scholarly journals Pseudo-188D: Phage Protein Prediction Based on a Model of Pseudo-188D

2021 ◽  
Vol 12 ◽  
Author(s):  
Xiaomei Gu ◽  
Lina Guo ◽  
Bo Liao ◽  
Qinghua Jiang
Keyword(s):  
Gradient Descent ◽  
Stochastic Gradient Descent ◽  
Skin Infections ◽  
Medical Treatments ◽  
Protein Prediction ◽  
Gradient Descent Algorithm ◽  
Phage Protein ◽  
Biochemical Systems ◽  
The Stability ◽  
Phage Proteins

Phages have seriously affected the biochemical systems of the world, and not only are phages related to our health, but medical treatments for many cancers and skin infections are related to phages; therefore, this paper sought to identify phage proteins. In this paper, a Pseudo-188D model was established. The digital features of the phage were extracted by PseudoKNC, an appropriate vector was selected by the AdaBoost tool, and features were extracted by 188D. Then, the extracted digital features were combined together, and finally, the viral proteins of the phage were predicted by a stochastic gradient descent algorithm. Our model effect reached 93.4853%. To verify the stability of our model, we randomly selected 80% of the downloaded data to train the model and used the remaining 20% of the data to verify the robustness of our model.

scholarly journals Revisiting the dynamic interactions between economic growth and environmental pollution in Italy: evidence from a gradient descent algorithm

2021 ◽  
Author(s):  
Marco Mele ◽  
Cosimo Magazzino ◽  
Nicolas Schneider ◽  
Floriana Nicolai
Keyword(s):  
Economic Growth ◽  
Gradient Descent ◽  
Statistical Data ◽  
Stochastic Gradient Descent ◽  
Policy Recommendations ◽  
Dynamic Interactions ◽  
Gradient Descent Algorithm ◽  
The Relationship ◽  
Main Strand ◽  
Yearly Data

AbstractAlthough the literature on the relationship between economic growth and CO2 emissions is extensive, the use of machine learning (ML) tools remains seminal. In this paper, we assess this nexus for Italy using innovative algorithms, with yearly data for the 1960–2017 period. We develop three distinct models: the batch gradient descent (BGD), the stochastic gradient descent (SGD), and the multilayer perceptron (MLP). Despite the phase of low Italian economic growth, results reveal that CO2 emissions increased in the predicting model. Compared to the observed statistical data, the algorithm shows a correlation between low growth and higher CO2 increase, which contradicts the main strand of literature. Based on this outcome, adequate policy recommendations are provided.

scholarly journals Optical Recognition of Handwritten Logic Formulas Using Neural Networks

Electronics ◽  
2021 ◽  
Vol 10 (22) ◽  
pp. 2761
Author(s):  
Vaios Ampelakiotis ◽  
Isidoros Perikos ◽  
Ioannis Hatzilygeroudis ◽  
George Tsihrintzis
Keyword(s):  
Neural Networks ◽  
Character Recognition ◽  
Gradient Descent ◽  
Feedforward Neural Networks ◽  
Stochastic Gradient ◽  
Stochastic Gradient Descent ◽  
Training Algorithms ◽  
Gradient Descent Algorithm ◽  
Two Stages ◽  
And Training

In this paper, we present a handwritten character recognition (HCR) system that aims to recognize first-order logic handwritten formulas and create editable text files of the recognized formulas. Dense feedforward neural networks (NNs) are utilized, and their performance is examined under various training conditions and methods. More specifically, after three training algorithms (backpropagation, resilient propagation and stochastic gradient descent) had been tested, we created and trained an NN with the stochastic gradient descent algorithm, optimized by the Adam update rule, which was proved to be the best, using a trainset of 16,750 handwritten image samples of 28 × 28 each and a testset of 7947 samples. The final accuracy achieved is 90.13%. The general methodology followed consists of two stages: the image processing and the NN design and training. Finally, an application has been created that implements the methodology and automatically recognizes handwritten logic formulas. An interesting feature of the application is that it allows for creating new, user-oriented training sets and parameter settings, and thus new NN models.

MapReduce and Optimized Deep Network for Rainfall Prediction in Agriculture

2020 ◽  
Vol 63 (6) ◽  
pp. 900-912
Author(s):  
Oswalt Manoj S ◽  
Ananth J P
Keyword(s):  
Deep Learning ◽  
Gradient Descent ◽  
Prediction Models ◽  
Short Term Memory ◽  
Stochastic Gradient ◽  
Stochastic Gradient Descent ◽  
Mean Square ◽  
Rainfall Prediction ◽  
Gradient Descent Algorithm ◽  
Major Factors

Abstract Rainfall prediction is the active area of research as it enables the farmers to move with the effective decision-making regarding agriculture in both cultivation and irrigation. The existing prediction models are scary as the prediction of rainfall depended on three major factors including the humidity, rainfall and rainfall recorded in the previous years, which resulted in huge time consumption and leveraged huge computational efforts associated with the analysis. Thus, this paper introduces the rainfall prediction model based on the deep learning network, convolutional long short-term memory (convLSTM) system, which promises a prediction based on the spatial-temporal patterns. The weights of the convLSTM are tuned optimally using the proposed Salp-stochastic gradient descent algorithm (S-SGD), which is the integration of Salp swarm algorithm (SSA) in the stochastic gradient descent (SGD) algorithm in order to facilitate the global optimal tuning of the weights and to assure a better prediction accuracy. On the other hand, the proposed deep learning framework is built in the MapReduce framework that enables the effective handling of the big data. The analysis using the rainfall prediction database reveals that the proposed model acquired the minimal mean square error (MSE) and percentage root mean square difference (PRD) of 0.001 and 0.0021.

scholarly journals Locally adaptive activation functions with slope recovery for deep and physics-informed neural networks

2020 ◽  
Vol 476 (2239) ◽  
pp. 20200334 ◽  
Author(s):  
Ameya D. Jagtap ◽  
Kenji Kawaguchi ◽  
George Em Karniadakis
Keyword(s):  
Neural Networks ◽  
Adaptive Learning ◽  
Gradient Descent ◽  
Activation Function ◽  
Stochastic Gradient Descent ◽  
Activation Functions ◽  
Gradient Descent Algorithm ◽  
Locally Adaptive ◽  
The Matrix ◽  
Base Method

We propose two approaches of locally adaptive activation functions namely, layer-wise and neuron-wise locally adaptive activation functions, which improve the performance of deep and physics-informed neural networks. The local adaptation of activation function is achieved by introducing a scalable parameter in each layer (layer-wise) and for every neuron (neuron-wise) separately, and then optimizing it using a variant of stochastic gradient descent algorithm. In order to further increase the training speed, an activation slope-based slope recovery term is added in the loss function, which further accelerates convergence, thereby reducing the training cost. On the theoretical side, we prove that in the proposed method, the gradient descent algorithms are not attracted to sub-optimal critical points or local minima under practical conditions on the initialization and learning rate, and that the gradient dynamics of the proposed method is not achievable by base methods with any (adaptive) learning rates. We further show that the adaptive activation methods accelerate the convergence by implicitly multiplying conditioning matrices to the gradient of the base method without any explicit computation of the conditioning matrix and the matrix–vector product. The different adaptive activation functions are shown to induce different implicit conditioning matrices. Furthermore, the proposed methods with the slope recovery are shown to accelerate the training process.

LEAST SQUARE REGRESSION WITH COEFFICIENT REGULARIZATION BY GRADIENT DESCENT

2012 ◽  
Vol 10 (01) ◽  
pp. 1250005 ◽  
Author(s):  
JUAN HUANG ◽  
HONG CHEN ◽  
LUOQING LI
Keyword(s):  
Integral Operator ◽  
Explicit Expression ◽  
Gradient Descent ◽  
Stochastic Gradient ◽  
Least Square ◽  
Stochastic Gradient Descent ◽  
Least Square Regression ◽  
Learning Rates ◽  
Gradient Descent Algorithm ◽  
Regularization Parameters

We propose a stochastic gradient descent algorithm for the least square regression with coefficient regularization. An explicit expression of the solution via sampling operator and empirical integral operator is derived. Learning rates are given in terms of the suitable choices of the step sizes and regularization parameters.

Estimation of Power System Harmonic Using Modified Normalized Least Mean Square

2015 ◽  
Vol 785 ◽  
pp. 378-382 ◽  
Author(s):  
H.M.M. Alhaj ◽  
N.M. Nor ◽  
Vijanth S. Asirvadam ◽  
M.F. Abdullah ◽  
T. Ibrahim
Keyword(s):  
Power System ◽  
Gradient Descent ◽  
Stochastic Gradient Descent ◽  
Mean Square ◽  
Least Mean Square ◽  
Linear Element ◽  
Gradient Descent Algorithm ◽  
Normalized Least Mean Square ◽  
Adaptive Power ◽  
Harmonic Components

A new adaptive power system harmonic estimator is presented, which is competent of tracking power system harmonic components. The proposed estimator technique is based on the normalized Least Mean Square (LMS), which is a stochastic gradient descent algorithm. The learning method of the proposed estimator is based upon the recursive estimate of the signal power, and is faster tracking of harmonic components as compared to the introduced Adaptive Linear Element (ADALINE).

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