grazing in the selected experimental sites of Upper Mustang during July and November 2005. Species encountered were classified as high, medium, low and non palatable and in three life form categories-grasses, shrubs and forbs. The experimental sites are dominated by forbs (80%) followed by grasses (15%) and shrubs (5%). Disturbance caused by grazing affects the phenological characteristics of the plant community. Result also reveals that species diversity, maximum possible diversity, evenness and species richness was higher in the grazed plots during July and November. A comparison of the aboveground biomass in July showed that mean percentage biomass of high, medium and low palatable species is higher in ungrazed plots. In November, the percentage biomass of only medium palatable species was higher in ungrazed plots and rest of the category is higher in grazed plots. Significant difference in July, a peak growing seasons for most of the plant species in the region reveals that the pasture has impact of livestock grazing. Keywords: Biomass, diversity, grazing effect, rangeland, species Banko Janakari: A journal of forestry information for Nepal Vol.17(1) 2007 pp.25-31

scholarly journals The possibility of reclamation criteria success in Indonesia: soil condition, vegetation structure and species composition

2021 ◽  
Vol 9 (1) ◽  
pp. 3201-3210
Author(s):  
Tedi Yunanto ◽  
Farisatul Amanah ◽  
Nabila Putri Wisnu
Keyword(s):  
Species Composition ◽  
Vegetation Structure ◽  
Diversity Index ◽  
Basal Area ◽  
Mineral Resources ◽  
Soil Condition ◽  
Mine Reclamation ◽  
Soil Conditions ◽  
Standard Interval ◽  
Chemical Conditions

There are two regulations for mine reclamation success in the forestry area in Indonesia, namely Minister of Forestry Regulation No. P.60/Menhut-II/2009 and Minister of Energy and Mineral Resources Decree No. 1827.K/30/MEM/2018. Both regulations rule vegetation and soil success. This study aims to analyse criteria parameters from both regulations in the mine reclamation and compare them to the surrounding secondary natural forest (SNF). This study was conducted in 6 six types of mine reclamation stand structures: 1, 4, 6, 9, 11-year-old plantation and SNF using 1 hectare of the circular plot each (total 6 ha). Soil samples were collected from 40 cm depth to analyse physical, biological and chemical conditions. Mine reclamation areas had almost similar physical, biological and chemical soil conditions with SNF. Nevertheless, due to the potential acid-forming (PAF) material from overburden, the 1-year-old plantation had pH = 3.23-3.27. The highest diversity index and the number of species and families in all reclamation areas were H’ = 1.82 (11-year-old); 14 species (9-year-old); and 11 families (9-year-old), comparing with SNF were H’ = 3.48; 67 species, and 31 families. Conversely, vegetation structure parameters in mine reclamation areas were higher than SNF (diameter at height breast (DBH; 1.3 m) = 28.42 cm; tree density = 469/ha; basal area = 35.04 m2/ha; and total height = 16.85 m). Compared to the SNF, vegetation structure and soil conditions are mostly possible for mine reclamation success. Still, species composition needs to be considered further as a standard interval to meet the criteria.

scholarly journals Amphipod (Crustacea, Amphipoda) Communities in the North-Western Part of the Black Sea

2016 ◽  
Vol 50 (5) ◽  
pp. 387-394
Author(s):  
S. A. Kudrenko
Keyword(s):  
Species Composition ◽  
Community Composition ◽  
Black Sea ◽  
The Black Sea ◽  
Published Data ◽  
Amphipod Species ◽  
Quantitative Parameters ◽  
The North ◽  
North Western

Abstract The data about the community composition, number and biomass of amphipods in three gulfs of the North-Western Black Sea are presented. The amphipod communities of the gulfs of Yahorlyk, Karkinit, and Tendra were studied and the species composition was compared with the previously published data. For each particular gulf, the list of amphipod species was composed. The quantitative parameters of the amphipod communities in the studied localities in different years were described.

Tree Species Composition and Beta Diversity in the Upper Río Chagres Basin, Panama

2005 ◽  
pp. 227-235 ◽  
Author(s):  
Rolando Pérez ◽  
Salomón Aguilar ◽  
Agustín Somoza ◽  
Richard Condit ◽  
Israel Tejada ◽  
...  
Keyword(s):  
Species Composition ◽  
Tree Species ◽  
Beta Diversity ◽  
Tree Species Composition

scholarly journals Beta Diversity Partitioning and Drivers of Variations in Fish Assemblages in a Headwater Stream: Lijiang River, China

Water ◽  
2019 ◽  
Vol 11 (4) ◽  
pp. 680 ◽  
Author(s):  
Liangliang Huang ◽  
Jian Huang ◽  
Zhiqiang Wu ◽  
Yuanmin Mo ◽  
Qi Zou ◽  
...  
Keyword(s):  
Species Composition ◽  
Beta Diversity ◽  
Fish Assemblages ◽  
Headwater Streams ◽  
Species Turnover ◽  
Diversity Partitioning ◽  
Spatial Variables ◽  
Lijiang River ◽  
Abiotic Variables ◽  
Hydrological Variables

Beta diversity partitioning has currently received much attention in research of fish assemblages. However, the main drivers, especially the contribution of spatial and hydrological variables for species composition and beta diversity of fish assemblages are less well studied. To link species composition to multiple abiotic variables (i.e., local environmental variables, hydrological variables, and spatial variables), the relative roles of abiotic variables in shaping fish species composition and beta diversity (i.e., overall turnover, replacement, and nestedness) were investigated in the upstream Lijiang River. Species composition showed significant correlations with environmental, hydrological, and spatial variables, and variation partitioning revealed that the local environmental and spatial variables outperformed hydrological variables, and especially abiotic variables explained a substantial part of the variation in the fish composition (43.2%). The overall species turnover was driven mostly by replacement (87.9% and 93.7% for Sørensen and Jaccard indices, respectively) rather than nestedness. Mantel tests indicated that the overall species turnover (ßSOR and ßJAC) and replacement (ßSIM and ßJTU) were significantly related to hydrological, environmental, and spatial heterogeneity, whereas nestedness (ßSNE or ßJNE) was insignificantly correlated with abiotic variables (P > 0.05). Moreover, the pure effect of spatial variables on overall species turnover (ßSOR and ßJAC) and replacement (ßSIM and ßJTU), and the pure effect of hydrological variables on replacement (ßSIM and ßJTU), were not important (P > 0.05). Our findings demonstrated the relative importance of interactions among environmental, hydrological, and spatial variables in structuring fish assemblages in headwater streams; these fish assemblages tend to be compositionally distinct, rather than nested derivatives of one another. Our results, therefore, indicate that maintaining natural flow dynamics and habitat continuity are of vital importance for conservation of fish assemblages and diversity in headwater streams.

scholarly journals Assessment and Composition of Fish in the River District Maro Merauke

2018 ◽  
Vol 73 ◽  
pp. 04006
Author(s):  
Edy H.P Melmambessy ◽  
Irianis L. Latuperissa ◽  
Marius Agustinus Welliken ◽  
Nova Suryawati Monika ◽  
Rosa Delima Pangaribuan
Keyword(s):  
Data Analysis ◽  
Species Composition ◽  
Diversity Index ◽  
Survey Method ◽  
Frequency Diversity ◽  
Lates Calcarifer ◽  
Dominance Index ◽  
Gill Net ◽  
Scomberomorus Commerson ◽  
Index Value

Maro River is one of the major rivers in Merauke Regency that has a width of about 43-900 m and length of 300 km. The purpose of this study is to find out the type and composition of fish caught using gill net in Maro River, Merauke Regency. This study was conducted in Maro River, Merauke Regency from May to June 2014. It was conducted using survey method. The data analysis included: species composition, relative abundance, availability frequency, diversity index and dominance index. The results of showed 1,084 fish in 17 species with the following composition; 490 of Kurtus gulliveri species (37,01%), 212 of Eleutheronema tetradactylum species (20,33%), 170 of Polydactylus plebeius species (16,30%), 75 of crassilabris Cinetodus species (7,19%), 64 of Cinetodus froggatti species (6,14%), 37 of Argyrosomus amoyensis species (3,55%), 20 of Mugil cephalus species (1,92%), 15 of Megalops cyprinoides species (1,53%), 15 of Thryssa scratchleyi species (1,4%), 12 of Lebtobrama sp species (1,15%), 9 of Lates calcarifer species (0,86%), 7 of Marilyna meraukensis species (0,67%), 7 of Scomberomorus commerson species (0,67%), 5 of Nibea squamosal species (0,48%), 4 of Rhinoptera javanica species (0,38%), 3 of Harpadon microchir species (0,29%) and 1 of Datnioides campbelli species (0,10%). Based on the availability frequency, there are 37 species with a percentage of 100%, 37 species with 67% and 7 species with 33%. The diversity of fish has a moderate value of 1<H’<3. The obtained dominance index value is close to 0, then it is stated that there is no species found to be dominant.

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